genome.fa.s2.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  136  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46438776--46438989	105	2.1	104	86	4	299	27	0	13	57	1.42
46438998--46439061	34	1.9	33	84	12	87	34	0	9	56	1.32
46440820--46440899	39	2.1	39	100	0	160	16	15	37	31	1.89
46446000--46446044	18	2.6	18	85	3	65	13	37	28	20	1.90
46449252--46449293	21	2.0	21	100	0	84	28	23	19	28	1.98
46459123--46459252	39	3.3	39	96	0	224	26	23	28	21	1.99
46459145--46459271	39	3.2	39	90	1	137	25	26	28	19	1.99
46462327--46462502	46	3.8	46	78	11	189	21	21	27	29	1.98
46462324--46462494	93	1.8	93	89	2	272	22	21	27	28	1.99
46476150--46476251	46	2.2	46	85	0	132	28	24	12	34	1.92
46476164--46476264	46	2.2	46	89	0	148	24	26	12	35	1.92
46482507--46482673	37	4.5	37	78	4	113	38	16	14	29	1.89
46488672--46488950	50	5.6	49	80	4	299	30	27	17	24	1.97
46488664--46488950	150	1.9	150	93	1	495	29	27	18	24	1.98
46488672--46488948	99	2.8	99	80	4	324	30	27	17	24	1.97
46489586--46489645	30	2.0	30	83	6	77	28	25	8	38	1.84
46491691--46491729	15	2.5	15	91	4	60	56	15	12	15	1.68
46494480--46494805	50	6.5	50	85	3	406	29	28	16	24	1.97
46494702--46494777	22	3.2	22	67	25	64	28	34	14	22	1.93
46494460--46494804	150	2.3	150	90	0	548	29	28	17	24	1.97
46494699--46494778	24	3.2	24	64	35	62	30	33	13	22	1.93
46495239--46495345	26	4.2	25	89	5	169	32	8	23	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46496967--46497097	27	4.9	26	87	6	181	17	25	22	34	1.96
46496967--46497097	54	2.4	54	94	1	237	17	25	22	34	1.96
46503486--46503600	29	4.0	28	78	8	115	28	29	15	26	1.96
46503811--46503861	16	3.2	16	77	8	59	9	19	17	52	1.72
46503817--46503863	24	2.0	24	87	8	69	10	23	17	48	1.77
46506904--46506952	22	2.2	20	77	19	53	48	26	4	20	1.67
46515061--46515267	44	4.6	42	69	16	112	30	20	20	28	1.98
46515048--46515361	138	2.3	138	80	7	343	32	20	18	28	1.96
46515147--46515529	188	2.0	188	85	2	509	33	18	18	30	1.95
46515200--46515602	188	2.1	188	80	6	415	33	17	18	30	1.94
46517503--46517527	8	3.1	8	100	0	50	12	0	60	28	1.32
46518401--46518531	46	2.8	47	81	2	149	29	17	29	23	1.97
46518594--46518716	49	2.5	49	86	4	158	28	21	26	22	1.99
46522798--46522833	18	2.0	18	94	0	63	41	5	22	30	1.76
46525633--46525806	46	3.7	46	78	13	160	28	17	29	24	1.97
46525634--46525857	94	2.4	94	78	6	238	29	20	27	22	1.99
46531507--46531562	26	2.2	26	100	0	112	30	7	26	35	1.83
46535116--46535320	27	7.6	27	86	3	259	26	15	27	30	1.96
46535117--46535320	109	1.9	108	89	3	320	26	15	27	30	1.96
46537008--46537148	27	5.2	26	83	10	167	17	25	22	34	1.96
46537008--46537148	54	2.6	53	89	2	201	17	25	22	34	1.96
46537008--46537166	27	5.9	26	82	7	131	18	25	21	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46539423--46539646	40	5.6	40	86	3	297	24	23	27	25	2.00
46539427--46539646	83	2.7	80	87	5	293	23	23	27	25	2.00
46545783--46545888	51	2.1	51	96	3	196	31	7	25	35	1.84
46545783--46545888	25	4.2	26	98	1	198	31	7	25	35	1.84
46547472--46547612	27	5.2	26	83	6	174	17	24	23	35	1.95
46547472--46547630	54	3.0	53	87	6	223	18	24	22	35	1.96
46547472--46547630	27	5.9	27	80	11	157	18	24	22	35	1.96
46565367--46565408	14	2.9	14	83	16	59	23	0	2	73	0.94
46569399--46569427	11	2.6	11	100	0	58	41	13	10	34	1.79
46583322--46583529	92	2.3	89	81	9	233	45	14	7	31	1.74
46583684--46583756	29	2.5	30	84	10	89	68	1	0	30	0.98
46583682--46583744	20	3.0	21	81	9	74	71	0	0	28	0.86
46583683--46583808	19	6.7	19	66	14	55	67	3	1	27	1.15
46584100--46584140	21	2.0	21	85	9	57	26	2	2	68	1.15
46584124--46584178	28	2.0	27	85	3	74	40	3	0	56	1.17
