genome.fa.s2.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  134  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45877455--45877670	83	2.7	81	91	3	362	32	21	26	19	1.97
45880694--45880724	3	10.7	3	93	6	55	67	0	0	32	0.91
45880694--45880724	11	2.7	11	95	5	53	67	0	0	32	0.91
45881744--45881781	14	2.9	13	81	11	51	18	13	10	57	1.63
45885425--45885449	9	2.8	9	100	0	50	32	0	0	68	0.90
45886352--45886405	28	2.0	27	85	7	74	44	1	24	29	1.64
45886895--45887040	43	3.4	43	82	2	161	30	14	22	32	1.94
45894494--45894638	43	3.4	42	82	1	155	28	15	24	31	1.95
45894956--45895042	43	2.0	43	84	0	111	25	19	16	39	1.92
45898420--45898597	41	4.4	41	78	4	153	27	29	20	21	1.98
45901011--45901043	16	2.0	17	88	5	50	45	9	6	39	1.61
45904021--45904192	93	1.8	93	94	0	308	27	30	21	20	1.98
45904013--45904188	46	3.8	46	81	10	214	28	29	21	21	1.98
45906559--45906622	15	4.4	15	84	11	89	60	12	15	10	1.58
45915882--45916057	46	3.8	46	76	14	191	21	19	28	30	1.98
45915879--45916050	93	1.8	93	92	2	292	21	20	29	29	1.98
45924731--45924908	27	6.6	27	83	3	205	26	15	28	29	1.96
45924732--45924887	82	1.9	81	88	3	233	26	15	28	29	1.96
45924728--45924908	82	2.2	81	83	2	229	27	15	27	29	1.96
45934610--45934645	6	6.3	6	90	9	58	16	0	0	83	0.65
45934610--45934645	11	3.2	11	92	7	63	16	0	0	83	0.65
45934668--45934710	11	3.7	12	79	14	54	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45937706--45937736	15	2.1	15	93	0	53	32	19	12	35	1.90
45952332--45952364	9	3.7	9	91	0	57	33	30	0	36	1.58
45955551--45955585	16	2.1	17	89	5	54	54	14	14	17	1.72
45960399--45960581	96	1.9	96	95	0	330	43	20	18	18	1.89
45960956--45961019	32	2.0	32	96	0	119	28	15	7	48	1.73
45961958--45961987	10	2.8	11	90	10	53	16	0	0	83	0.65
45963702--45963751	7	7.6	7	82	13	54	14	0	2	84	0.72
45963702--45963750	6	7.7	6	88	6	62	14	0	2	83	0.73
45966706--45966858	67	2.3	67	85	3	191	32	7	19	39	1.81
45966914--45966989	39	1.9	39	86	0	107	23	5	25	46	1.73
45966921--45967010	39	2.3	39	82	0	99	25	4	24	45	1.72
45970248--45970326	32	2.5	32	83	4	88	22	27	35	13	1.93
45970316--45970356	18	2.4	17	84	8	55	17	29	39	14	1.89
45971174--45971199	13	2.0	13	100	0	52	38	7	15	38	1.76
45976313--45976530	43	5.1	43	80	4	251	26	16	27	30	1.96
45976809--45976853	23	1.9	24	86	13	67	40	0	17	42	1.50
45987377--45987410	6	5.5	6	96	3	59	20	0	0	79	0.73
45988426--45988482	28	2.1	27	93	3	96	45	7	8	38	1.62
45989542--45989580	20	2.0	19	95	5	69	15	2	0	82	0.79
45996500--45996560	24	2.5	23	82	12	70	54	3	13	29	1.55
45996687--45996803	23	5.3	22	74	10	96	62	2	3	31	1.25
45996708--45996802	20	4.3	22	80	16	99	64	3	1	31	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45996702--45996806	21	4.9	20	77	18	79	61	2	1	33	1.21
45996708--45996803	46	2.2	42	83	12	122	64	3	1	31	1.16
45996717--45996820	18	6.3	16	68	16	61	62	2	1	32	1.21
45997036--45997193	3	52.7	3	67	18	71	60	2	6	31	1.35
45998930--45998963	13	2.6	13	90	0	50	64	2	11	20	1.39
45998949--45999107	87	1.8	87	84	2	221	30	19	19	30	1.96
45999026--46000030	74	13.2	75	76	11	719	32	20	17	29	1.95
45999117--45999695	225	2.6	214	83	7	755	30	19	17	32	1.95
45999026--45999695	297	2.3	293	81	7	730	30	19	17	32	1.95
45999432--45999692	143	1.8	144	87	2	391	29	18	17	34	1.94
46001137--46001197	30	2.0	30	100	0	122	19	27	19	32	1.96
46004430--46004537	26	4.2	26	86	0	162	33	6	22	37	1.80
46006314--46006376	13	4.9	12	72	12	54	38	25	7	28	1.84
46006313--46006376	26	2.5	26	78	0	83	37	25	7	29	1.84
46017489--46017549	24	2.5	23	82	12	70	54	3	13	29	1.55
46017676--46017778	21	4.8	22	80	10	106	58	2	3	34	1.31
