genome.fa.s2.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  124  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42525750--42525945	7	29.1	7	66	25	86	36	2	1	59	1.21
42525743--42525813	26	2.8	25	75	14	74	38	0	0	61	0.96
42525752--42525813	16	3.8	16	85	10	72	40	0	0	59	0.97
42525743--42525967	19	12.0	19	66	23	56	35	2	1	60	1.22
42525830--42525942	40	2.9	41	83	10	114	35	2	1	60	1.21
42525959--42525992	14	2.5	14	85	4	52	32	11	0	55	1.36
42526013--42526085	24	3.0	24	93	2	119	35	2	0	61	1.10
42526291--42526339	26	1.9	25	83	4	62	36	4	0	59	1.17
42530067--42530116	14	3.5	15	80	20	54	24	22	10	44	1.83
42538117--42538885	210	3.7	209	89	2	1086	30	19	21	28	1.97
42540431--42540494	18	3.8	16	82	16	58	39	0	0	60	0.97
42540422--42540615	30	6.8	30	72	18	105	35	2	1	60	1.20
42540448--42540659	19	11.2	19	67	22	92	33	3	1	60	1.24
42540511--42540624	40	2.9	41	84	8	114	35	2	1	60	1.21
42540425--42540649	56	4.2	53	70	20	152	35	2	1	60	1.21
42540447--42540629	3	60.3	3	68	25	84	34	2	1	60	1.21
42540641--42540674	14	2.5	14	85	4	52	32	11	0	55	1.36
42540694--42540743	24	2.0	25	88	3	75	34	2	0	64	1.05
42540948--42540996	26	1.9	25	83	4	62	36	4	0	59	1.17
42542763--42542797	18	1.9	18	88	0	52	60	20	0	20	1.37
42543615--42543675	29	2.1	29	87	0	86	26	29	24	19	1.99
42549462--42549496	18	1.9	18	88	0	52	60	20	0	20	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42554852--42554891	13	3.0	13	85	3	53	15	17	7	60	1.57
42554970--42555014	24	1.9	23	86	13	65	62	0	0	37	0.96
42554990--42555038	20	2.2	21	82	13	55	57	2	2	38	1.22
42555316--42555358	9	5.1	8	82	5	50	30	0	2	67	1.03
42555496--42555598	30	3.3	30	64	20	77	46	9	8	34	1.68
42555525--42555632	34	3.3	34	63	19	84	50	7	5	37	1.54
42555497--42555641	64	2.3	64	98	0	281	49	8	7	33	1.62
42567841--42568135	26	11.7	26	71	13	136	62	4	5	28	1.36
42567968--42568007	20	2.0	20	85	0	53	72	0	0	27	0.85
42567973--42568076	23	4.2	24	75	10	86	67	3	3	25	1.25
42573491--42573589	52	1.9	52	91	0	162	29	28	21	21	1.98
42580641--42580799	84	1.9	84	80	7	189	49	9	8	33	1.65
42580640--42581050	87	4.8	90	74	14	289	44	10	11	33	1.75
42580853--42581061	85	2.4	86	81	9	221	41	10	11	37	1.75
42582748--42582914	46	3.6	46	94	2	273	31	28	20	19	1.97
42587192--42587254	31	2.0	31	93	0	108	42	15	7	33	1.76
42589557--42589582	12	2.2	12	100	0	52	50	0	19	30	1.48
42590472--42590506	16	2.2	16	90	10	54	40	8	25	25	1.84
42590485--42590576	46	2.0	44	84	12	116	31	5	23	39	1.78
42591348--42591428	40	2.0	40	100	0	162	43	27	4	24	1.75
42595984--42596043	22	2.6	24	80	14	74	75	1	8	15	1.12
42610860--42610908	22	2.2	22	85	0	62	14	32	14	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42613985--42614034	20	2.5	19	81	9	55	26	10	14	50	1.73
42618594--42618756	51	3.1	51	63	14	125	20	20	25	33	1.97
42618591--42618797	105	2.0	105	91	1	335	22	21	26	29	1.99
42620150--42620242	39	2.5	37	80	7	98	27	29	22	20	1.98
42620598--42620645	3	16.0	3	82	0	60	58	6	0	35	1.23
42620599--42620647	18	2.7	18	93	0	80	55	8	0	36	1.30
42620598--42620645	12	4.0	12	91	0	69	58	6	0	35	1.23
42621351--42621390	20	2.0	20	85	9	55	2	15	5	77	1.04
42621521--42621588	31	2.3	28	78	9	73	41	2	1	54	1.24
42621567--42621605	21	1.9	20	84	5	51	46	2	0	51	1.14
42622960--42623178	46	4.7	46	78	7	183	23	22	26	27	1.99
42634181--42634235	27	2.0	27	83	13	69	52	1	1	43	1.22
42638968--42639012	20	2.2	20	88	0	63	35	13	2	48	1.54
42645552--42645623	30	2.4	30	97	0	135	19	25	33	22	1.97
42648500--42648693	43	4.5	43	85	4	248	23	19	28	28	1.98
42648506--42648701	86	2.3	86	88	5	299	24	18	28	29	1.98
