genome.fa.s2.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  99  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31835624--31835750	43	3.0	43	81	12	154	22	18	27	31	1.97
31836643--31836727	42	2.0	42	95	0	152	28	20	29	22	1.98
31848129--31848161	9	3.7	9	95	0	57	54	21	12	12	1.69
31865117--31865384	48	5.6	48	86	3	310	28	27	17	26	1.97
31865153--31865384	96	2.4	96	90	0	347	28	27	17	26	1.98
31865960--31866005	23	2.0	23	100	0	92	43	26	0	30	1.55
31872078--31872249	93	1.8	93	91	2	283	28	29	19	22	1.98
31872070--31872242	46	3.7	46	71	15	149	29	28	18	23	1.98
31874626--31874714	30	3.0	30	80	8	101	57	15	16	10	1.65
31874626--31874705	15	5.4	15	80	7	92	58	13	17	10	1.62
31874637--31874714	15	5.2	15	78	9	79	56	15	16	11	1.67
31877627--31877799	46	3.8	44	75	13	163	28	29	19	22	1.98
31890484--31890529	17	2.7	17	86	6	58	45	10	4	39	1.59
31890670--31890830	68	2.4	68	95	0	286	24	33	16	25	1.96
31891254--31891334	36	2.2	36	82	0	90	46	18	3	30	1.66
31891565--31891688	31	3.8	34	79	12	120	46	14	5	33	1.68
31891575--31891657	36	2.2	36	79	14	89	45	12	6	36	1.66
31895382--31896304	458	2.0	459	91	1	1501	29	15	23	31	1.95
31897927--31897969	19	2.2	20	83	4	52	34	2	20	41	1.65
31898434--31898647	46	4.5	48	75	6	154	31	18	27	23	1.97
31898434--31898647	94	2.3	92	80	6	225	31	18	27	23	1.97
31898667--31898838	49	3.5	49	75	8	163	26	18	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31902146--31902420	27	10.2	27	92	0	415	28	21	8	41	1.82
31904825--31904867	10	4.0	10	77	16	50	44	9	0	46	1.35
31906456--31906575	57	2.1	58	85	4	163	29	18	5	46	1.72
31910837--31910987	22	6.7	22	81	6	151	22	21	20	35	1.96
31910802--31910987	45	4.0	44	76	15	164	24	22	19	33	1.97
31917752--31917857	42	2.5	42	92	3	169	27	34	25	12	1.92
31918915--31918941	13	2.1	13	100	0	54	62	14	7	14	1.51
31919796--31919902	43	2.6	42	77	10	114	31	17	22	28	1.97
31927065--31927107	13	3.4	13	77	6	52	20	6	4	67	1.33
31940697--31940756	31	1.9	31	93	0	102	25	20	11	43	1.85
31942202--31942425	104	2.2	104	92	1	369	31	31	19	18	1.95
31943924--31944011	45	2.0	45	86	0	122	38	22	10	28	1.87
31951351--31951516	40	4.2	40	82	2	192	24	21	27	26	1.99
31959368--31959573	40	5.2	40	86	1	281	24	22	27	26	2.00
31965072--31965169	47	2.1	47	98	0	187	52	8	7	32	1.58
31971537--31971571	16	2.2	16	100	0	70	37	14	11	37	1.82
31971573--31971602	7	4.3	7	91	0	51	26	3	13	56	1.52
31972464--31972527	21	3.0	21	84	4	67	39	48	12	0	1.41
31972475--31972529	21	2.6	21	88	0	83	38	47	14	0	1.45
31975832--31975932	40	2.5	39	82	9	123	30	15	23	29	1.96
31983155--31983372	40	5.5	40	93	1	350	25	27	23	24	2.00
31992334--31992951	126	4.9	125	86	3	749	30	17	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31992334--31992832	253	2.0	249	88	3	743	29	17	17	35	1.93
31993046--31993242	30	6.8	30	67	17	119	41	19	1	37	1.61
31993057--31993123	34	2.0	34	82	5	82	41	19	1	37	1.61
31993110--31993163	22	2.5	22	90	0	81	40	16	1	40	1.59
31993046--31993220	86	2.1	80	82	6	206	41	20	1	37	1.60
31993030--31993410	144	2.7	139	87	5	514	41	18	1	38	1.59
31993254--31993311	22	2.6	22	81	10	73	37	13	1	46	1.54
31993299--31993415	34	3.6	34	74	9	125	43	18	0	36	1.56
31993298--31993418	64	1.9	64	89	0	188	42	18	0	38	1.56
31993767--31993842	38	2.0	37	89	2	116	53	1	2	42	1.23
31994313--31994357	23	2.0	23	82	8	56	68	6	0	24	1.13
32007186--32007334	41	3.5	42	79	5	167	30	14	24	30	1.95
32014644--32014699	27	2.1	27	93	0	94	33	35	3	26	1.74
32016959--32017144	90	2.1	90	98	0	363	34	18	6	39	1.77
32018384--32018562	45	4.2	43	79	6	157	32	25	16	25	1.96
32018450--32018560	45	2.5	43	89	2	159	32	24	16	27	1.96
