genome.fa.s2.2.7.7.80.10.50.1000.268.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  268  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91733956--91734129	40	4.3	40	85	2	215	23	16	26	33	1.96
91736808--91736843	17	2.2	17	90	9	58	0	30	0	69	0.89
91736818--91736897	26	3.1	25	72	15	74	5	22	3	68	1.25
91736828--91736875	21	2.4	19	78	18	53	4	20	4	70	1.21
91736913--91736947	5	7.0	5	100	0	70	60	0	0	40	0.97
91737736--91737777	21	1.9	21	85	9	57	19	4	16	59	1.54
91738439--91738476	19	2.0	19	85	10	51	55	15	15	13	1.70
91739045--91739095	23	2.2	23	100	0	102	13	39	31	15	1.87
91744708--91744933	114	2.0	114	98	0	434	24	26	7	41	1.82
91744938--91745414	6	80.8	6	77	3	394	0	59	1	38	1.11
91744938--91745414	10	48.5	10	78	3	394	0	59	1	38	1.11
91744940--91745414	12	38.8	12	79	10	435	0	59	1	38	1.11
91745400--91745541	71	2.0	71	98	0	275	33	20	4	41	1.72
91747486--91747525	20	2.1	19	95	4	71	62	0	5	32	1.17
91748924--91748964	22	1.9	21	85	5	55	56	4	0	39	1.21
91750454--91750520	3	22.3	3	79	0	71	29	1	35	32	1.67
91752063--91752107	21	2.1	21	84	8	56	71	0	8	20	1.12
91773155--91773231	23	3.4	21	75	12	73	20	23	20	35	1.96
91773167--91773242	23	3.3	23	83	7	84	25	23	19	31	1.98
91773191--91773256	23	2.8	23	84	6	80	25	24	16	33	1.96
91773426--91773475	20	2.5	20	86	0	64	38	10	16	36	1.82
91773442--91773519	20	3.8	20	76	8	70	33	8	17	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91773442--91773519	40	1.9	40	84	7	104	33	8	17	39	1.81
91778543--91778586	22	1.9	24	90	9	74	0	13	15	70	1.17
91779823--91779951	68	1.9	68	80	6	154	24	24	20	30	1.99
91785021--91785060	18	2.3	18	91	4	64	37	5	0	57	1.21
91787609--91787653	16	2.8	16	80	9	56	44	17	24	13	1.85
91787603--91787653	24	2.1	24	85	0	66	47	17	23	11	1.81
91787864--91787979	29	4.0	28	76	8	92	26	13	30	29	1.94
91790116--91790173	5	10.8	5	80	12	62	43	0	1	55	1.10
91790117--91790174	8	6.7	9	74	21	61	43	0	1	55	1.10
91790119--91790174	12	4.5	12	81	16	69	42	0	1	55	1.10
91791495--91791524	2	15.0	2	100	0	60	0	0	50	50	1.00
91791680--91791736	15	3.9	15	88	2	89	35	0	12	52	1.39
91791676--91791734	30	2.0	28	93	6	100	32	0	11	55	1.36
91792109--91792195	21	4.0	23	77	10	83	14	20	25	39	1.91
91793672--91793797	42	3.0	41	81	5	144	23	19	24	32	1.97
91793685--91793797	43	2.7	42	80	6	138	24	20	23	30	1.98
91801586--91801748	43	3.8	42	82	6	168	25	16	25	33	1.96
91801631--91801748	42	2.8	41	82	6	130	24	16	26	32	1.96
91804481--91804580	49	2.1	49	96	1	184	26	6	9	59	1.51
91804598--91804635	20	1.9	20	94	0	67	39	0	7	52	1.31
91805605--91805688	26	3.2	26	98	0	159	33	3	25	38	1.73
91807168--91807220	26	2.0	26	85	7	72	37	22	15	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91808870--91808897	12	2.3	12	100	0	56	10	21	53	14	1.70
91810564--91810613	24	2.1	24	85	7	66	28	20	24	28	1.99
91812495--91812578	26	3.2	26	96	0	150	33	4	25	36	1.77
91814062--91814114	26	2.0	26	85	7	72	37	22	15	24	1.92
91818794--91818819	12	2.2	12	100	0	52	61	0	0	38	0.96
91820211--91820261	22	2.3	21	75	15	50	62	0	5	31	1.19
91820535--91820604	7	9.9	7	80	14	81	57	0	0	42	0.99
91820533--91820601	15	4.7	15	76	20	74	55	0	0	44	0.99
91820533--91820629	43	2.2	44	87	7	135	54	2	3	40	1.28
91825556--91825597	22	1.9	22	85	9	59	45	7	7	40	1.59
91829750--91829799	22	2.3	22	86	6	66	64	10	4	22	1.41
91841183--91841230	13	3.8	13	76	18	57	60	0	2	37	1.09
91841745--91841787	13	3.4	13	80	6	52	30	4	0	65	1.13
91842441--91842493	25	2.1	25	85	3	70	56	16	0	26	1.41
91849164--91849316	42	3.7	41	76	5	155	30	16	23	28	1.97
