genome.fa.s2.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  16  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4763273--4763308	19	1.9	18	88	5	54	55	19	0	25	1.43
4763894--4763918	3	8.3	3	100	0	50	64	0	0	36	0.94
4764282--4764355	22	3.3	22	67	23	64	56	8	6	28	1.54
4764287--4764376	45	2.0	45	97	0	171	54	11	6	27	1.60
4772423--4772461	11	3.4	11	89	10	60	35	0	0	64	0.94
4772419--4772474	23	2.3	24	81	12	69	42	0	0	57	0.99
4777853--4777915	22	2.9	21	79	9	56	50	7	1	39	1.41
4777863--4777915	22	2.4	22	81	15	65	52	7	0	39	1.30
4789025--4789230	88	2.3	88	89	0	313	29	19	21	28	1.98
4789025--4789419	44	8.8	44	70	9	190	29	17	23	29	1.97
4789196--4789506	137	2.2	139	85	1	401	31	18	23	27	1.97
4797275--4797317	21	2.0	21	86	9	59	30	0	0	69	0.88
4797290--4797328	19	2.1	18	86	13	53	30	2	0	66	1.05
4800615--4800863	129	1.9	130	91	2	412	29	20	18	31	1.96
4800632--4800963	129	2.6	129	85	3	400	28	20	17	33	1.95
4800626--4801112	131	3.7	131	80	5	346	28	20	17	34	1.95
4814937--4814984	23	2.1	23	100	0	96	41	20	4	33	1.72
4819065--4819095	15	2.0	16	93	6	55	35	12	0	51	1.40
4819837--4819899	30	2.1	30	90	0	99	55	14	6	23	1.62
4821317--4821358	11	3.8	11	81	9	50	78	0	0	21	0.75
4821311--4821352	22	1.9	22	90	0	66	78	0	2	19	0.86
4831347--4831400	20	2.7	21	88	11	87	59	37	0	3	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4831347--4831402	18	2.8	20	92	7	89	57	39	0	3	1.16
4833880--4833915	12	3.0	12	95	0	63	27	25	5	41	1.77
4842117--4842287	68	2.5	69	85	5	215	28	14	23	33	1.94
4842287--4842452	72	2.3	71	89	4	253	22	15	20	41	1.89
4842583--4842740	79	2.0	77	81	4	183	29	15	18	36	1.91
4842681--4842842	88	1.8	88	84	2	218	27	17	19	35	1.94
4842764--4843008	84	3.0	79	71	15	253	25	15	19	39	1.91
4842867--4842928	30	2.1	30	90	6	99	20	9	29	40	1.84
4847945--4848023	40	2.0	40	97	0	149	43	5	13	37	1.67
4867338--4867370	2	16.5	2	100	0	66	48	0	0	51	1.00
4868814--4868855	21	2.0	20	82	13	50	42	7	9	40	1.65
4874953--4874982	14	2.1	14	93	0	51	30	13	16	40	1.87
4877383--4877423	19	2.2	19	86	4	57	70	4	2	21	1.18
4877349--4877422	31	2.4	31	78	13	82	66	4	2	27	1.23
4881545--4881579	16	2.2	16	100	0	70	34	22	5	37	1.78
4882657--4882687	14	2.2	14	94	0	53	41	32	6	19	1.77
4882682--4882739	14	4.1	14	77	14	57	36	43	0	20	1.52
4883294--4883441	41	3.6	41	87	0	199	22	20	19	37	1.95
4883297--4883506	41	5.1	41	77	10	119	21	20	20	38	1.94
4885036--4885073	3	12.7	3	100	0	76	34	0	0	65	0.93
4888083--4888140	30	1.9	30	89	0	89	41	3	24	31	1.71
4888351--4888382	13	2.5	13	94	0	55	31	0	12	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4888477--4888718	50	4.7	50	86	4	297	26	24	29	19	1.99
4888477--4888726	100	2.4	103	88	6	364	26	24	29	20	1.99
4892049--4892103	29	2.0	27	82	10	67	52	12	5	29	1.61
4892126--4892156	16	1.9	16	93	0	53	58	0	0	41	0.98
4894023--4894799	87	8.6	86	70	16	413	37	19	14	28	1.91
4894146--4894193	14	3.5	14	80	5	53	60	10	12	16	1.58
4894145--4894182	13	2.8	14	84	4	51	55	10	13	21	1.67
4894212--4894787	85	6.5	85	70	14	353	37	19	14	28	1.91
4894212--4894787	172	3.3	171	76	13	601	37	19	14	28	1.91
4894023--4894695	276	2.4	270	83	9	792	36	19	14	28	1.91
4894262--4894615	189	1.9	188	86	4	507	37	19	13	29	1.90
4894418--4894475	29	2.0	29	100	0	116	48	6	6	37	1.57
4894462--4894781	84	3.7	88	79	11	349	35	21	14	28	1.93
4894463--4894786	86	3.8	85	79	11	342	36	21	14	27	1.93
4894744--4894854	54	2.0	55	98	1	215	39	18	13	28	1.88
4904945--4904989	21	2.0	23	87	8	67	64	2	0	33	1.06
