genome.fa.s2.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  152  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51757870--51758079	27	7.7	27	80	6	192	42	20	14	22	1.88
51757870--51758079	54	3.9	54	79	6	219	42	20	14	22	1.88
51757883--51758079	81	2.4	81	85	2	252	44	19	14	21	1.86
51758473--51758567	34	2.8	34	86	0	127	28	21	25	25	1.99
51760737--51760840	43	2.6	41	77	15	110	29	16	25	27	1.97
51762652--51762827	46	3.8	46	79	12	216	20	21	29	28	1.98
51762649--51762820	93	1.8	93	96	0	317	20	21	29	27	1.98
51767675--51767726	21	2.5	21	96	0	95	50	3	17	28	1.64
51769774--51769949	46	3.8	46	79	14	209	20	20	29	29	1.98
51769771--51769942	93	1.8	93	95	2	310	20	20	29	28	1.98
51777698--51777816	43	2.8	42	82	5	141	29	12	25	32	1.92
51788024--51788208	40	4.7	40	80	7	200	24	22	28	25	1.99
51788077--51788241	79	2.1	79	82	6	192	26	20	27	25	1.99
51795094--51795493	47	8.5	47	92	1	629	32	8	30	28	1.87
51795094--51795493	143	2.8	141	91	1	638	32	8	30	28	1.87
51795612--51795690	37	2.1	37	86	4	106	25	17	30	26	1.97
51799277--51799321	23	1.9	24	86	4	65	73	2	17	6	1.15
51800546--51800727	40	4.6	40	80	8	203	24	22	27	25	2.00
51810650--51810698	24	2.0	24	100	0	98	36	16	20	26	1.93
51813828--51814031	40	5.2	40	88	4	281	26	27	21	24	1.99
51818238--51818316	39	2.0	39	90	0	122	35	11	21	31	1.89
51822488--51822690	40	5.1	40	87	4	270	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51827192--51827363	93	1.8	93	91	0	281	27	29	21	21	1.99
51827184--51827359	46	3.8	46	74	12	171	28	28	21	21	1.98
51827235--51827378	46	3.1	45	73	11	139	29	28	20	22	1.98
51828956--51829159	40	5.2	40	86	4	263	27	27	20	24	1.99
51833232--51833317	15	5.9	15	80	8	81	55	15	16	12	1.69
51833232--51833317	30	2.9	30	80	10	97	55	15	16	12	1.69
51836219--51836389	46	3.7	46	76	12	179	29	29	19	21	1.98
51846155--51846447	47	6.2	47	89	1	417	25	29	11	33	1.91
51846201--51846276	22	3.3	22	66	28	59	23	27	13	35	1.92
51846178--51846463	93	3.1	93	85	2	315	28	27	10	33	1.90
51853732--51853852	59	2.1	59	100	0	242	40	20	13	25	1.89
51863382--51863557	47	3.7	47	94	1	300	33	7	29	28	1.86
51863676--51863752	37	2.1	37	90	0	118	23	18	32	25	1.97
51865702--51865810	57	1.9	58	86	1	157	26	30	16	26	1.97
51865706--51865813	29	3.8	29	80	6	121	26	29	16	26	1.97
51866045--51866083	8	4.9	8	83	0	51	7	20	25	46	1.77
51866053--51866087	16	2.2	16	94	0	61	5	20	22	51	1.68
51866042--51866088	24	2.0	23	91	4	76	6	19	25	48	1.72
51869874--51869927	27	2.0	27	92	0	90	22	1	42	33	1.64
51872964--51873037	29	2.6	29	86	0	94	31	27	12	29	1.92
51872964--51873046	29	2.9	29	75	7	78	32	27	12	27	1.92
51874914--51875027	40	2.8	41	81	15	112	28	27	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51874998--51875130	45	3.0	45	83	4	160	34	25	14	25	1.94
51880985--51881095	45	2.5	45	79	5	127	27	15	27	29	1.96
51887341--51887466	47	2.7	47	86	0	171	23	14	27	34	1.93
51890601--51890847	41	6.0	41	85	3	291	36	23	19	20	1.95
51895480--51895510	16	2.0	15	93	6	53	83	3	6	6	0.88
51907490--51907521	15	2.1	16	94	5	57	56	6	6	31	1.49
51920694--51920773	37	2.2	37	83	0	97	30	27	16	26	1.97
51920892--51921144	47	5.3	47	90	1	389	28	30	9	32	1.88
51928062--51928183	50	2.4	50	81	8	133	26	29	19	24	1.99
51928004--51928181	49	3.6	50	77	9	181	25	29	19	24	1.98
51928106--51928236	50	2.8	48	78	11	137	24	29	17	28	1.97
51928106--51928270	46	3.5	47	76	11	126	24	29	18	28	1.98
51929899--51929996	29	3.4	29	77	4	92	26	27	19	26	1.99
51930212--51930262	16	3.2	16	86	8	61	13	17	15	52	1.74
51937571--51937685	29	4.0	28	80	8	124	27	27	17	26	1.98
51942851--51942952	41	2.5	41	79	9	109	31	24	11	32	1.91
