genome.fa.s2.2.7.7.80.10.50.1000.276.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  276  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94203878--94203925	25	2.0	24	84	12	62	29	0	8	62	1.24
94204292--94204377	41	2.1	41	100	0	172	39	6	11	41	1.68
94204293--94204358	21	3.2	21	61	26	50	43	7	10	37	1.68
94205971--94206005	11	3.3	11	88	4	54	5	17	11	65	1.43
94205971--94206013	22	2.0	22	82	13	54	4	20	9	65	1.40
94216014--94216229	40	5.5	40	90	3	296	25	28	23	22	1.99
94216014--94216229	79	2.7	79	87	5	294	25	28	23	22	1.99
94218788--94218813	11	2.4	11	100	0	52	42	7	7	42	1.62
94222655--94222731	31	2.5	32	77	10	88	40	1	3	54	1.27
94224863--94225078	46	4.7	46	91	2	310	38	15	24	21	1.92
94224814--94225078	137	2.0	130	86	6	370	37	15	24	21	1.93
94224866--94225078	91	2.3	92	88	2	304	38	15	24	20	1.92
94227747--94227772	2	13.0	2	100	0	52	50	0	0	50	1.00
94232562--94232623	20	3.1	20	65	9	54	35	22	24	17	1.95
94235582--94235803	46	4.9	45	80	8	209	24	29	18	27	1.98
94235590--94235802	94	2.3	92	80	10	231	24	29	18	27	1.98
94235726--94235815	46	1.9	48	81	4	112	27	30	18	23	1.98
94240374--94240697	165	2.0	165	95	0	585	25	25	22	25	2.00
94243461--94243656	55	3.6	53	75	8	144	36	15	24	22	1.94
94243468--94243668	108	1.8	110	82	4	264	36	15	24	23	1.94
94243908--94243938	16	1.9	16	93	0	53	41	0	22	35	1.54
94247106--94247160	27	2.0	27	89	0	83	10	45	12	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94249095--94249132	17	2.2	18	85	4	51	39	2	2	55	1.28
94250198--94250247	12	3.9	12	82	10	55	10	14	70	6	1.33
94251545--94251580	3	12.0	3	100	0	72	66	0	0	33	0.92
94251841--94251882	7	5.6	8	78	16	54	78	0	0	21	0.75
94251849--94251883	16	2.2	16	90	10	54	80	0	0	20	0.72
94251842--94251890	15	3.3	15	85	8	64	75	2	0	22	0.90
94252015--94252065	19	2.7	20	82	11	63	64	3	0	31	1.11
94256481--94256510	12	2.5	12	88	0	51	6	23	40	30	1.80
94257391--94257517	35	3.6	35	81	1	128	40	32	12	14	1.84
94266237--94266266	15	2.0	15	93	0	51	30	0	0	70	0.88
94268005--94268061	28	2.0	29	93	6	98	31	7	5	56	1.49
94268318--94268346	5	5.8	5	100	0	58	0	17	0	82	0.66
94273006--94273105	10	10.4	10	69	14	50	63	2	4	31	1.24
94273385--94273471	9	9.4	9	70	17	54	35	1	0	63	1.02
94273385--94273473	19	4.8	18	70	18	67	37	1	0	61	1.03
94273482--94273650	86	2.0	87	85	2	234	30	9	21	38	1.85
94273839--94273897	31	1.9	31	89	0	91	32	20	3	44	1.68
94274081--94274132	18	2.8	17	75	13	50	65	3	3	26	1.27
94274119--94274181	30	2.2	29	81	13	69	58	7	3	30	1.42
94276069--94276157	44	2.0	44	97	0	169	24	24	19	31	1.98
94276741--94277122	127	3.0	127	100	0	764	33	14	17	34	1.91
94291072--94291177	54	2.1	48	80	16	133	35	16	23	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94291080--94291284	53	3.9	53	81	6	227	33	17	24	24	1.96
94299532--94299574	13	2.9	16	76	20	56	9	16	11	62	1.53
94299515--94299574	29	2.1	29	96	0	111	13	16	10	60	1.59
94303838--94304087	131	1.9	131	85	3	351	26	17	20	36	1.94
94304816--94304938	42	2.9	42	82	9	142	32	26	18	22	1.97
94304816--94304985	43	4.0	42	79	9	155	33	26	17	22	1.96
94304816--94304985	86	2.0	85	81	7	202	33	26	17	22	1.96
94307639--94307734	32	3.0	32	78	1	102	32	9	20	37	1.85
94315321--94315471	43	3.5	44	80	4	164	26	15	24	33	1.95
94317799--94317853	19	2.8	20	72	27	55	34	0	1	63	1.05
94317753--94317869	36	3.3	36	80	10	111	35	0	4	59	1.17
94317806--94317897	22	3.9	23	72	14	53	32	1	2	64	1.13
94317778--94317855	16	4.6	16	75	19	68	37	0	2	60	1.11
94317806--94317862	16	3.5	16	80	2	69	35	0	0	64	0.93
94317825--94317885	25	2.5	25	80	17	74	31	0	3	65	1.09