4908638--4908669	13	2.5	13	94	0	55	31	6	18	43	1.75
4916026--4916080	27	2.0	27	86	6	76	30	1	0	67	1.01
4916039--4916080	12	3.1	14	80	16	52	30	2	0	66	1.04
4919768--4919833	29	2.3	29	97	0	123	16	22	7	53	1.68
4920242--4920279	15	2.5	15	91	0	58	28	10	34	26	1.90
4923745--4923850	54	2.0	54	92	0	176	38	19	16	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4925482--4925614	48	2.8	46	81	15	155	32	9	6	52	1.57
4926598--4926622	7	3.6	7	100	0	50	28	0	16	56	1.41
4928616--4928640	7	3.6	7	100	0	50	28	0	16	56	1.41
4928609--4928640	14	2.3	15	84	15	50	28	0	15	56	1.40
4932727--4933045	174	1.8	175	88	2	489	25	20	18	35	1.95
4932902--4933229	126	2.6	125	86	2	426	25	21	17	35	1.95
4935129--4935241	40	2.8	40	76	5	120	34	20	20	24	1.96
4935509--4935541	14	2.4	14	94	0	57	18	0	27	54	1.44
4937450--4937922	131	3.6	130	80	5	449	34	19	19	26	1.95
4940915--4941077	84	2.0	83	86	3	229	36	13	19	30	1.90
4943963--4944015	21	2.5	21	84	0	70	30	20	47	1	1.61
4943963--4944028	21	3.2	20	75	12	53	31	19	45	3	1.66
4946629--4946714	31	2.7	31	83	3	100	13	5	22	58	1.57
4946795--4946948	45	3.5	45	75	9	158	27	21	15	35	1.94
4949960--4950001	19	2.3	19	88	12	61	54	2	0	42	1.13
4950479--4950532	16	3.2	16	81	7	54	14	0	31	53	1.41
4950499--4950545	25	1.9	24	91	4	76	14	0	34	51	1.43
4950643--4950692	24	2.1	24	81	3	57	18	0	26	56	1.42
4950667--4950937	138	2.0	138	92	0	454	39	2	20	37	1.68
4950949--4951007	17	3.4	17	81	4	73	16	0	30	52	1.44
4950538--4951112	297	1.9	293	85	7	750	36	2	20	40	1.67
4951134--4951443	126	2.5	127	91	1	491	38	15	17	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4953465--4953507	7	6.0	7	91	2	68	55	13	2	27	1.51
4954646--4954684	20	2.0	21	90	10	64	48	7	17	25	1.74
4954666--4954712	10	4.6	10	79	12	51	51	2	23	23	1.59
4954650--4954695	21	2.2	20	84	3	56	56	6	17	19	1.62
4954780--4954812	12	2.6	13	95	4	59	12	18	45	24	1.83
4957028--4957080	26	2.0	26	82	7	63	24	15	20	39	1.91
4958566--4958673	26	4.2	26	91	2	173	36	23	7	33	1.83
4969706--4969752	15	2.9	17	69	18	55	31	19	4	44	1.70
4972710--4972755	23	2.0	23	100	0	92	43	4	13	39	1.63
4973899--4974189	143	2.0	144	86	4	399	44	17	6	32	1.73
4974563--4974649	27	3.6	24	77	16	83	40	0	1	58	1.05
4974574--4974649	26	3.0	25	75	21	77	39	0	1	59	1.06
4975247--4975287	20	2.0	20	90	0	64	36	9	7	46	1.65
4975751--4975813	30	2.1	30	96	0	117	26	3	12	57	1.51
4977489--4977566	37	2.1	37	100	0	156	23	21	23	32	1.98
4977490--4977551	21	3.2	21	60	21	53	19	24	24	32	1.98
4981666--4981789	44	2.8	44	92	0	203	43	21	12	22	1.85
4986354--4986395	21	2.0	22	85	4	59	76	0	11	11	1.03
4986654--4986720	29	2.2	30	79	12	75	43	13	16	26	1.85
4986924--4986980	28	2.0	28	96	0	105	38	15	14	31	1.87
4993238--4993370	57	2.3	58	78	6	135	22	14	17	45	1.84
4994243--4994346	52	2.0	52	92	0	172	34	14	16	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4995132--4995169	16	2.5	16	87	8	53	34	10	7	47	1.67
4995127--4995169	14	2.9	15	79	10	52	37	9	9	44	1.69
4999917--4999955	19	2.1	19	85	0	51	38	2	0	58	1.12
5000955--5001011	23	2.5	23	75	11	62	40	0	0	59	0.97
5000972--5001018	23	2.1	23	85	14	64	34	0	0	65	0.93
5001426--5001479	28	1.9	28	85	7	74	64	3	7	24	1.35
5004880--5004911	16	2.0	16	100	0	64	31	25	25	18	1.98
5005058--5005273	78	2.9	77	82	5	246	54	11	8	26	1.64
5005474--5005601	33	3.9	33	81	5	143	27	13	44	14	1.83
5005478--5005601	66	1.9	66	85	6	171	27	13	44	14	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295