51950396--51950507	27	4.1	27	82	10	131	37	22	24	16	1.93
51950396--51950507	54	2.1	54	86	3	154	37	22	24	16	1.93
51958269--51958373	27	3.9	28	81	9	128	37	20	24	17	1.94
51967126--51967165	19	2.1	19	90	0	62	30	15	2	52	1.55
51967587--51967689	40	2.6	40	82	0	125	35	24	12	27	1.91
51974827--51975011	79	2.3	80	79	7	198	24	28	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51974808--51975011	40	5.1	40	78	8	202	24	27	22	25	1.99
51982839--51983023	79	2.3	82	83	7	229	24	27	22	24	2.00
51982820--51983023	40	5.1	40	81	8	229	24	27	22	25	2.00
51985328--51985383	28	2.0	28	96	0	103	23	14	26	35	1.93
52006985--52007064	34	2.4	34	85	4	108	26	26	26	21	1.99
52008120--52008155	18	2.0	18	94	0	63	50	19	5	25	1.69
52008291--52008477	39	4.7	40	85	6	222	33	26	18	21	1.96
52008418--52008583	39	4.2	39	89	2	226	30	28	19	21	1.97
52012665--52012886	40	5.6	40	86	2	288	23	19	26	30	1.98
52018714--52018749	18	2.0	18	100	0	72	50	16	5	27	1.68
52018880--52019079	39	5.1	40	88	3	246	30	26	21	21	1.98
52019047--52019138	39	2.4	39	92	0	148	31	26	19	22	1.98
52024992--52025162	93	1.8	93	94	0	306	28	28	21	21	1.98
52024987--52025159	46	3.7	46	77	13	201	29	27	20	21	1.98
52025581--52025640	30	2.0	30	90	0	93	35	25	3	36	1.72
52032276--52032370	40	2.4	40	92	0	154	22	18	28	30	1.97
52034505--52034595	45	2.0	45	97	0	173	23	17	29	29	1.97
52036676--52036847	93	1.8	93	89	0	272	28	30	20	20	1.98
52036668--52036843	46	3.8	45	79	7	183	29	29	19	21	1.98
52040934--52041038	27	3.9	27	81	12	117	17	21	22	38	1.93
52040933--52041040	54	2.0	54	85	3	146	17	21	22	38	1.93
52045718--52045800	43	1.9	43	90	0	130	21	19	31	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52045762--52045861	51	2.0	51	86	4	139	23	18	26	33	1.97
52049156--52049387	49	4.7	49	81	3	284	29	26	18	25	1.98
52055202--52055431	49	4.6	50	79	7	238	30	23	18	26	1.98
52055202--52055433	100	2.3	99	81	5	263	30	24	18	26	1.98
52057603--52057660	23	2.4	25	80	8	66	41	17	18	22	1.90
52057623--52057675	25	2.2	24	83	10	63	37	24	20	16	1.93
52061379--52061444	13	5.1	13	78	7	80	28	7	25	37	1.83
52061371--52061444	26	2.9	26	80	9	89	28	8	25	37	1.84
52069173--52069222	25	2.0	25	84	7	66	38	32	2	28	1.68
52075842--52075952	47	2.4	47	98	0	213	31	10	29	27	1.91
52077954--52078056	43	2.4	43	100	0	206	22	15	35	26	1.94
52078038--52078111	29	2.6	29	89	4	105	25	16	32	25	1.96
52078422--52078617	40	4.9	40	81	5	184	26	22	27	24	2.00
52078422--52078618	80	2.5	81	82	5	222	25	22	26	24	2.00
52082028--52082104	25	3.2	25	60	14	63	29	5	31	33	1.80
52082011--52082387	47	8.1	47	94	1	625	31	9	30	28	1.88
52087109--52087320	40	5.3	40	84	6	261	23	22	27	26	2.00
52087520--52087581	31	2.0	31	100	0	124	41	3	22	32	1.70
52087579--52087620	22	1.9	22	85	9	59	30	9	14	45	1.77
52090486--52090702	47	4.6	49	78	10	197	24	29	17	28	1.98
52094463--52094541	25	3.3	25	65	22	69	35	10	25	29	1.88
52094437--52094562	47	2.7	47	94	0	216	36	11	26	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52094445--52094516	22	3.1	22	64	24	58	33	13	29	23	1.93
52094532--52094670	48	2.8	48	86	6	181	35	6	25	32	1.82
52094817--52094888	37	1.9	37	94	0	126	22	19	30	27	1.98
52100692--52100912	40	5.6	40	82	7	256	26	27	22	23	2.00
52100692--52100912	80	2.8	80	85	5	288	26	27	22	23	2.00
52109709--52109915	47	4.4	47	83	7	219	23	28	19	28	1.98
52109709--52109915	93	2.2	94	81	8	244	23	28	19	28	1.98
52112553--52112585	16	2.1	16	100	0	66	51	30	0	18	1.46
52114395--52114441	24	2.0	23	87	4	67	46	12	17	23	1.82
52120818--52120896	25	3.3	25	61	10	65	32	5	29	32	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295