94318471--94318496	2	13.0	2	100	0	52	50	0	0	50	1.00
94321550--94321597	8	6.4	8	79	13	57	56	0	0	43	0.99
94321550--94321596	21	2.2	21	84	0	67	55	0	0	44	0.99
94326940--94326967	13	2.2	13	100	0	56	7	7	17	67	1.37
94331730--94332046	93	3.4	92	91	2	501	29	26	18	24	1.98
94331991--94332195	56	4.0	56	70	22	205	30	27	17	24	1.97
94331893--94332195	149	2.0	149	92	1	511	30	26	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94332046--94332236	93	2.1	93	92	0	328	31	27	17	22	1.97
94335132--94335176	22	2.0	24	86	8	67	46	2	8	42	1.47
94337887--94337965	33	2.4	34	79	12	83	6	8	18	65	1.41
94342367--94342405	20	2.0	19	85	5	51	17	10	7	64	1.48
94346079--94346148	35	2.0	35	91	0	113	37	12	24	25	1.91
94353127--94353247	39	3.1	39	97	0	224	13	27	22	37	1.91
94358904--94358933	14	2.1	14	93	0	51	83	3	0	13	0.77
94360447--94360478	5	6.6	5	92	7	57	81	0	0	18	0.70
94360448--94360478	9	3.3	9	95	4	53	80	0	0	19	0.71
94368394--94368535	42	3.3	43	79	11	139	23	16	26	32	1.96
94368382--94368551	43	4.0	43	76	11	152	23	17	27	32	1.96
94384657--94384882	117	1.9	117	89	0	353	37	13	9	39	1.78
94385263--94385318	26	2.1	27	86	6	78	35	0	5	58	1.21
94385789--94385820	16	2.0	16	93	0	55	65	0	34	0	0.93
94388248--94388318	30	2.4	30	92	0	115	35	11	33	19	1.88
94397002--94397048	17	2.8	17	81	9	60	42	40	0	17	1.49
94398252--94398302	24	2.1	25	89	10	79	27	3	7	60	1.42
94398272--94398307	19	1.9	18	94	5	63	22	2	11	63	1.39
94404028--94404063	18	1.9	18	88	5	54	63	0	2	33	1.08
94409474--94409507	15	2.3	15	90	5	52	23	0	2	73	0.97
94409515--94409567	9	6.0	9	76	10	56	20	5	0	73	1.03
94409515--94409561	10	5.1	10	78	17	57	21	6	0	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94409521--94409560	17	2.3	18	91	4	64	20	7	0	72	1.08
94409397--94409594	100	2.0	103	87	5	296	19	7	2	71	1.20
94409470--94409602	27	5.1	26	70	18	73	22	4	1	71	1.12
94409773--94409809	17	2.1	18	90	5	58	29	0	0	70	0.88
94410671--94410752	19	4.7	17	72	11	51	59	0	0	40	0.97
94410774--94410840	19	3.4	19	79	20	68	53	0	0	46	1.00
94410776--94410840	21	3.2	20	85	10	87	52	0	0	47	1.00
94410802--94410826	13	1.9	13	100	0	50	60	0	0	40	0.97
94410791--94410849	20	2.8	21	85	12	77	59	0	0	40	0.97
94413101--94413138	15	2.6	14	91	4	58	10	0	34	55	1.34
94413129--94413178	21	2.4	21	96	0	91	32	0	20	48	1.50
94413223--94413328	34	3.2	33	79	10	126	37	0	15	47	1.45
94413395--94413876	126	3.9	125	82	5	496	38	14	16	30	1.88
94417425--94417459	18	1.9	18	94	0	61	42	0	25	31	1.55
94418045--94418069	7	3.6	7	100	0	50	60	12	0	28	1.32
94419220--94419252	12	2.8	12	95	0	57	45	0	27	27	1.54
94426086--94426173	42	2.1	42	82	0	104	25	21	7	45	1.79
94427007--94427032	12	2.2	12	100	0	52	34	15	34	15	1.89
94427242--94427290	24	2.0	24	88	0	71	30	8	20	40	1.81
94433976--94434101	43	3.0	43	80	12	152	50	17	19	12	1.77
94434006--94434101	43	2.3	42	92	1	156	56	16	16	10	1.67
94437593--94437826	55	4.4	53	79	10	241	36	17	23	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94437600--94437800	108	1.8	110	87	4	300	34	17	23	23	1.96
94437916--94437960	23	1.9	24	90	4	74	42	11	24	22	1.86
94451710--94451765	25	2.3	23	74	11	58	42	17	23	16	1.88
94462787--94462986	39	5.2	39	85	0	240	34	30	20	14	1.92
94462787--94462986	78	2.6	78	86	0	267	34	30	20	14	1.92
94466789--94466830	21	2.0	21	100	0	84	52	23	9	14	1.71
94467294--94467334	17	2.6	16	88	11	66	65	4	2	26	1.25
94468110--94468142	17	1.9	18	88	11	52	42	15	0	42	1.46
94476565--94476615	15	3.0	17	76	15	52	74	3	1	19	1.07
94479110--94479154	20	2.3	20	92	3	74	77	8	8	4	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295