genome.fa.s2.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  177  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60714812--60714882	15	4.8	14	79	10	70	57	15	14	12	1.65
60714798--60714882	30	2.8	29	78	7	80	57	15	14	12	1.65
60716663--60716691	14	2.1	14	100	0	58	31	13	34	20	1.92
60733335--60733586	68	3.8	64	75	8	179	30	15	28	25	1.96
60737802--60737973	67	2.6	66	81	7	170	31	16	29	22	1.96
60737826--60738009	67	2.8	64	78	8	203	28	16	30	23	1.96
60742067--60742227	38	4.3	38	92	0	243	19	21	26	32	1.97
60742031--60742207	76	2.3	77	85	4	234	22	22	24	30	1.99
60743609--60743652	22	2.0	22	81	0	52	40	22	2	34	1.67
60752572--60752601	13	2.2	14	94	5	53	3	16	0	80	0.85
60761776--60761849	37	2.0	37	100	0	148	18	21	24	35	1.96
60764017--60764106	27	3.2	28	81	7	112	18	24	24	32	1.97
60764027--60764117	27	3.2	28	81	4	94	20	26	20	31	1.98
60765057--60765142	38	2.3	38	87	0	118	18	19	26	34	1.95
60765135--60765259	45	2.8	45	86	2	180	20	23	28	28	1.98
60765135--60765303	45	3.8	45	80	7	177	22	23	28	26	1.99
60770277--60770360	43	2.0	43	95	0	150	28	23	16	30	1.96
60770320--60770463	57	2.5	56	78	14	143	26	24	17	31	1.97
60770702--60770769	20	3.6	20	90	7	99	32	14	7	45	1.73
60770979--60771029	21	2.5	21	78	15	61	41	17	1	39	1.61
60772428--60773101	27	24.9	27	73	9	221	36	20	9	33	1.84
60772428--60773115	54	12.7	54	70	9	256	37	20	9	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60772592--60772959	81	4.5	81	73	7	244	34	20	8	35	1.84
60773943--60773993	20	2.5	20	96	0	93	41	11	17	29	1.85
60774043--60774204	26	6.3	26	85	2	215	27	20	22	28	1.99
60774337--60774428	42	2.2	42	88	0	130	30	15	20	33	1.93
60793658--60793930	40	6.8	40	92	1	433	21	22	28	26	1.99
60801843--60802048	40	5.2	40	90	0	331	20	20	29	28	1.98
60813099--60813293	39	5.0	39	87	1	257	32	28	20	17	1.96
60816397--60816428	16	2.0	16	100	0	64	62	0	6	31	1.20
60816404--60816442	21	1.9	20	89	5	60	64	0	2	33	1.08
60816493--60816526	17	1.9	18	88	5	52	38	5	5	50	1.51
60821442--60821617	46	3.8	45	79	10	203	21	19	29	28	1.98
60821439--60821609	93	1.8	93	94	0	306	21	20	29	28	1.98
60824565--60824620	15	3.7	15	88	7	87	12	16	10	60	1.58
60827334--60827366	14	2.2	16	89	10	52	27	6	18	48	1.71
60830873--60830915	21	2.0	22	81	4	52	39	2	2	55	1.25
60841970--60842003	17	1.9	18	88	5	52	50	5	5	38	1.51
60842597--60842646	25	2.0	25	84	0	64	34	4	4	58	1.36
60845533--60845606	29	2.6	29	86	4	96	25	31	16	27	1.96
60853538--60853610	28	2.6	29	86	2	94	26	30	16	27	1.97
60862338--60862398	30	2.0	30	83	0	77	31	22	8	37	1.84
60863438--60863492	25	2.3	23	84	12	67	60	18	1	20	1.46
60865785--60865832	16	3.1	17	80	19	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60865785--60865825	7	5.2	8	83	11	50	46	0	0	53	1.00
60867330--60867354	12	2.1	12	100	0	50	16	8	16	60	1.58
60868048--60868268	46	4.7	47	76	10	184	25	22	29	22	1.99
60874803--60874827	12	2.1	12	100	0	50	16	8	16	60	1.58
60875535--60875671	46	3.0	45	81	10	152	28	21	29	20	1.98
60875675--60875805	50	2.6	50	83	0	172	33	19	24	22	1.97
60891700--60891753	27	2.0	27	85	0	72	38	7	14	38	1.75
60892012--60892232	49	4.5	49	77	8	241	25	19	26	27	1.99
60895369--60895429	30	2.1	29	87	3	86	14	13	13	59	1.63
60895369--60895419	15	3.4	15	76	10	59	13	15	11	58	1.63
60901084--60901137	27	2.0	27	85	0	72	38	7	14	38	1.75
60901388--60901628	49	4.8	50	77	7	231	24	18	26	30	1.98
60909747--60909812	33	2.0	33	84	0	87	25	19	22	31	1.98
60914860--60914911	27	2.0	26	84	3	68	34	21	26	17	1.95
60929032--60929098	32	2.1	32	86	5	91	43	5	23	26	1.77
60929032--60929089	16	3.6	16	90	4	82	44	5	24	25	1.74
