Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  14  of  295  ( 35319 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4275594--4275756
35
4.7
35
79
6
170
47
10
12
30
1.74
4275933--4275979
20
2.5
19
77
16
53
44
8
17
29
1.78
4276143--4276193
17
3.0
16
77
11
57
72
1
0
25
0.95
4276323--4276380
8
7.6
8
79
9
50
0
17
0
82
0.66
4276328--4276357
11
2.6
12
89
10
53
0
23
0
76
0.78
4276320--4276376
9
6.1
10
80
15
61
0
19
0
80
0.71
4276320--4276376
19
3.1
19
82
2
80
0
19
0
80
0.71
4276636--4276704
17
3.9
18
76
16
56
0
27
0
72
0.85
4276637--4276708
3
24.0
3
78
16
62
0
29
0
70
0.87
4276656--4276705
17
2.9
17
78
18
59
0
34
0
66
0.92
4276662--4276707
14
3.1
14
80
17
56
0
32
0
67
0.91
4276751--4276796
20
2.3
20
96
0
83
13
50
30
6
1.66
4277098--4277214
30
3.9
29
79
7
101
44
2
22
30
1.66
4277113--4277214
30
3.4
30
83
2
125
44
2
22
30
1.68
4277210--4277238
14
2.0
15
93
6
51
17
0
0
82
0.66
4279557--4279629
21
3.5
21
82
0
92
47
8
21
21
1.76
4282310--4282354
20
2.2
20
96
0
81
53
4
0
42
1.21
4282372--4282418
19
2.5
19
76
10
51
72
4
2
21
1.12
4282823--4282908
39
2.2
39
100
0
172
18
33
15
32
1.92
4286652--4286681
14
2.1
14
93
0
51
13
3
40
43
1.60
4286710--4286743
13
2.6
13
85
0
50
29
0
35
35
1.58
4288105--4288145
21
1.9
22
90
5
66
17
0
36
46
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4288233--4288372
41
3.4
41
93
3
237
17
22
24
36
1.94
4288233--4288401
83
2.0
82
86
6
234
17
22
24
36
1.95
4290746--4290808
30
2.1
30
93
0
108
28
3
12
55
1.52
4290932--4290965
11
2.9
12
86
8
52
64
0
0
35
0.94
4293703--4293741
12
3.1
12
82
13
51
58
0
0
41
0.98
4293710--4293740
14
2.2
14
94
0
53
64
0
0
35
0.94
4296435--4296499
33
2.0
33
93
0
112
41
3
20
35
1.68
4300370--4300403
6
5.7
6
89
0
50
35
35
0
29
1.58
4301719--4301934
114
1.9
114
100
0
432
51
10
4
33
1.57
4301939--4301971
3
11.0
3
100
0
66
33
0
0
66
0.92
4309160--4309217
17
3.6
16
81
6
73
41
44
1
12
1.51
4310300--4310344
15
3.0
15
78
12
56
28
2
6
62
1.33
4310440--4310521
39
2.1
40
86
6
114
29
7
3
59
1.41
4310536--4310623
32
2.7
31
84
11
99
25
9
1
64
1.29
4310447--4310703
3
85.7
3
69
6
99
29
8
2
59
1.40
4311002--4311425
128
3.3
128
90
1
624
25
15
18
40
1.90
4316557--4316636
25
3.2
26
94
5
146
36
25
7
31
1.84
4321948--4322140
104
1.8
103
89
9
302
31
29
19
19
1.96
4321948--4322173
106
2.2
104
88
7
334
32
30
18
18
1.95
4322506--4322564
29
2.0
29
86
0
82
33
22
6
37
1.80
4324110--4324142
17
1.9
17
93
0
57
18
33
12
36
1.88
4327684--4328289
68
9.0
68
87
2
805
26
24
21
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4327684--4328286
202
3.0
202
87
2
802
26
24
21
27
1.99
4328662--4328719
17
3.6
16
86
6
82
41
46
1
10
1.48
4329807--4330107
3
101.0
3
71
7
139
30
7
2
59
1.37
4330407--4330834
128
3.3
128
90
0
642
26
15
17
40
1.89
4333848--4334048
46
4.3
46
81
3
233
40
18
19
20
1.91
4334009--4334075
20
3.3
20
70
0
62
38
19
17
23
1.93
4338119--4338157
15
2.7
14
80
4
51
58
0
0
41
0.98
4345153--4345182
14
2.1
14
93
0
51
30
10
0
60
1.30
4358555--4358718
46
3.6
46
86
6
224
21
23
12
43
1.86
4358545--4358721
92
1.9
92
90
0
282
21
23
12
42
1.87
4364519--4364604
20
4.1
20
75
17
77
40
0
1
58
1.06
4364525--4364616
20
4.3
20
75
15
69
38
2
2
57
1.23
4365975--4366001
14
1.9
14
100
0
54
29
25
22
22
1.99
4372566--4372595
4
7.5
4
100
0
60
46
0
0
53
1.00
4374689--4374721
17
1.9
17
88
11
50
18
9
0
72
1.10
4379061--4379097
19
1.9
19
88
0
56
