genome.fa.s2.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  135  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46099105--46099144	19	2.0	20	86	13	57	77	2	5	15	1.04
46099400--46099428	13	2.1	14	93	6	51	13	0	0	86	0.58
46107534--46107582	23	2.1	23	92	0	80	55	6	28	10	1.57
46118694--46118815	47	2.6	45	81	11	140	29	18	28	23	1.97
46118699--46118955	140	1.8	140	81	3	320	26	18	29	24	1.98
46126241--46126293	27	2.1	24	82	10	61	45	1	1	50	1.23
46140215--46140257	21	2.0	22	81	4	52	62	4	0	32	1.15
46140446--46140475	3	10.0	3	92	0	51	70	0	0	30	0.88
46140564--46140618	23	2.4	23	85	8	69	58	7	3	30	1.43
46140575--46140645	3	23.3	3	74	8	63	61	4	2	30	1.29
46141235--46141272	16	2.4	16	90	0	58	13	2	2	81	0.90
46157509--46157566	10	5.7	10	81	4	71	43	24	20	12	1.86
46157503--46157563	31	2.0	31	100	0	122	44	22	19	13	1.85
46165417--46165476	26	2.4	25	83	10	77	38	5	0	56	1.21
46166550--46166600	18	2.7	19	81	6	59	49	0	1	49	1.12
46171030--46171068	21	2.0	20	85	10	53	10	30	20	38	1.86
46178073--46178136	32	2.0	32	96	0	119	40	15	10	32	1.82
46189936--46190323	47	8.3	47	95	2	681	32	8	28	29	1.86
46189936--46190461	94	5.7	94	87	7	767	32	8	29	29	1.87
46189936--46190403	141	3.4	139	92	6	764	33	8	28	29	1.86
46190290--46190357	34	2.0	34	97	0	127	36	5	25	32	1.80
46190243--46190404	81	2.0	81	96	0	297	33	7	27	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46190324--46190461	47	2.9	47	86	0	186	32	9	31	26	1.88
46190580--46190658	37	2.1	37	86	4	106	25	17	31	25	1.97
46197608--46197717	28	3.9	28	92	0	166	34	10	25	30	1.89
46199792--46199946	43	3.7	43	79	8	183	23	16	29	30	1.96
46200100--46200130	16	1.9	16	93	0	53	48	6	9	35	1.62
46211771--46211938	39	4.3	39	89	0	237	32	20	25	21	1.98
46211771--46211964	78	2.5	78	83	2	203	31	21	25	21	1.98
46213144--46213179	17	2.1	17	100	0	72	19	11	0	69	1.18
46214728--46214779	26	2.0	26	85	7	70	34	19	7	38	1.80
46214737--46214787	26	2.0	26	100	0	102	33	15	7	43	1.76
46216445--46216469	13	1.9	13	100	0	50	24	0	4	72	1.02
46224820--46224880	30	2.0	30	83	0	77	44	4	19	31	1.72
46225615--46225798	67	2.8	64	77	8	194	28	16	30	23	1.97
46230454--46230612	54	2.9	53	84	4	194	49	16	17	15	1.80
46232057--46232174	43	2.7	45	74	10	109	29	16	26	27	1.97
46231792--46232587	176	4.5	176	84	2	909	31	17	23	27	1.97
46231792--46232586	353	2.3	354	84	2	1012	31	17	23	27	1.97
46235145--46235183	6	6.7	6	85	5	53	15	0	5	79	0.90
46235145--46235183	17	2.2	18	86	4	53	15	0	5	79	0.90
46250431--46250507	22	3.6	22	72	17	65	27	3	5	63	1.33
46258940--46259000	23	2.7	23	92	0	104	31	31	13	24	1.93
46261953--46262003	26	2.0	26	88	7	77	33	5	11	49	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46262607--46262668	3	22.0	3	71	12	51	67	1	27	3	1.15
46262607--46262666	17	3.4	17	78	13	59	68	1	26	3	1.15
46268905--46268940	18	2.1	18	89	5	56	30	2	0	66	1.06
46277090--46277134	11	4.3	11	75	18	51	24	2	0	73	0.95
46290652--46290845	49	3.9	49	81	1	244	27	27	18	26	1.98
46291072--46291125	27	2.0	27	85	0	72	38	14	7	38	1.75
46293462--46293496	10	3.4	10	84	7	52	82	2	0	14	0.77
46294095--46294508	152	2.7	151	82	4	494	42	9	4	43	1.56
46303053--46303354	40	7.6	40	86	4	344	26	27	20	25	1.99
46303053--46303354	159	1.9	159	81	5	369	26	27	20	25	1.99
46303051--46303352	119	2.5	119	82	5	333	26	28	20	25	1.99
46303286--46303363	40	1.9	41	82	10	97	26	28	20	24	1.99
46310198--46310404	39	5.3	40	90	4	289	24	28	21	25	1.99
46310198--46310380	79	2.3	78	90	2	278	25	27	21	25	1.99
46316452--46316481	14	2.1	14	93	0	51	36	3	0	60	1.14
