genome.fa.s2.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  118  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40630387--40630465	29	2.8	28	81	12	81	25	5	3	65	1.30
40639989--40640038	21	2.4	21	80	16	59	28	2	6	64	1.28
40641517--40641650	41	3.3	41	82	2	180	18	28	16	36	1.93
40641573--40641642	20	3.5	20	71	11	70	14	31	18	35	1.91
40641562--40641619	21	2.9	20	75	14	66	18	31	17	32	1.94
40643239--40643735	47	10.6	47	95	0	841	28	29	8	33	1.87
40646537--40646595	30	2.0	30	96	0	109	20	28	33	16	1.95
40646545--40646612	30	2.3	30	81	0	82	29	27	25	17	1.97
40648814--40649024	40	5.3	39	82	6	255	27	27	20	23	1.99
40648814--40649024	80	2.7	80	90	1	336	27	27	20	23	1.99
40651493--40651699	53	3.8	53	75	3	189	19	23	17	39	1.92
40658980--40659186	53	3.8	55	76	1	159	19	24	17	38	1.93
40658992--40659186	55	3.6	53	75	2	165	18	24	18	38	1.93
40661179--40661285	32	3.3	32	83	6	126	40	6	8	44	1.61
40662200--40662246	17	2.8	16	79	17	51	57	14	8	19	1.63
40665488--40665524	18	2.2	18	85	9	51	40	0	2	56	1.13
40666657--40666690	17	1.9	18	88	5	52	14	0	5	79	0.91
40666634--40666681	18	2.7	18	75	12	55	22	2	2	72	1.05
40667856--40667898	22	2.0	22	86	9	61	62	0	2	34	1.08
40668094--40668166	29	2.6	28	82	4	92	39	10	0	49	1.38
40668095--40668155	29	2.1	29	90	0	95	42	8	0	49	1.32
40669380--40669416	17	2.2	17	95	0	65	29	0	18	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40672917--40672974	23	2.6	22	81	5	71	34	17	20	27	1.95
40674448--40674542	39	2.5	37	74	6	84	33	22	16	27	1.95
40675395--40675437	17	2.4	18	88	7	70	0	27	0	72	0.85
40675395--40675434	12	3.4	12	86	6	55	0	27	0	72	0.85
40675508--40675542	5	7.0	5	86	0	52	62	0	2	34	1.10
40675559--40675596	19	2.1	17	90	9	58	34	7	0	57	1.28
40681294--40681334	23	1.9	21	85	14	57	53	0	21	24	1.46
40681665--40681712	15	3.3	15	82	2	62	37	2	12	47	1.53
40682018--40682075	23	2.5	23	97	0	107	8	3	41	46	1.51
40682180--40682220	19	2.2	19	87	12	59	46	0	24	29	1.53
40684906--40684940	14	2.5	14	95	0	61	22	20	31	25	1.98
40692758--40692814	21	2.8	20	74	7	62	57	8	1	31	1.39
40693366--40693421	18	3.1	18	75	10	51	62	3	1	32	1.23
40693325--40693443	22	5.4	22	68	14	68	60	5	3	30	1.37
40693385--40693455	28	2.3	31	83	11	85	60	7	2	29	1.37
40693423--40693482	24	2.5	25	76	13	63	58	8	5	28	1.48
40693555--40693580	3	8.7	3	100	0	52	65	0	0	34	0.93
40709876--40709908	16	2.0	17	88	5	50	30	0	27	42	1.56
40711203--40711244	20	2.1	20	95	0	75	23	19	35	21	1.96
40716651--40716701	21	2.4	21	83	6	59	39	0	17	43	1.49
40716982--40717177	105	1.9	105	82	6	254	19	25	21	32	1.97
40717172--40717240	34	2.0	34	100	0	138	17	17	18	46	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40717230--40717311	25	3.3	25	81	10	96	20	25	18	35	1.95
40717288--40717370	24	3.4	24	77	1	76	20	27	19	32	1.97
40718576--40718609	13	2.6	13	95	0	59	20	38	26	14	1.91
40721060--40721130	25	2.8	25	82	6	81	47	22	15	14	1.81
40721118--40721168	20	2.5	20	93	0	84	47	23	19	9	1.79
40721295--40721368	37	2.0	37	97	0	139	31	24	12	32	1.92
40725574--40725627	20	2.8	18	83	8	63	77	7	1	12	1.05
40725574--40725628	24	2.2	26	83	6	69	76	7	1	14	1.08
40731017--40731059	15	2.8	16	82	10	54	53	16	18	11	1.72
40731018--40731077	30	2.0	30	84	12	79	53	16	16	13	1.73
40731019--40731074	15	3.7	15	73	13	53	51	17	17	12	1.75
40733699--40733794	48	2.0	48	100	0	192	33	18	12	35	1.89
40737127--40737174	11	4.6	10	80	16	53	70	2	4	22	1.15
40737121--40737190	22	3.2	22	82	11	81	68	4	4	22	1.25
40737264--40737387	52	2.3	53	80	13	139	70	7	4	17	1.26
40747450--40747706	80	3.2	80	92	3	396	24	22	27	24	2.00