91849162--91849316	84	1.9	83	80	4	186	30	17	23	28	1.97
91859712--91859757	16	3.1	16	84	12	62	78	4	17	0	0.91
91859714--91859764	26	1.9	26	84	4	66	74	3	21	0	0.98
91862851--91862908	30	1.9	30	92	0	98	17	39	29	13	1.88
91868520--91868566	21	2.2	22	82	17	64	48	0	17	34	1.47
91869242--91869514	33	8.3	33	84	4	243	37	11	20	30	1.88
91869438--91869547	33	3.3	33	80	0	121	34	14	23	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91870485--91870516	13	2.5	13	100	0	64	6	31	37	25	1.81
91870551--91870602	13	3.7	13	72	18	50	19	40	32	7	1.80
91872236--91872346	38	3.0	37	72	18	97	38	1	2	56	1.24
91872296--91872350	20	2.7	20	81	16	67	40	1	1	56	1.21
91872287--91872353	26	2.6	26	79	9	66	37	1	1	59	1.16
91872634--91872671	13	2.8	14	84	4	51	76	0	7	15	1.01
91873731--91873841	45	2.5	45	91	2	179	20	18	18	41	1.91
91873821--91873867	6	7.7	6	87	2	58	19	23	14	42	1.88
91879780--91879814	7	5.0	7	100	0	70	28	14	28	28	1.95
91879771--91879814	21	2.1	21	91	0	70	29	15	27	27	1.96
91884762--91885030	46	5.8	45	72	13	172	28	18	28	23	1.98
91888009--91888054	16	2.5	19	83	16	62	52	2	0	45	1.13
91888679--91888718	21	2.0	21	90	9	66	40	0	0	60	0.97
91896087--91896157	31	2.3	31	95	0	124	33	12	29	23	1.92
91896220--91896258	19	2.0	20	85	5	53	43	20	0	35	1.52
91897127--91897159	9	3.7	9	91	0	57	39	24	12	24	1.89
91897127--91897161	18	1.9	18	100	0	70	37	22	11	28	1.89
91901442--91901482	21	2.0	21	90	0	64	19	29	21	29	1.98
91907561--91907914	175	2.0	175	100	0	708	35	9	24	30	1.86
91911721--91911765	19	2.2	21	88	7	67	44	8	0	46	1.34
91912574--91912598	10	2.5	10	100	0	50	24	0	0	76	0.80
91915314--91915341	13	2.2	13	100	0	56	42	28	0	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91919666--91919728	24	2.6	25	80	7	67	31	0	15	52	1.44
91927804--91927861	26	2.2	26	87	6	82	15	25	20	37	1.92
91927811--91927869	26	2.2	27	90	3	93	15	23	23	37	1.93
91927939--91927992	24	2.2	24	84	12	67	16	20	22	40	1.91
91934835--91934913	28	2.8	28	86	0	104	34	11	25	29	1.91
91937699--91937730	5	6.2	5	96	3	55	78	0	3	18	0.89
91938257--91938281	13	1.9	13	100	0	50	88	0	0	12	0.53
91943733--91943821	42	2.1	42	93	0	151	50	14	5	29	1.65
91947622--91947710	42	2.1	42	91	0	142	50	13	5	30	1.64
91947735--91947774	19	2.2	18	90	4	62	42	17	2	37	1.63
91958023--91958062	21	1.9	21	84	0	53	45	5	5	45	1.47
91958601--91958638	16	2.4	16	91	4	60	10	0	36	52	1.36
91958643--91958713	34	2.1	34	91	0	115	25	0	26	47	1.52
91958709--91958765	29	2.0	29	83	10	73	47	0	14	38	1.44
91958729--91958838	34	3.2	32	75	14	114	43	0	16	40	1.48
91958916--91959274	125	2.9	124	85	4	445	40	14	16	28	1.88
91962072--91962120	25	2.0	25	95	0	89	30	24	4	40	1.74
91962208--91962234	13	2.1	13	100	0	54	33	37	7	22	1.82
91962726--91962823	40	2.5	40	100	0	196	26	26	19	27	1.99
91971046--91971120	21	3.6	21	83	0	96	17	22	18	41	1.90
91974075--91974107	7	4.4	8	85	14	52	51	0	0	48	1.00
91974075--91974107	2	17.5	2	87	12	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91974170--91974207	19	2.0	19	100	0	76	31	21	10	36	1.87
91987658--91987691	17	2.1	17	88	5	52	32	0	2	64	1.08
91988897--91988921	6	4.2	6	100	0	50	16	0	48	36	1.46
91999348--91999512	42	4.0	42	84	3	219	20	19	26	33	1.96
91999348--91999532	83	2.2	83	84	5	232	21	19	24	34	1.96
91999348--91999532	42	4.5	43	82	8	208	21	19	24	34	1.96
91999754--91999797	18	2.4	18	96	0	79	38	2	15	43	1.60
92002278--92002310	14	2.4	14	94	0	57	87	3	0	9	0.63
92002280--92002335	19	2.9	19	83	2	58	78	1	1	17	0.92
92003821--92003877	20	2.5	22	81	18	73	22	14	0	63	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295