46584548--46584612	30	2.2	29	84	10	80	12	12	10	64	1.50
46588834--46588871	19	2.0	19	90	10	60	65	0	5	28	1.14
46589047--46589095	24	2.0	24	100	0	98	38	4	12	44	1.61
46593246--46593393	74	2.0	73	85	3	199	53	6	6	33	1.54
46593321--46593438	39	3.1	39	76	4	105	55	6	5	32	1.51
46593361--46593438	39	2.0	38	87	2	111	55	6	5	33	1.48
46594333--46594622	140	2.1	140	93	0	499	25	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46595999--46596047	11	4.5	11	80	15	57	75	2	0	22	0.90
46595999--46596047	16	3.1	16	80	16	57	75	2	0	22	0.90
46597766--46597798	12	2.5	13	85	14	50	9	0	15	75	1.03
46597770--46597798	12	2.3	13	94	5	51	6	0	17	75	1.01
46599160--46599224	20	3.2	20	93	0	103	38	12	0	49	1.41
46599174--46599212	12	3.6	12	74	25	50	38	10	0	51	1.36
46605373--46605458	41	2.1	41	93	0	145	37	23	15	24	1.93
46606859--46606903	20	2.2	20	88	0	63	35	13	2	48	1.54
46609106--46609314	52	4.0	52	77	4	161	32	21	15	30	1.95
46609923--46609951	7	4.1	7	100	0	58	27	0	27	44	1.54
46616777--46616828	21	2.4	22	80	9	61	63	0	3	32	1.12
46616790--46616829	21	1.9	21	89	0	62	65	0	5	30	1.14
46619962--46619994	17	1.9	17	93	0	57	51	21	6	21	1.69
46629182--46629409	40	5.7	40	92	3	370	25	27	22	25	2.00
46630522--46630627	48	2.2	48	93	5	187	18	18	10	51	1.74
46639849--46640076	40	5.7	40	89	3	343	25	26	21	25	1.99
46641217--46641312	41	2.3	42	96	3	176	20	20	12	45	1.83
46643738--46643992	127	2.0	127	96	0	465	47	17	11	23	1.80
46644011--46644201	95	2.0	95	96	0	355	38	16	14	29	1.89
46644940--46645061	46	2.6	46	86	2	154	24	29	18	27	1.98
46646110--46646178	30	2.3	30	97	0	129	20	34	24	20	1.96
46648909--46649411	47	10.6	47	91	3	703	33	9	29	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46649190--46649267	25	3.2	25	65	23	67	29	6	30	33	1.83
46653129--46653236	26	4.2	26	93	0	189	32	7	24	36	1.83
46660199--46660306	26	4.2	26	93	0	189	32	7	24	36	1.83
46664267--46664340	17	4.4	17	73	0	67	47	17	6	28	1.73
46664231--46664339	51	2.1	51	86	0	146	44	17	9	28	1.79
46664966--46665009	18	2.3	20	76	15	56	43	22	6	27	1.78
46667553--46667621	34	2.0	34	94	0	120	30	15	14	39	1.88
46676484--46676531	25	1.9	25	86	0	69	31	22	16	29	1.96
46676662--46676781	50	2.4	50	83	5	145	27	23	24	25	2.00
46676662--46676756	25	3.8	25	91	0	145	26	24	24	25	2.00
46676978--46677092	31	3.7	31	87	1	160	33	17	25	23	1.96
46679018--46679054	16	2.4	16	86	8	51	51	0	8	40	1.32
46679068--46679092	12	2.1	12	100	0	50	40	0	8	52	1.31
46681128--46681175	25	1.9	25	86	0	69	31	22	16	29	1.96
46681306--46681400	25	3.8	25	92	0	154	26	25	23	25	2.00
46681622--46681705	31	2.7	31	83	1	107	32	16	27	23	1.96
46687634--46687817	64	2.8	63	78	8	183	23	29	17	28	1.97
46695886--46696390	81	6.2	81	86	3	633	29	22	8	39	1.84
46695918--46696380	27	17.1	27	84	2	563	28	22	8	40	1.83
46696385--46696580	27	7.3	27	85	0	239	35	17	19	27	1.94
46696781--46696833	27	2.0	27	92	0	88	18	24	20	35	1.95
46697137--46697213	27	2.9	27	86	3	93	16	23	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46697336--46697546	6	34.8	6	78	12	227	19	18	14	48	1.81
46697336--46697535	91	2.2	91	89	7	300	19	18	14	47	1.82
46699523--46699898	25	14.8	26	75	15	247	30	19	8	41	1.81
46699525--46699876	48	6.9	53	71	18	205	30	20	7	40	1.81
46699986--46700134	76	2.0	75	85	9	205	38	15	18	27	1.91
46699986--46700157	25	7.0	26	81	10	177	37	15	19	27	1.92
46700351--46700399	23	2.1	24	85	11	66	14	20	24	40	1.89
46719359--46719527	91	1.8	93	88	5	263	28	28	19	23	1.98
46719939--46719996	29	2.0	29	89	0	89	31	25	5	37	1.78
46726887--46727057	93	1.8	93	92	2	290	29	27	20	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295