genome.fa.s2.2.7.7.80.10.50.1000.274.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  274  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93496765--93496877	56	2.0	56	98	0	217	28	6	19	46	1.74
93500070--93500121	18	2.8	18	88	2	77	21	7	0	71	1.11
93502375--93502425	25	2.0	26	84	3	68	39	11	9	39	1.75
93502612--93502735	48	2.5	48	83	5	133	50	2	4	42	1.34
93502527--93502867	175	1.9	175	98	0	664	50	4	5	40	1.44
93512255--93512451	27	7.4	27	84	3	229	24	18	19	37	1.94
93515501--93515747	40	6.2	40	90	3	376	23	22	27	26	2.00
93522389--93522635	41	6.0	41	84	0	287	33	22	20	23	1.97
93522381--93522630	124	2.0	123	85	2	331	34	22	20	23	1.97
93522676--93522710	17	2.0	18	88	5	54	20	0	11	68	1.20
93522878--93522904	14	1.9	14	100	0	54	44	29	3	22	1.70
93523123--93523205	35	2.4	35	79	0	85	16	1	31	50	1.53
93523188--93523256	22	3.2	21	80	10	68	21	1	30	46	1.60
93523353--93523394	22	1.9	22	100	0	84	23	0	28	47	1.52
93523642--93523679	20	1.9	20	94	0	67	39	10	23	26	1.87
93523663--93523739	41	1.9	40	89	7	120	36	15	20	27	1.93
93530010--93530071	28	2.2	28	91	0	97	35	4	24	35	1.77
93530010--93530055	14	3.3	14	84	0	65	36	4	26	32	1.76
93530023--93530071	14	3.5	13	78	10	53	34	4	24	36	1.75
93531808--93531846	19	2.1	19	95	0	69	51	10	5	33	1.58
93531965--93531997	13	2.5	14	85	14	52	75	0	24	0	0.80
93532530--93532555	10	2.6	10	100	0	52	46	7	30	15	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93532692--93532741	15	3.3	15	82	0	73	36	2	12	50	1.51
93536663--93536695	17	1.9	17	93	0	57	60	6	0	33	1.21
93536820--93536883	33	1.9	33	87	0	92	65	0	10	23	1.24
93537539--93537576	20	1.9	19	89	5	58	63	2	2	31	1.22
93539257--93539339	31	2.8	29	77	10	87	37	6	8	48	1.58
93539482--93539538	29	1.9	30	85	3	80	49	15	7	28	1.71
93547601--93547776	92	1.9	92	97	0	334	30	11	15	42	1.83
93550091--93550131	20	2.0	20	100	0	82	24	4	26	43	1.74
93550739--93550861	43	2.8	44	81	12	132	25	15	25	34	1.95
93555033--93555102	24	2.8	24	81	12	88	25	21	20	32	1.97
93555528--93555553	8	3.2	8	100	0	52	34	11	15	38	1.83
93564113--93564156	10	4.4	10	82	0	52	70	2	2	25	1.10
93565965--93566048	5	16.8	5	75	17	61	75	0	3	21	0.96
93565966--93566046	8	9.9	8	71	19	60	74	0	3	22	0.98
93577106--93577141	15	2.5	15	95	4	65	5	22	11	61	1.50
93578248--93578290	10	4.3	10	82	11	61	69	2	6	20	1.23
93580728--93580867	60	2.3	61	84	8	180	25	24	20	29	1.99
93580727--93580828	28	3.5	28	69	19	82	24	27	20	27	1.99
93583454--93583517	34	1.9	33	81	12	78	48	4	3	43	1.39
93589282--93589387	41	2.6	41	79	5	115	22	19	27	30	1.98
93589880--93589959	35	2.3	35	91	0	133	32	7	21	38	1.81
93591117--93591178	30	2.1	30	100	0	124	9	35	3	51	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93606559--93606595	18	2.1	18	100	0	74	40	0	10	48	1.38
93613096--93613177	43	1.9	43	92	5	139	29	31	15	23	1.95
93615645--93615742	49	2.0	49	100	0	196	30	18	16	34	1.93
93621301--93621415	29	4.0	29	74	5	90	26	31	13	29	1.93
93622918--93623044	43	3.0	43	89	4	193	22	30	22	24	1.99
93630455--93630503	24	2.0	24	81	14	57	38	8	2	51	1.43
93640930--93641105	46	3.8	46	80	10	214	21	21	29	28	1.98
93640926--93641097	93	1.8	93	96	0	317	20	20	30	27	1.98
93643981--93644034	21	2.5	21	82	11	56	59	14	0	25	1.36
93648843--93648874	16	1.9	17	93	6	57	53	3	6	37	1.42
93652941--93652987	6	7.5	6	85	4	58	14	19	0	65	1.26
93663586--93663641	26	2.2	26	80	6	60	26	19	17	35	1.94
93676907--93677130	40	5.7	40	86	7	273	25	21	27	25	1.99
93676907--93677130	79	2.8	81	86	8	291	25	21	27	25	1.99
93679007--93679179	93	1.9	93	90	0	274	26	29	21	22	1.99
93679000--93679175	46	3.8	46	76	15	182	27	28	21	22	1.99