42649271--42649303	16	1.9	18	88	11	52	18	12	18	51	1.76
42652110--42652154	20	2.2	20	88	0	63	35	13	2	48	1.54
42656011--42656083	35	2.1	36	86	2	103	23	20	15	41	1.90
42660865--42660907	13	3.3	13	83	9	52	72	0	11	16	1.13
42660861--42660907	17	2.7	18	86	6	69	72	0	10	17	1.12
42660873--42660907	9	4.0	9	88	7	54	71	0	11	17	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42660950--42660980	4	7.5	4	92	7	53	70	0	29	0	0.87
42662282--42662328	5	9.2	5	92	2	67	38	0	23	38	1.55
42662737--42662976	45	5.3	45	89	0	309	20	18	19	41	1.91
42663156--42663346	18	10.6	18	73	14	135	34	12	15	37	1.85
42663156--42663426	36	7.3	36	69	15	149	35	12	14	36	1.85
42670072--42670099	8	3.5	8	100	0	56	64	0	0	35	0.94
42673687--42673783	25	3.9	25	93	0	149	36	19	25	18	1.95
42677276--42677389	49	2.3	48	81	10	133	21	25	21	31	1.98
42680735--42680898	43	3.8	43	76	13	149	25	17	26	29	1.98
42684866--42684898	11	2.8	12	90	4	50	78	6	3	12	1.04
42689829--42689883	28	2.0	28	100	0	110	43	14	0	41	1.45
42699472--42699593	43	2.9	42	76	9	140	27	22	18	31	1.97
42704980--42705525	138	4.0	135	75	4	466	22	18	20	38	1.94
42704980--42705548	207	2.7	208	78	3	504	23	18	19	38	1.94
42704980--42705530	69	8.0	69	73	5	342	22	18	20	38	1.94
42712517--42712557	11	3.9	10	84	9	55	60	0	12	26	1.31
42714046--42714071	2	13.0	2	100	0	52	0	0	50	50	1.00
42724749--42724816	16	4.2	16	83	9	77	41	4	23	30	1.74
42725036--42725092	26	2.2	25	81	6	60	47	3	0	49	1.18
42725011--42725122	58	1.9	58	81	9	136	50	4	0	44	1.22
42725128--42725170	21	2.0	21	86	9	59	62	2	0	34	1.08
42745221--42745268	18	2.7	18	75	12	53	68	0	12	18	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42747389--42747486	42	2.3	42	87	0	151	21	24	34	19	1.96
42766219--42766271	20	2.9	18	79	20	65	50	3	1	43	1.30
42771039--42771083	23	1.9	24	90	4	74	22	20	11	46	1.81
42780165--42780217	28	2.0	27	92	7	90	30	24	9	35	1.87
42786519--42786667	40	3.6	40	75	4	111	24	29	18	26	1.98
42786573--42786680	43	2.6	42	82	5	103	23	30	20	25	1.98
42786600--42786680	43	1.9	42	87	2	117	22	32	20	24	1.98
42786850--42786918	28	2.5	28	87	0	93	28	27	11	31	1.92
42788049--42788093	21	2.1	21	95	0	81	33	24	13	28	1.93
42798281--42798305	12	2.1	12	100	0	50	28	24	8	40	1.83
42803139--42803279	41	3.4	41	72	13	119	23	21	26	28	1.99
42808351--42808430	23	3.5	22	80	14	90	38	18	23	18	1.93
42808366--42808489	23	5.3	24	79	6	130	40	18	20	20	1.92
42808366--42808479	47	2.4	47	82	4	133	41	18	20	20	1.91
42814811--42814860	19	2.6	19	87	6	66	52	8	0	40	1.31
42821030--42821072	20	2.2	20	86	0	59	48	0	4	46	1.22
42825232--42825272	21	2.0	21	95	0	73	53	12	12	21	1.70
42836091--42836161	35	2.0	35	97	0	133	38	28	7	26	1.82
42842702--42842736	16	2.2	16	89	0	52	31	5	25	37	1.80
42843781--42843836	24	2.3	25	81	9	62	42	5	5	46	1.49
42843768--42843836	25	2.9	24	78	6	61	42	4	5	47	1.47
42849686--42849730	24	2.0	22	83	16	56	66	6	13	13	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42852736--42852770	18	1.9	18	88	0	52	14	5	5	74	1.19
42861562--42861660	42	2.3	43	83	10	123	29	25	21	24	1.99
42865437--42865573	49	2.8	49	78	3	141	24	32	19	24	1.98
42868130--42868290	54	3.0	54	90	1	252	31	13	26	28	1.94
42870626--42870657	14	2.1	16	88	11	50	46	12	12	28	1.78
42871263--42871292	13	2.3	13	94	0	51	30	0	0	70	0.88
42874712--42874740	15	2.0	15	93	6	51	68	0	0	31	0.89
42875143--42875167	12	2.1	12	100	0	50	84	0	0	16	0.63
42876168--42876243	37	2.1	37	83	14	95	43	23	7	25	1.80
42881924--42882029	55	1.9	55	82	0	131	20	29	25	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295