46017674--46017790	23	5.2	23	77	8	107	59	2	3	34	1.27
46017676--46017794	44	2.8	42	80	13	134	59	2	3	34	1.27
46017991--46018022	17	1.9	16	93	6	55	53	12	0	34	1.39
46018052--46018083	16	1.9	17	93	6	57	50	3	12	34	1.56
46018100--46018175	14	5.4	14	80	12	84	65	2	6	25	1.29
46018100--46018186	3	29.7	3	70	17	58	64	2	5	27	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46018104--46018184	41	2.0	41	87	2	117	65	2	6	25	1.29
46021169--46021346	27	6.6	27	82	3	178	30	28	14	26	1.95
46021169--46021346	54	3.3	55	82	3	200	30	28	14	26	1.95
46026302--46026338	3	12.3	3	94	0	65	64	0	2	32	1.07
46026440--46026477	11	3.5	11	85	7	60	63	0	5	31	1.17
46026439--46026479	21	2.0	21	100	0	82	63	0	4	31	1.15
46026565--46026691	4	31.8	4	69	9	71	66	3	10	20	1.36
46026568--46026703	53	2.7	47	72	17	112	65	2	10	21	1.36
46033679--46033719	15	2.7	14	85	14	55	24	0	2	73	0.96
46037165--46037206	21	2.0	22	85	4	59	47	11	0	40	1.40
46047740--46047780	3	14.3	3	80	10	50	0	29	0	70	0.87
46047740--46047780	17	2.4	17	87	0	64	0	29	0	70	0.87
46048665--46048844	6	29.8	6	73	15	149	49	13	16	20	1.79
46048688--46048844	30	5.4	30	78	12	175	49	14	15	21	1.80
46048962--46049027	27	2.5	26	85	7	87	37	22	22	16	1.93
46048962--46049035	27	2.8	27	78	13	82	36	21	24	17	1.95
46048986--46049043	27	2.1	27	84	6	73	36	27	20	15	1.93
46049200--46049258	22	2.7	22	81	0	64	32	22	25	20	1.98
46049346--46049428	27	3.1	26	87	5	112	37	21	21	19	1.94
46049627--46049822	27	7.3	27	83	2	205	26	20	17	35	1.95
46049629--46049822	81	2.4	82	84	1	239	26	21	16	35	1.94
46049827--46050319	27	18.3	27	84	4	577	41	9	21	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46052147--46052180	18	1.9	17	88	5	50	52	11	11	23	1.70
46052168--46052375	6	34.3	6	74	14	178	48	13	17	20	1.81
46052200--46052375	79	2.2	79	92	4	293	47	14	17	20	1.82
46052493--46052566	27	2.8	27	78	13	82	36	20	24	18	1.95
46052517--46052574	27	2.1	27	84	6	73	36	25	20	17	1.94
46052877--46052959	27	3.1	26	87	5	112	37	21	21	19	1.94
46053158--46053353	27	7.3	27	84	0	212	26	18	18	36	1.94
46053158--46053346	54	3.5	54	85	0	243	25	19	19	35	1.95
46053365--46053931	27	21.0	27	85	5	704	39	8	23	27	1.85
46053365--46053931	81	7.0	81	88	4	786	39	8	23	27	1.85
46055141--46055180	21	1.9	21	85	10	55	60	12	17	10	1.59
46061525--46061550	2	13.0	2	100	0	52	0	50	0	50	1.00
46061629--46061675	20	2.3	21	85	10	62	14	4	6	74	1.17
46061630--46061675	10	4.6	10	80	17	51	15	4	6	73	1.19
46065175--46065264	42	2.1	42	89	0	135	51	13	7	27	1.68
46065289--46065328	19	2.2	18	90	4	62	45	12	2	40	1.56
46069055--46069143	42	2.1	42	89	0	133	50	15	6	26	1.69
46069168--46069207	19	2.2	18	90	4	62	42	12	2	42	1.56
46073926--46073951	3	8.7	3	100	0	52	69	0	0	30	0.89
46075053--46075113	31	2.0	31	83	0	77	40	3	8	47	1.49
46075657--46075691	18	1.9	18	94	0	61	31	11	20	37	1.88
46075827--46075884	26	2.1	27	81	15	66	24	39	0	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46078442--46078543	49	2.1	49	90	3	161	31	27	14	26	1.95
46078645--46078793	31	4.8	31	86	0	190	26	24	20	28	1.99
46078769--46078897	50	2.5	51	86	2	179	25	22	16	35	1.94
46083841--46083878	19	2.0	19	94	0	67	34	10	23	31	1.89
46084770--46084809	19	2.0	20	86	13	57	77	2	5	15	1.04
46085387--46085663	44	6.4	44	89	3	409	22	32	17	27	1.96
46085361--46085663	128	2.3	129	85	4	412	21	33	17	28	1.96
46085625--46085848	88	2.6	88	92	0	369	27	26	17	28	1.98
46085360--46085765	172	2.4	171	82	7	482	22	30	17	28	1.97
46085944--46086068	61	2.0	64	90	7	204	38	12	16	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295