46317654--46317703	20	2.4	21	80	6	57	2	24	0	74	0.93
46317650--46317708	14	4.1	15	72	16	61	1	23	0	74	0.91
46317722--46317758	13	3.1	13	77	22	53	8	32	0	59	1.27
46326286--46326321	6	5.7	6	87	12	54	19	0	0	80	0.71
46335980--46336040	27	2.3	27	85	0	86	42	16	27	13	1.85
46336105--46336166	17	3.7	17	74	8	65	80	0	17	1	0.79
46336132--46336166	6	5.8	6	87	12	54	82	0	14	2	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46338189--46338219	14	2.2	14	94	0	53	35	9	25	29	1.88
46338879--46338938	19	3.1	19	85	7	84	50	3	5	41	1.41
46342434--46342481	20	2.4	20	82	6	62	52	16	8	22	1.71
46343036--46343100	33	2.0	33	87	0	94	23	15	4	56	1.57
46345241--46345279	15	2.6	15	83	0	51	58	2	0	38	1.12
46345424--46345485	31	2.0	32	83	3	81	43	8	6	41	1.60
46346787--46346831	23	2.0	23	86	4	65	37	31	8	22	1.85
46353962--46353987	13	2.0	13	100	0	52	38	0	0	61	0.96
46353963--46354007	13	2.9	16	84	12	51	40	2	0	57	1.11
46353971--46354173	98	2.1	97	87	4	293	45	3	1	49	1.30
46362932--46363112	99	1.8	99	81	7	224	50	1	5	42	1.35
46363874--46363913	13	3.1	14	79	17	50	2	25	2	70	1.13
46371515--46371684	46	3.7	44	80	10	198	20	19	30	30	1.97
46376964--46377423	158	2.9	156	82	4	548	37	16	13	32	1.87
46377499--46377700	81	2.5	82	95	1	361	26	6	16	50	1.69
46389258--46389300	18	2.6	16	82	13	59	46	0	0	53	1.00
46389263--46389305	18	2.4	18	96	0	77	46	0	2	51	1.13
46390617--46390649	17	1.9	17	100	0	66	12	12	24	51	1.73
46391832--46391869	19	2.0	20	85	15	53	39	23	0	36	1.55
46392099--46392268	93	1.8	93	89	0	268	28	26	21	23	1.99
46392094--46392262	46	3.7	46	76	10	182	29	26	20	23	1.99
46392689--46392748	30	2.0	30	83	0	75	33	25	3	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46394595--46394648	25	2.1	27	89	6	85	40	3	0	55	1.17
46394980--46395005	13	2.0	13	100	0	52	38	0	15	46	1.46
46397131--46397206	32	2.4	32	77	14	86	25	1	15	57	1.46
46397171--46397236	21	3.0	21	73	16	69	30	0	13	56	1.38
46398480--46398547	28	2.5	25	77	13	64	61	0	4	33	1.16
46398623--46398666	19	2.2	20	96	4	81	50	13	11	25	1.75
46398644--46398840	65	3.0	65	95	0	340	42	16	11	29	1.83
46399731--46399790	22	2.7	22	77	12	61	40	1	0	58	1.08
46400495--46400767	100	2.7	106	84	10	370	31	1	15	52	1.50
46401160--46401199	20	2.0	20	100	0	80	40	0	10	50	1.36
46402813--46402883	33	2.2	33	84	5	90	12	45	15	26	1.82
46403094--46403330	77	3.1	76	84	5	291	30	8	6	54	1.55
46406194--46406237	17	2.6	17	92	0	70	61	13	0	25	1.32
46407651--46407691	20	2.0	20	85	4	55	46	2	0	51	1.14
46408064--46408145	29	2.8	29	77	17	87	26	13	6	53	1.63
46408064--46408145	30	2.7	31	78	16	91	26	13	6	53	1.63
46408384--46408449	28	2.3	29	82	5	73	54	3	1	40	1.25
46414074--46414125	25	2.1	24	82	10	61	30	3	0	65	1.10
46418130--46418213	33	2.5	34	77	12	102	65	5	4	23	1.34
46419919--46419952	5	6.6	5	86	6	50	79	2	0	17	0.86
46419919--46419957	20	2.0	20	85	10	53	76	5	2	15	1.06
46425087--46425232	51	2.9	49	81	4	184	28	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46429089--46429159	31	2.4	30	75	17	76	32	16	4	46	1.67
46430654--46430734	32	2.5	32	80	4	92	28	3	16	51	1.61
46433292--46433330	18	2.1	19	85	4	53	43	15	12	28	1.83
46433772--46433807	17	2.1	18	94	5	65	11	44	33	11	1.75
46437264--46437297	17	2.1	15	89	10	50	14	8	0	76	1.01
46437270--46437296	13	2.1	13	100	0	54	14	7	0	77	0.97
46438072--46438112	15	2.6	16	84	7	57	39	0	0	60	0.96
46438150--46438174	11	2.3	11	100	0	50	48	8	16	28	1.74
46438776--46439096	112	3.0	102	78	12	299	28	0	12	57	1.41
46438556--46439064	216	2.3	218	81	10	614	27	1	13	58	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295