40747446--40747673	40	5.7	40	93	3	397	24	22	27	25	2.00
40747446--40747706	119	2.2	119	91	4	411	25	22	27	24	2.00
40755575--40755803	40	5.7	40	95	0	413	24	22	27	25	2.00
40758530--40758630	23	4.4	23	75	13	91	27	20	17	33	1.96
40760248--40760442	101	1.9	101	87	6	288	28	23	17	30	1.97
40762302--40762381	33	2.4	34	85	4	108	45	12	7	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40769400--40769454	22	2.5	22	88	5	76	43	18	0	38	1.50
40769425--40769469	19	2.5	17	76	13	54	33	17	2	46	1.61
40774527--40774571	23	2.0	23	91	4	74	46	17	4	31	1.68
40774553--40774602	19	2.8	17	82	11	64	36	18	10	36	1.84
40774524--40774581	22	2.6	22	86	7	82	43	18	3	34	1.68
40774537--40774594	19	2.8	20	84	10	64	39	17	6	36	1.76
40775852--40775919	31	2.2	31	86	5	93	36	7	8	47	1.63
40779493--40779549	21	2.7	21	77	17	55	24	31	31	12	1.92
40781635--40781806	46	3.7	46	78	14	210	21	21	27	29	1.99
40781632--40781801	92	1.8	93	94	1	306	21	21	28	28	1.99
40787168--40787433	46	5.8	45	75	15	256	21	19	28	29	1.98
40787165--40787428	93	2.8	93	95	0	465	21	19	29	29	1.98
40791159--40791189	13	2.5	13	94	5	55	51	0	16	32	1.44
40793841--40793909	30	2.3	30	100	0	138	17	23	34	24	1.96
40798102--40798133	16	2.0	16	93	0	55	46	37	6	9	1.61
40799366--40799401	16	2.2	16	95	0	63	55	22	13	8	1.65
40799613--40799724	29	3.9	29	76	1	118	26	14	32	26	1.95
40799605--40799717	58	2.0	57	85	1	154	29	13	30	26	1.94
40802117--40802154	19	2.0	19	100	0	76	36	21	21	21	1.95
40807727--40807857	55	2.4	55	84	0	172	23	34	22	19	1.97
40810778--40810816	13	3.0	13	96	0	69	48	15	0	35	1.45
40823474--40823540	30	2.3	27	82	17	73	59	1	1	37	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40839925--40840102	27	6.6	27	74	6	119	28	16	26	29	1.97
40839922--40840102	82	2.2	81	81	4	204	28	16	25	29	1.97
40843595--40843646	21	2.4	22	87	6	79	30	44	0	25	1.54
40843837--40843889	24	2.2	24	90	6	81	64	0	0	35	0.94
40843851--40843894	12	3.8	12	84	3	63	68	0	0	31	0.90
40843945--40844024	22	3.6	22	75	18	69	36	40	0	23	1.55
40844016--40844056	14	2.9	15	82	10	59	39	31	0	29	1.57
40843998--40844072	22	3.5	22	73	8	66	40	32	0	28	1.57
40844289--40844404	41	2.8	41	87	5	164	27	31	20	20	1.98
40844440--40844518	39	2.0	39	87	7	115	25	18	16	39	1.91
40844440--40844577	40	3.5	40	72	9	120	22	19	18	39	1.93
40845850--40845876	2	13.5	2	100	0	54	0	51	0	48	1.00
40847024--40847053	2	15.0	2	100	0	60	50	0	50	0	1.00
40848665--40848700	18	2.0	18	94	0	63	52	0	38	8	1.32
40854133--40854185	16	3.3	15	75	12	52	56	1	24	16	1.50
40860221--40860260	20	2.0	20	85	5	53	40	2	7	50	1.44
40860447--40860491	22	2.1	21	84	15	58	62	4	0	33	1.15
40863357--40863668	163	1.9	163	90	1	500	35	13	15	35	1.87
40864608--40864632	13	1.9	13	100	0	50	0	16	0	84	0.63
40867167--40867262	45	2.1	46	84	11	126	42	7	4	45	1.51
40868077--40868126	25	2.0	25	100	0	100	28	16	28	28	1.97
40868612--40868658	3	15.7	3	100	0	94	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40872978--40873010	13	2.5	13	100	0	66	6	33	33	27	1.81
40874285--40874329	16	2.9	15	80	6	63	15	11	11	62	1.55
40876370--40876418	15	3.2	15	82	5	62	16	12	16	55	1.70
40877833--40877883	24	2.1	25	81	3	59	50	5	5	37	1.51
40878017--40878045	9	3.3	9	95	4	51	68	0	31	0	0.89
40879255--40879337	18	4.6	18	90	0	121	32	10	16	39	1.84
40879336--40879380	20	2.4	19	82	10	56	42	4	15	37	1.67
40879317--40879371	28	2.0	28	85	0	74	40	7	14	38	1.74
40885661--40885728	30	2.3	29	84	2	91	8	19	17	54	1.68
40900593--40900898	114	2.7	114	93	2	512	37	14	9	38	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295