genome.fa.s2.2.7.7.80.10.50.1000.267.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  267  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91571183--91571453	125	2.1	127	88	2	393	29	16	15	37	1.90
91571507--91571601	34	2.9	32	83	7	127	47	14	1	36	1.52
91573408--91573469	26	2.4	26	94	5	108	59	19	14	6	1.56
91573855--91573883	13	2.2	13	100	0	58	27	6	31	34	1.83
91573865--91573903	20	2.0	20	89	0	60	30	12	20	35	1.90
91575756--91575841	41	2.1	41	91	0	136	37	20	11	30	1.89
91578533--91578608	18	4.2	18	79	12	84	21	21	17	40	1.91
91578533--91578581	6	8.2	6	95	0	80	18	20	16	44	1.86
91590590--91590641	26	2.0	27	85	11	72	50	21	5	23	1.70
91605251--91605328	33	2.3	33	95	2	138	53	16	15	14	1.73
91605602--91605663	20	3.1	21	80	17	78	43	35	4	16	1.69
91611378--91611438	26	2.3	27	94	2	106	39	9	6	44	1.64
91611380--91611438	27	2.2	26	93	3	100	40	10	6	42	1.65
91612530--91612561	16	2.0	16	100	0	64	25	0	18	56	1.42
91613149--91613207	16	3.8	16	66	8	50	22	6	5	66	1.36
91613336--91613371	12	2.8	13	87	4	56	22	2	0	75	0.94
91613122--91613844	150	4.7	148	84	8	908	29	7	6	56	1.51
91613620--91613665	17	2.7	17	96	0	83	36	4	0	58	1.18
91613122--91613840	301	2.3	300	87	6	989	29	7	6	57	1.50
91613469--91613805	165	2.0	167	89	1	516	29	6	6	57	1.49
91614413--91614438	3	8.7	3	100	0	52	0	65	0	34	0.93
91614437--91614499	3	22.0	3	71	9	51	0	33	3	63	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91614645--91614687	18	2.3	19	92	4	70	6	11	9	72	1.29
91616316--91616402	42	2.1	42	84	4	113	40	11	5	42	1.65
91620058--91620120	31	2.1	31	90	3	101	58	12	3	25	1.49
91621333--91621394	29	2.1	31	81	6	74	35	1	14	48	1.54
91622179--91622213	17	2.1	17	89	10	54	48	17	11	22	1.79
91622676--91622784	54	1.9	57	87	7	161	40	25	1	32	1.66
91622735--91623698	64	15.2	65	71	12	307	36	23	3	35	1.73
91622728--91623811	60	17.3	59	69	14	360	36	23	3	36	1.72
91623011--91623244	69	3.7	59	75	11	148	38	20	3	38	1.69
91622879--91623245	128	2.8	128	80	9	381	38	22	2	35	1.69
91623058--91623244	65	2.8	67	78	6	200	40	19	3	36	1.68
91623858--91623978	64	1.9	64	98	0	233	33	24	4	37	1.77
91624475--91624504	7	4.3	7	95	0	51	0	13	3	83	0.77
91628283--91628352	21	3.3	21	86	4	95	77	0	20	2	0.90
91628283--91628340	22	2.7	22	94	2	100	79	0	17	3	0.87
91635479--91635603	51	2.5	50	75	3	124	36	17	5	40	1.73
91640226--91640473	50	4.8	50	84	5	293	20	29	24	26	1.99
91640225--91640473	99	2.4	104	86	7	348	20	28	24	26	1.99
91640568--91640599	13	2.5	13	94	0	55	56	12	0	31	1.37
91640807--91640866	30	2.0	29	87	3	84	30	21	3	45	1.68
91641430--91641466	5	7.0	5	96	3	56	56	0	0	43	0.99
91641987--91642130	30	4.8	30	92	1	236	26	48	3	21	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91641987--91642130	59	2.4	60	91	2	245	26	48	3	21	1.66
91642704--91642774	25	2.7	26	78	6	81	36	4	1	57	1.27
91642794--91642879	25	3.6	25	80	7	83	31	6	5	55	1.50
91642796--91642886	23	3.9	24	75	11	73	32	6	5	54	1.49
91643006--91643053	16	3.1	15	90	6	69	31	2	2	64	1.16
91643006--91643057	8	6.5	8	82	8	61	30	1	1	65	1.14
91651355--91651528	69	2.5	70	80	7	194	28	14	22	33	1.94
91651532--91651836	73	4.1	73	81	9	350	27	16	21	34	1.95
91651824--91651851	14	2.0	14	100	0	56	14	21	7	57	1.61
91651841--91652007	76	2.2	75	88	1	235	31	16	19	32	1.94
91651988--91652037	14	3.4	14	81	10	55	20	14	4	62	1.47
91652001--91652034	16	2.1	16	88	0	50	17	8	2	70	1.25
91652109--91652360	77	3.3	76	89	3	373	24	18	22	34	1.96
91652249--91652493	134	1.8	135	90	1	402	26	17	24	31	1.97
91652546--91652773	76	3.0	74	85	5	307	28	16	21	32	1.95