51
2
0
45
1.15
4379176--4379236
20
3.2
19
77
11
63
52
1
0
45
1.10
4379276--4379318
22
2.0
22
86
4
61
46
0
0
53
1.00
4379793--4379866
15
4.6
15
74
19
60
48
1
2
47
1.24
4388548--4388589
22
2.0
22
85
4
59
26
4
11
57
1.54
4388548--4388595
22
2.2
22
81
7
53
29
4
10
56
1.52
4389846--4389892
23
2.0
23
95
0
85
25
10
31
31
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4390255--4390295
19
2.2
19
86
0
55
60
0
2
36
1.10
4391958--4392053
47
2.0
47
86
4
131
53
12
8
26
1.66
4395631--4395672
20
2.1
20
90
0
66
45
0
0
54
0.99
4395639--4395679
14
2.7
15
88
7
57
46
0
0
53
1.00
4396764--4396799
17
2.2
17
90
5
56
58
2
5
33
1.36
4398753--4398893
73
1.9
73
86
0
201
26
17
24
31
1.97
4398891--4399056
74
2.2
74
85
9
230
28
14
18
37
1.90
4405739--4405782
21
2.1
21
95
0
79
45
0
54
0
0.99
4405736--4405784
24
2.0
24
100
0
98
46
0
53
0
1.00
4405745--4405784
3
13.3
3
94
0
53
42
0
57
0
0.98
4407015--4407067
14
3.5
14
76
18
61
28
5
0
66
1.15
4407007--4407073
32
2.1
32
97
0
125
25
8
1
64
1.31
4407219--4407269
25
2.2
23
86
10
68
39
0
0
60
0.97
4407736--4407795
21
2.9
21
69
14
52
46
3
0
50
1.18
4410940--4410980
21
2.0
21
90
0
64
19
29
21
29
1.98
4426512--4426540
14
2.0
15
93
6
51
20
6
17
55
1.65
4426662--4426755
40
2.2
41
81
12
111
36
13
20
29
1.91
4426746--4426898
31
5.0
31
87
4
211
26
19
27
26
1.99
4426923--4427087
47
3.7
46
84
6
169
28
15
26
29
1.96
4427017--4427131
42
2.7
43
89
4
171
30
14
26
27
1.95
4428140--4428225
31
2.8
32
71
18
83
53
16
6
23
1.67
4428789--4428972
94
2.0
94
96
0
341
29
20
13
36
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4446840--4446872
13
2.5
13
95
0
57
78
3
15
3
0.99
4448663--4448802
69
2.0
69
95
0
253
41
15
15
27
1.88
4448979--4449092
56
2.0
56
100
0
228
35
14
27
22
1.93
4452875--4452937
31
2.0
32
84
9
85
46
0
6
47
1.28
4453309--4453380
37
1.9
37
84
15
96
43
1
15
40
1.55
4453310--4453390
37
2.2
37
79
16
87
45
1
16
37
1.55
4457614--4457654
21
2.0
21
90
0
64
29
21
29
19
1.98
4463499--4463539
11
3.7
11
80
0
55
19
14
9
56
1.66
4463576--4463638
30
2.1
30
87
0
90
26
1
9
61
1.36
4463763--4463796
11
3.0
12
87
12
54
67
0
0
32
0.91
4464135--4464216
43
1.9
43
87
5
121
29
17
12
41
1.85
4470072--4470158
43
2.0
43
90
0
138
33
17
9
40
1.81
4474760--4474794
17
2.1
17
100
0
70
34
25
11
28
1.91
4479033--4479065
16
2.1
16
88
11
50
27
0
6
66
1.15
4491203--4491233
11
2.7
12
95
5
55
9
12
0
77
0.99
4492349--4492410
16
3.9
16
75
8
65
75
0
3
20
0.94
4492443--4492494
22
2.5
20
82
11
68
73
1
0
25
0.94
4492622--4492678
30
1.9
30
85
0
78
14
36
29
19
1.91
4495342--4495553
46
4.9
39
81
14
183
37
16
23
22
1.93
4495381--4495587
46
4.5
46
90
1
290
40
14
23
21
1.90
4495332--4495587
138
1.9
130
84
7
334
39
14
23
22
1.91
4495858--4495904
25
2.0
25
83
8
62
53
4
14
27
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4506136--4506168
6
5.7
6
89
3
50
0
9
0
90
0.44
4506139--4506175
12
2.9
13
88
8
58
0
13
0
86
0.57
4506136--4506175
18
2.1
19
90
9
64
0
12
0
87
0.54
4508008--4508066
30
2.0
31
90
6
95
50
10
10
28
1.68
4509331--4509468
31
4.5
31
77
11
142
44
10
18
26
1.82
4509276--4509468
91
2.1
90
82
0
233
43
13
19
23
1.87
4518320--4518365
20
2.2
21
77
11
51
60
6
4
28
1.40
4520659--4520756
49
2.0
49
100
0
196
28
22
16
32
1.95
4521748--4521821
31
2.4
31
84
11
89
56
0
2
40
1.13
4524195--4524231
13
2.8
13
91
4
56
83
2
2
10
0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295