genome.fa.s2.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  141  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47926362--47926454	44	2.1	44	97	0	177	15	29	22	33	1.94
47926999--47927040	22	1.9	22	95	0	75	26	2	14	57	1.50
47930122--47930165	21	2.1	21	100	0	88	40	18	4	36	1.71
47930650--47930814	50	3.3	49	75	10	172	30	25	16	26	1.97
47930650--47930865	51	4.3	51	77	6	190	33	26	14	25	1.95
47930737--47930865	50	2.5	50	83	5	143	34	27	11	26	1.91
47933820--47933867	24	2.0	24	91	0	78	14	22	39	22	1.91
47936701--47936858	68	2.3	68	77	13	153	20	27	15	35	1.94
47947350--47947519	92	1.8	94	82	12	226	28	18	30	23	1.98
47947303--47947663	49	7.6	47	73	15	218	28	18	28	24	1.98
47951231--47951263	9	3.8	9	88	8	50	60	0	0	39	0.97
47951219--47951287	30	2.3	31	84	2	95	55	4	2	37	1.35
47958937--47959086	53	2.8	53	81	9	169	46	14	7	32	1.72
47960441--47960491	16	3.2	16	83	10	77	35	7	29	27	1.85
47960650--47960700	26	2.0	26	88	3	77	45	0	3	50	1.20
47960663--47960797	58	2.3	57	84	2	162	51	3	0	44	1.24
47965735--47966044	46	6.6	46	74	13	231	27	17	29	25	1.98
47965735--47965996	140	1.9	140	83	6	343	28	17	29	24	1.97
47972405--47972600	46	4.2	46	78	10	150	27	16	30	25	1.96
47991766--47991814	25	2.0	25	95	0	89	12	24	32	30	1.92
47991864--47991912	25	2.0	25	95	0	89	10	26	32	30	1.89
47991688--47992046	100	3.6	100	91	4	548	19	20	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47991963--47992014	26	2.0	26	96	0	95	13	23	34	28	1.92
47999412--47999463	25	2.1	25	86	13	72	13	23	32	30	1.93
47999512--47999561	26	1.9	26	95	0	91	12	26	32	30	1.92
47999338--47999697	102	3.6	102	84	9	461	19	20	28	31	1.97
47999612--47999663	27	1.9	27	96	0	95	13	25	32	28	1.93
48004376--48004499	47	2.7	46	79	7	133	26	27	18	27	1.98
48008578--48008918	170	2.0	170	97	0	637	36	20	12	30	1.90
48013470--48013554	43	2.0	43	95	0	152	30	17	21	30	1.96
48021719--48021922	42	4.8	42	80	3	178	30	15	24	29	1.95
48021719--48021922	84	2.4	84	81	4	232	30	15	24	29	1.95
48037389--48037413	11	2.3	11	100	0	50	40	8	16	36	1.77
48050386--48050414	10	2.9	10	100	0	58	51	10	0	37	1.36
48052836--48052885	25	2.0	25	96	0	91	44	2	8	46	1.44
48058512--48058560	24	2.0	24	100	0	98	30	20	4	44	1.70
48073897--48074077	40	4.6	40	81	7	201	24	20	27	26	1.99
48073946--48074110	79	2.1	79	82	6	192	26	20	27	26	1.99
48078673--48078847	13	13.5	13	73	9	124	36	17	3	43	1.66
48078673--48078770	25	3.8	26	77	11	78	37	15	2	44	1.58
48078935--48078965	12	2.6	12	94	0	53	38	6	19	35	1.77
48083107--48083211	28	3.8	27	87	5	131	36	8	24	30	1.86
48085197--48085410	29	7.4	29	72	6	175	17	17	35	28	1.93
48085167--48085410	57	4.2	57	93	1	380	18	17	35	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48085226--48085380	28	5.5	28	69	9	125	17	20	34	28	1.95
48090339--48090416	27	2.8	27	82	3	93	34	8	25	30	1.87
48090339--48090408	27	2.6	27	88	2	95	31	8	28	31	1.87
48106496--48106525	15	1.9	16	93	6	53	50	20	10	20	1.76
48108187--48108265	27	3.0	27	81	1	88	35	27	11	25	1.90
48108496--48108585	7	12.3	7	75	9	72	20	1	31	47	1.57
48108495--48108550	16	3.7	15	83	9	60	23	1	26	48	1.61
48110539--48110629	45	2.0	45	89	4	139	28	28	12	30	1.92
48120497--48120617	43	2.8	43	80	7	120	26	18	24	30	1.98
48122409--48122441	16	2.0	17	88	5	50	36	0	12	51	1.39
48125524--48125583	14	4.3	13	77	12	57	51	6	0	41	1.28
48125523--48125577	28	2.0	28	92	7	94	52	7	0	40	1.29
48126890--48126940	25	2.0	25	100	0	102	41	7	11	39	1.71
48130079--48130135	9	5.9	9	73	15	51	35	8	21	35	1.84
48130077--48130139	20	3.2	20	95	0	117	36	12	19	31	1.89