32022900--32022984	26	3.3	26	78	4	84	36	22	22	18	1.95
32023443--32023472	10	2.8	11	90	10	53	36	26	0	36	1.57
32024970--32025133	67	2.4	67	90	0	256	26	23	14	35	1.93
32029700--32029971	43	6.3	43	87	3	377	30	32	15	21	1.94
32029700--32029971	85	3.2	85	90	3	402	30	32	15	21	1.94
32029713--32029962	128	2.0	128	91	3	405	29	33	15	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32031554--32031645	27	3.4	27	87	0	103	28	23	7	40	1.82
32031635--32031775	54	2.6	54	81	5	162	39	21	9	29	1.86
32031644--32031798	27	5.8	26	78	6	141	41	19	9	29	1.83
32031610--32031857	54	4.6	54	74	5	160	39	20	8	31	1.83
32031812--32031863	27	1.9	27	88	0	77	42	11	9	36	1.74
32031894--32031981	27	3.3	27	75	3	88	42	20	17	20	1.90
32032791--32032860	25	2.8	25	88	0	95	28	24	21	25	1.99
32032791--32032873	25	3.4	25	86	1	87	31	21	21	25	1.98
32033082--32033146	31	2.1	30	88	2	94	30	10	23	35	1.89
32037835--32037863	14	2.1	14	100	0	58	41	0	44	13	1.44
32037802--32037947	68	2.1	73	85	6	203	48	1	36	13	1.50
32037897--32037931	18	1.9	18	94	0	61	60	2	31	5	1.35
32038038--32038124	40	2.2	40	83	4	104	26	16	8	49	1.73
32038459--32038499	18	2.4	17	88	8	57	51	2	0	46	1.14
32039182--32039370	40	4.8	40	78	6	195	26	22	21	28	1.99
32039997--32040041	22	2.0	22	100	0	90	35	13	22	28	1.92
32040304--32040501	61	3.2	60	78	5	202	33	16	21	28	1.95
32043930--32043997	26	2.9	22	80	16	91	39	14	20	25	1.91
32046427--32046466	20	2.0	21	85	5	55	42	0	20	37	1.52
32047128--32047395	46	5.7	46	74	17	171	26	19	29	23	1.98
32047131--32047494	92	3.9	93	80	8	305	27	18	29	24	1.98
32047131--32047489	49	7.6	47	77	9	263	27	18	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32047179--32047489	93	3.3	94	79	12	289	26	18	29	24	1.98
32050745--32050940	63	3.1	62	82	7	227	31	28	16	23	1.96
32061635--32061667	11	2.8	12	81	9	50	57	0	0	42	0.98
32067624--32067661	16	2.4	16	100	0	76	34	18	10	36	1.85
32068971--32069002	14	2.3	14	94	0	55	81	0	18	0	0.70
32072887--32072911	12	2.1	12	100	0	50	60	0	40	0	0.97
32077269--32077294	7	3.7	7	100	0	52	30	0	38	30	1.58
32077294--32077324	15	2.1	15	93	0	53	35	6	35	22	1.80
32081800--32081967	47	3.6	47	77	10	191	29	19	26	24	1.99
32081803--32082158	94	3.8	91	76	11	307	28	17	27	25	1.98
32081800--32082059	47	5.5	46	73	15	162	29	19	28	23	1.98
32087513--32087573	20	3.0	20	82	0	68	39	21	6	32	1.79
32087742--32087787	24	1.9	24	86	0	65	39	21	19	19	1.93
32091379--32091501	43	2.9	42	80	8	124	28	13	26	32	1.93
32093186--32093288	30	3.5	29	83	8	129	15	23	28	33	1.95
32093209--32093262	17	3.4	17	68	19	53	18	22	25	33	1.97
32093516--32093550	17	2.1	17	100	0	70	34	28	0	37	1.58
32094108--32094193	43	2.0	43	86	0	118	25	22	2	50	1.61
32095590--32095623	16	2.0	17	88	11	52	50	14	0	35	1.44
32096926--32097021	42	2.3	43	80	5	106	29	16	23	30	1.96
32108251--32108288	19	2.0	19	85	10	51	18	2	2	76	1.02
32114128--32114171	22	2.0	22	100	0	88	27	0	18	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32121438--32121482	18	2.5	18	100	0	90	13	35	31	20	1.91
32129960--32130069	42	2.6	43	84	5	145	24	25	20	30	1.99
32130040--32130310	48	5.6	48	77	3	222	25	25	19	29	1.98
32130136--32130321	49	3.8	49	81	4	189	24	27	19	29	1.98
32130039--32130321	96	2.9	98	77	5	270	25	25	19	29	1.98
32139764--32139877	58	2.0	58	82	5	142	30	23	14	30	1.95
32148760--32149049	48	6.0	48	75	11	243	27	21	27	24	1.99
32148760--32149049	96	3.0	98	85	4	372	27	21	27	24	1.99
32158698--32158838	24	6.0	24	89	9	211	28	21	19	29	1.98
32158698--32158838	47	3.0	48	89	9	218	28	21	19	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295