91652753--91652802	14	3.6	14	81	7	57	22	12	2	64	1.37
91652767--91652799	15	2.2	15	94	0	57	21	9	0	69	1.15
91653548--91653751	30	6.8	30	93	1	329	24	48	3	23	1.68
91653548--91653751	89	2.3	90	93	1	356	24	48	3	23	1.68
91654334--91654395	25	2.5	25	83	0	88	33	3	0	62	1.11
91654412--91654497	25	3.6	25	80	7	83	31	6	5	55	1.50
91654414--91654504	23	3.9	24	75	11	73	32	6	5	54	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91654627--91654678	8	6.5	8	86	8	70	32	1	0	65	1.04
91664059--91664269	56	3.8	56	88	0	296	31	22	16	29	1.96
91667764--91667863	30	3.3	30	83	2	130	29	47	4	20	1.68
91668436--91668478	21	2.0	23	86	9	63	34	6	2	55	1.39
91668383--91668489	23	4.6	23	73	12	85	35	6	2	55	1.41
91668414--91668490	25	3.2	24	78	17	79	36	6	1	55	1.34
91668460--91668501	16	2.7	16	82	14	52	38	7	0	54	1.28
91668532--91668579	25	1.9	25	91	0	78	33	8	6	52	1.57
91668517--91668585	20	3.2	20	70	21	59	31	5	5	56	1.47
91668727--91668774	16	3.1	15	90	6	69	31	2	2	64	1.16
91668727--91668778	8	6.5	8	82	8	61	30	1	1	65	1.14
91675743--91676154	75	5.5	75	89	3	519	31	16	18	33	1.94
91675743--91676154	152	2.7	152	86	4	514	31	16	18	33	1.94
91676099--91676209	55	2.0	55	89	3	170	27	12	17	42	1.85
91676262--91677071	86	9.9	85	71	14	526	26	18	20	35	1.95
91676343--91677036	160	4.3	157	82	7	734	26	17	20	35	1.95
91676887--91676921	14	2.5	14	95	0	61	20	20	2	57	1.54
91676831--91676998	89	1.9	89	84	2	228	29	19	19	32	1.96
91676901--91677042	75	1.9	77	89	2	225	28	20	18	32	1.96
91676899--91677064	75	2.2	76	85	7	221	27	21	18	32	1.97
91676916--91677510	179	3.2	179	88	5	791	26	16	18	38	1.92
91677337--91677368	14	2.3	14	100	0	64	18	12	6	62	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91677426--91677456	13	2.4	13	94	0	53	19	9	6	64	1.45
91677439--91677474	17	2.1	18	89	5	56	13	5	8	72	1.27
91676977--91677594	179	3.3	191	86	6	716	25	15	18	40	1.90
91677481--91677684	88	2.4	85	87	5	275	23	15	21	39	1.91
91677775--91677805	14	2.2	14	94	0	53	16	9	6	67	1.39
91678769--91678903	30	4.5	30	86	1	166	27	47	3	21	1.68
91679447--91679528	27	3.1	26	82	3	92	36	6	1	56	1.32
91679471--91679539	16	4.6	16	70	23	60	37	5	0	56	1.23
91679573--91679620	25	1.9	25	91	0	78	33	8	6	52	1.57
91679771--91679818	16	3.1	15	90	6	69	31	2	2	64	1.16
91679771--91679822	8	6.5	8	82	8	61	30	1	1	65	1.14
91686433--91686814	44	8.5	44	72	10	220	28	18	24	29	1.98
91686421--91686777	133	2.6	133	84	6	441	28	18	24	28	1.98
91686612--91686791	95	1.9	96	84	3	247	31	18	22	27	1.97
91693417--91693476	29	2.0	30	84	9	79	48	0	3	48	1.18
91693594--91693669	35	2.1	35	85	7	98	44	0	5	50	1.24
91702540--91702654	27	4.3	27	82	2	133	30	15	37	16	1.90
91702534--91702654	54	2.2	54	82	2	163	30	14	37	17	1.90
91706468--91706497	9	3.3	9	90	0	51	40	3	0	56	1.16
91711739--91711799	28	2.2	28	96	0	113	42	13	3	40	1.60
91712153--91712218	24	2.6	25	92	7	116	48	0	0	51	1.00
91713493--91713521	14	2.1	14	100	0	58	13	20	27	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91713883--91713941	9	6.0	10	78	13	52	64	1	0	33	1.04
91713883--91713933	9	5.4	9	81	6	57	64	1	0	33	1.05
91713888--91713940	9	5.3	11	82	17	55	67	0	0	32	0.91
91715035--91715151	62	1.9	62	100	0	234	42	11	17	28	1.84
91721784--91721813	14	2.1	15	93	6	53	43	23	0	33	1.54
91723019--91723202	40	4.6	40	87	2	235	23	14	27	34	1.93
91723016--91723203	80	2.3	80	88	3	270	22	14	27	35	1.93
91727950--91728014	24	2.8	25	79	11	75	38	15	20	26	1.92
91727948--91728024	24	3.3	23	80	8	68	33	16	20	28	1.95
91728956--91729007	26	2.0	26	82	14	63	46	15	0	38	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295