48130192--48130345	24	6.4	24	93	2	238	29	23	20	25	1.99
48130194--48130338	47	3.1	47	92	1	236	29	23	20	26	1.98
48130553--48130616	31	2.1	31	87	0	92	37	15	21	25	1.93
48134832--48134861	12	2.4	13	94	5	53	20	16	6	56	1.62
48144250--48144299	21	2.4	20	80	9	55	46	0	34	20	1.51
48151793--48151850	25	2.3	25	85	11	75	63	1	12	22	1.37
48158795--48159000	40	5.2	40	92	0	315	29	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48184864--48185026	40	4.1	39	89	5	238	25	27	23	23	2.00
48189741--48189790	14	3.5	14	74	15	57	28	22	0	50	1.49
48189735--48189790	29	1.9	29	100	0	112	32	19	0	48	1.49
48196208--48196415	114	1.8	114	81	8	262	41	16	13	28	1.86
48197324--48197371	25	2.0	25	83	4	62	8	6	25	60	1.49
48211415--48211491	38	2.0	38	100	0	154	31	24	5	38	1.77
48215847--48215888	22	1.9	22	100	0	84	52	4	0	42	1.22
48216235--48216311	10	7.4	10	73	17	59	32	5	1	61	1.26
48216226--48216313	42	2.1	42	83	8	108	32	6	1	59	1.31
48216373--48216426	20	2.6	21	75	16	58	27	12	0	59	1.34
48223881--48223914	2	17.0	2	100	0	68	50	0	50	0	1.00
48225097--48225143	24	1.9	25	82	4	60	40	4	4	51	1.41
48235869--48235982	57	2.0	57	98	0	219	32	21	7	38	1.82
48238985--48239024	16	2.6	15	84	7	53	62	0	0	37	0.95
48240737--48240782	4	12.0	4	82	17	62	76	0	23	0	0.79
48240692--48240782	19	4.6	20	78	15	66	74	4	18	2	1.09
48241119--48241156	20	1.9	20	88	0	58	57	0	10	31	1.32
48242007--48242062	16	3.6	16	76	11	62	33	1	25	39	1.66
48252936--48252987	27	1.9	27	92	0	86	51	11	0	36	1.38
48252959--48253139	43	4.0	43	83	12	245	48	16	0	35	1.47
48253023--48253139	9	13.4	9	75	10	84	47	17	0	34	1.48
48252979--48253093	52	2.2	52	93	0	194	48	17	0	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48252959--48253136	95	1.9	95	93	0	311	47	16	0	35	1.47
48256716--48256773	29	2.0	29	100	0	116	41	3	13	41	1.62
48258009--48258124	39	3.0	39	94	0	205	25	16	27	30	1.97
48258009--48258175	78	2.1	78	82	4	203	24	17	26	30	1.97
48262884--48262977	47	2.0	47	95	0	170	20	5	24	50	1.69
48263085--48263241	43	3.7	42	78	9	176	31	19	21	27	1.97
48267883--48268044	3	54.0	3	70	15	77	31	3	3	61	1.29
48267892--48267978	17	5.3	17	68	15	51	31	4	2	62	1.28
48267888--48267927	14	2.8	14	92	3	62	32	0	0	67	0.91
48273330--48273372	15	2.9	14	89	6	59	83	11	2	2	0.83
48273332--48273372	21	2.0	21	85	9	57	82	12	2	2	0.86
48275293--48275502	45	4.7	45	71	13	155	26	19	22	30	1.98
48275113--48275509	133	3.0	133	92	0	659	28	19	21	31	1.97
48275381--48275985	176	3.4	176	91	0	969	27	18	22	30	1.98
48275868--48275962	43	2.2	44	83	5	122	27	17	23	31	1.97
48276031--48276442	84	4.9	84	88	3	596	37	23	21	17	1.94
48276090--48276224	44	3.2	44	66	16	129	36	28	20	14	1.92
48276090--48276398	40	7.3	44	63	20	131	36	23	22	17	1.94
48276814--48276852	17	2.3	17	95	0	69	28	51	0	20	1.48
48277218--48277375	3	53.0	3	73	14	78	29	4	3	62	1.30
48277232--48277271	14	2.8	14	92	3	62	32	0	0	67	0.91
48277226--48277372	20	7.3	20	67	16	74	29	4	2	62	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48277519--48277570	17	2.9	17	81	18	61	30	1	0	67	1.02
48279143--48279298	43	3.6	42	79	6	154	32	23	14	28	1.94
48280949--48281326	196	1.9	196	85	3	519	32	14	9	43	1.78
48287816--48287859	10	4.2	10	80	8	52	75	2	0	22	0.92
48287809--48287861	22	2.3	23	80	3	63	71	1	0	26	0.96
48287864--48287898	10	3.6	10	92	3	54	42	8	2	45	1.49
48291185--48291362	27	6.6	27	84	3	205	29	28	15	26	1.96
48291206--48291361	82	1.9	81	88	3	233	29	28	15	26	1.96
48292506--48292592	43	2.0	43	100	0	174	36	27	4	31	1.77
48297058--48297332	136	2.0	138	90	5	443	46	5	7	40	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295