93679050--93679194	46	3.1	46	73	14	145	29	28	20	21	1.98
93684530--93684701	93	1.8	93	92	0	290	26	29	22	21	1.99
93684522--93684697	46	3.8	46	79	10	196	27	28	21	21	1.99
93684573--93684716	46	3.1	46	73	14	143	29	29	20	21	1.98
93685950--93686000	26	2.0	25	85	11	68	27	29	17	25	1.98
93702084--93702433	47	7.4	47	92	2	549	28	30	8	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93702134--93702212	25	3.3	25	66	16	76	31	29	5	34	1.79
93702084--93702429	143	2.4	143	94	0	597	28	30	8	32	1.87
93708607--93708677	35	2.0	35	100	0	142	25	21	11	42	1.86
93708738--93708814	38	2.0	38	100	0	154	35	20	12	31	1.91
93712493--93712520	5	5.6	5	100	0	56	39	0	60	0	0.97
93714708--93714912	40	5.2	40	87	2	281	25	27	22	23	2.00
93714708--93714911	80	2.6	80	89	3	322	25	27	22	23	1.99
93722793--93723009	80	2.7	80	87	3	321	24	27	23	24	2.00
93722793--93722997	40	5.2	40	87	2	281	25	27	23	23	2.00
93730577--93730614	17	2.4	17	91	8	62	31	13	0	55	1.38
93731390--93731461	26	2.8	26	95	0	126	33	18	12	36	1.88
93734943--93735089	61	2.4	62	86	3	206	27	17	29	25	1.98
93740172--93740223	27	2.0	26	84	3	68	15	26	21	36	1.93
93740278--93740336	27	2.2	26	84	3	73	22	22	18	37	1.94
93752715--93752846	40	3.3	40	90	3	178	25	27	21	25	2.00
93752715--93752899	79	2.3	82	83	7	229	25	27	22	24	2.00
93758788--93758872	43	2.0	43	82	13	104	25	30	18	24	1.98
93761867--93761931	34	1.9	34	84	12	89	0	49	0	50	1.00
93765297--93765375	29	2.7	30	82	13	110	29	30	15	25	1.96
93773135--93773213	29	2.7	30	82	13	110	29	30	15	25	1.96
93774650--93774683	17	1.9	18	88	5	52	29	2	2	64	1.22
93778115--93778157	21	2.0	21	82	8	52	44	9	11	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93780285--93780320	18	2.0	18	100	0	72	50	16	5	27	1.68
93780453--93780717	39	6.8	39	93	3	401	31	27	20	20	1.98
93784560--93784771	39	5.4	39	84	0	280	29	3	22	45	1.68
93784658--93784726	19	3.6	19	69	18	61	30	0	23	46	1.53
93798047--93798083	18	2.1	18	94	0	65	45	13	21	18	1.84
93798357--93798639	27	10.5	27	82	2	309	39	13	15	30	1.86
93802447--93802520	24	3.3	23	70	14	64	41	4	4	50	1.40
93807797--93807927	42	3.1	42	91	1	210	14	23	33	28	1.94
93809069--93809121	27	2.0	27	81	7	63	37	7	15	39	1.75
93809434--93809482	25	2.0	25	83	0	62	32	12	20	34	1.90
93816161--93816331	93	1.8	93	93	0	297	28	28	21	21	1.98
93816158--93816328	46	3.7	45	80	10	202	29	28	20	21	1.98
93823495--93823532	19	2.0	20	85	15	53	39	23	0	36	1.55
93828699--93829061	38	8.8	38	73	16	179	30	14	23	31	1.94
93828768--93829016	47	5.7	47	71	19	232	30	14	22	32	1.93
93828737--93829054	85	3.7	85	96	0	582	30	14	23	31	1.94
93829204--93829232	13	2.2	13	100	0	58	65	0	17	17	1.27
93839834--93840006	46	3.7	46	79	10	199	21	20	27	30	1.98
93839831--93840001	93	1.8	93	92	0	288	21	20	28	29	1.98
93850005--93850071	33	2.0	33	91	0	107	41	14	13	29	1.85
93854123--93854153	15	2.1	15	100	0	62	45	0	19	35	1.51
93856281--93856315	13	2.7	13	95	0	61	17	31	37	14	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93857452--93857478	11	2.5	11	100	0	54	14	7	40	37	1.74
93874370--93874409	13	3.1	13	79	13	55	25	2	0	72	0.97
93874370--93874433	26	2.4	25	82	12	67	26	6	1	65	1.25
93874398--93874463	25	2.6	25	83	7	71	30	9	3	57	1.45
93874442--93874483	21	2.0	22	85	4	59	40	7	2	50	1.43
93875311--93875361	16	3.4	16	68	15	54	49	7	1	41	1.43
93875311--93875368	29	2.0	29	100	0	116	48	6	3	41	1.47
93878924--93879085	43	3.8	43	75	5	150	29	17	22	30	1.97
93882901--93882940	21	1.9	21	85	10	55	27	10	27	35	1.89
93884678--93884743	25	2.6	25	83	4	80	24	18	21	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295