60929254--60929342	26	3.3	25	73	15	88	52	1	1	44	1.15
60932703--60932796	48	2.0	48	97	0	179	30	18	22	28	1.97
60942149--60942306	27	5.9	27	87	2	210	39	22	8	29	1.84
60943060--60943111	27	2.0	26	84	3	68	17	26	21	34	1.95
60943129--60943190	33	1.9	32	83	3	79	20	19	20	38	1.93
60947588--60947664	30	2.6	29	78	15	84	57	16	12	12	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60947597--60947668	15	4.9	15	81	3	83	58	16	12	12	1.63
60949751--60949786	18	2.1	18	89	5	56	19	47	16	16	1.83
60956164--60956227	24	2.7	24	95	0	110	25	31	17	26	1.97
60962951--60963039	24	3.7	24	86	7	110	24	31	15	28	1.96
60980318--60980582	45	5.9	45	93	0	424	27	28	22	21	1.99
60980575--60980660	38	2.3	38	89	0	127	31	24	22	22	1.98
60982987--60983020	17	2.0	17	94	0	59	23	23	2	50	1.63
61001596--61001645	21	2.5	20	84	12	59	12	40	30	18	1.86
61004243--61004278	18	2.0	18	100	0	72	44	22	0	33	1.53
61007424--61007457	17	1.9	17	88	5	50	20	44	26	8	1.81
61010108--61010146	17	2.3	17	100	0	78	15	35	0	48	1.45
61013241--61013403	43	3.9	41	77	9	159	30	24	14	30	1.95
61016087--61016534	46	9.5	46	75	13	239	27	18	29	24	1.98
61016171--61016538	48	7.8	46	75	11	209	27	18	30	23	1.98
61016087--61016538	94	4.8	96	74	13	277	27	18	29	24	1.98
61016316--61016538	49	4.6	49	77	8	172	26	17	30	25	1.97
61022743--61022888	40	3.7	40	87	7	233	22	23	28	25	2.00
61022736--61022889	80	1.9	80	98	0	299	23	22	28	25	1.99
61028371--61028451	38	2.1	38	88	0	117	24	23	25	25	2.00
61028467--61028613	43	3.4	43	96	0	267	10	26	31	30	1.90
61028535--61028683	70	2.1	70	88	0	226	12	24	30	32	1.92
61028605--61028691	43	2.0	43	84	0	111	16	24	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61028492--61028704	113	1.9	113	89	0	327	13	23	32	30	1.93
61034264--61034297	17	2.0	17	100	0	68	29	5	23	41	1.78
61034700--61034808	37	2.9	37	95	0	191	26	31	19	22	1.98
61034954--61035138	48	3.8	48	87	4	264	30	25	6	37	1.81
61034954--61035137	98	1.9	98	88	4	284	30	25	6	37	1.81
61035108--61035301	47	4.1	47	85	0	253	27	29	10	31	1.91
61040297--61040389	40	2.3	40	88	1	134	23	23	27	24	2.00
61041717--61041775	16	3.7	16	83	0	82	52	20	18	8	1.71
61041884--61041919	18	1.9	19	88	5	56	25	19	38	16	1.92
61042000--61042080	29	2.8	29	92	0	117	25	18	30	24	1.98
61042985--61043018	17	2.0	17	100	0	68	35	5	29	29	1.81
61048131--61048186	26	2.2	26	100	0	112	57	7	12	23	1.60
61056977--61057065	3	29.7	3	97	0	169	0	31	0	68	0.90
61061590--61061649	29	2.0	29	81	9	68	26	15	8	50	1.72
61061681--61061950	134	2.0	133	98	0	522	34	15	9	41	1.79
61063498--61064413	459	2.0	459	100	0	1832	42	15	17	24	1.88
61065597--61065669	38	1.9	37	86	2	101	30	13	23	32	1.93
61065953--61066003	26	2.0	26	92	0	84	37	11	25	25	1.90
61069951--61070003	26	2.0	26	85	0	70	39	22	13	24	1.90
61070431--61070499	34	2.0	34	91	0	111	39	28	5	26	1.79
61079277--61079326	20	2.5	20	80	0	55	36	24	10	30	1.88
61086994--61087046	27	2.0	27	81	7	63	45	0	30	24	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61087449--61087482	17	1.9	18	88	5	52	32	0	0	67	0.91
61092088--61092200	43	2.7	42	78	5	129	32	30	15	21	1.95
61094915--61094960	19	2.4	20	82	17	62	45	30	10	13	1.77
61102779--61102888	36	3.0	37	82	4	132	27	16	15	40	1.88
61120311--61121178	452	1.9	452	99	0	1718	31	22	10	35	1.88
61121710--61121763	22	2.5	22	93	0	90	27	55	3	12	1.54
61126625--61126740	47	2.5	47	97	0	214	30	26	18	24	1.98
61129541--61129565	11	2.3	11	100	0	50	72	0	0	28	0.86
61129681--61129715	16	2.2	16	94	0	61	11	25	8	54	1.64
61129847--61129890	24	1.9	23	86	9	63	31	22	2	43	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295