genome.fa.s2.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  154  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52525916--52525965	20	2.5	20	78	12	57	10	12	2	76	1.11
52525916--52525964	19	2.5	20	86	6	64	10	12	2	75	1.13
52530390--52530496	37	2.9	37	94	1	180	25	29	19	25	1.98
52530709--52531102	47	8.0	47	84	5	428	26	29	12	31	1.93
52530836--52531081	53	4.8	52	87	6	360	27	28	13	31	1.93
52530709--52531082	153	2.5	150	89	5	577	26	28	12	31	1.93
52536872--52536969	27	3.5	28	87	2	126	27	13	28	30	1.94
52536900--52536982	27	3.0	27	85	5	105	31	12	25	31	1.92
52538555--52538946	40	9.8	40	90	0	613	26	26	21	25	1.99
52540215--52540285	37	1.9	37	91	0	115	25	29	19	25	1.99
52540496--52540900	47	8.0	47	77	12	342	26	29	12	31	1.92
52540623--52540879	64	4.8	52	79	15	283	27	28	12	31	1.93
52540523--52540849	164	2.0	157	90	5	512	26	28	12	32	1.92
52540688--52540900	98	2.2	99	94	1	374	27	29	12	30	1.93
52555208--52555334	68	1.9	68	83	9	170	22	28	15	33	1.95
52556089--52556208	6	19.3	6	69	19	68	49	14	16	20	1.80
52556098--52556208	31	3.5	31	90	1	150	49	13	17	19	1.79
52556345--52556446	27	3.8	26	78	10	98	37	19	22	20	1.95
52556605--52556669	22	3.0	22	80	8	78	33	23	23	20	1.97
52557096--52557533	27	16.3	27	90	1	655	24	20	21	33	1.97
52557583--52557660	27	2.9	27	88	3	113	32	11	19	37	1.87
52557573--52557930	81	4.4	81	85	2	290	31	10	20	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52557637--52557939	27	11.2	27	89	0	426	32	9	19	38	1.84
52570431--52570674	27	9.1	26	88	4	317	41	20	17	19	1.90
52570664--52570824	27	6.0	27	78	5	166	26	14	19	39	1.91
52570431--52570673	107	2.3	108	89	0	344	41	20	17	19	1.90
52585043--52585143	43	2.3	43	87	0	139	31	27	20	19	1.97
52585917--52585945	13	2.1	14	93	6	51	55	10	0	34	1.34
52587019--52587095	32	2.5	31	77	12	77	46	22	18	12	1.82
52587225--52587339	27	4.3	26	85	5	140	36	22	23	17	1.95
52587225--52587339	54	2.1	54	87	3	160	36	22	23	17	1.95
52588947--52589082	26	5.2	26	97	0	236	36	24	5	33	1.78
52592989--52593103	27	4.3	26	87	5	149	36	23	23	16	1.94
52592989--52593103	54	2.1	54	88	3	169	36	23	23	16	1.94
52594708--52594842	26	5.2	26	97	0	227	36	24	5	34	1.78
52598766--52598880	27	4.3	26	84	5	131	35	22	24	17	1.95
52598765--52598880	54	2.1	54	82	3	153	35	22	25	17	1.95
52600489--52600624	26	5.2	26	94	1	229	36	23	5	34	1.77
52603062--52603132	35	2.0	35	94	0	124	42	5	22	29	1.76
52605643--52605782	9	15.6	9	74	10	108	34	0	20	45	1.56
52605603--52605783	56	3.3	54	80	11	199	34	1	18	45	1.57
52606318--52606378	32	1.9	31	83	9	79	57	4	6	31	1.46
52607026--52607055	15	2.0	15	93	0	51	50	13	23	13	1.77
52608356--52608387	15	2.1	16	94	5	57	40	0	28	31	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52611973--52612013	15	2.8	15	85	3	57	56	29	0	14	1.39
52612258--52612294	7	5.1	7	87	6	56	32	51	0	16	1.45
52612458--52612560	41	2.5	40	75	3	107	29	16	19	34	1.94
52612612--52612715	40	2.6	41	86	4	140	31	23	15	29	1.95
52612788--52612946	40	4.0	40	71	12	121	30	20	18	29	1.97
52612432--52612867	153	2.8	152	78	9	474	29	20	18	32	1.96
52613032--52613157	40	3.2	40	72	10	123	26	19	19	34	1.96
52612611--52613157	232	2.4	232	86	3	766	29	20	18	31	1.96
52622522--52622698	52	3.5	51	86	4	225	29	29	14	26	1.95
52625383--52625486	44	2.4	44	80	3	113	27	24	21	26	1.99
52631098--52631222	62	2.0	62	95	0	223	44	16	11	28	1.82
52632499--52632594	44	2.2	44	85	3	124	30	27	16	26	1.97
52637072--52637217	41	3.6	40	81	4	139	34	15	26	23	1.94
52640900--52640958	28	2.1	28	84	6	75	37	8	0	54	1.31
52644992--52645223	40	5.8	40	93	1	315	24	20	28	26	1.99
52647099--52647124	12	2.2	12	100	0	52	38	7	23	30	1.83
52647173--52647224	20	2.4	23	81	9	65	23	21	7	48	1.75
52647173--52647235	21	3.0	20	76	9	54	22	19	7	50	1.72
52647742--52647780	20	2.0	20	85	5	53	64	2	12	20	1.40
52647794--52647928	61	2.2	61	83	6	159	54	8	15	21	1.68
52647776--52647966	20	9.6	20	74	11	151	52	9	16	21	1.71
52647826--52647966	39	3.5	39	77	12	126	53	7	17	21	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52648035--52648114	20	4.0	19	77	8	79	55	5	18	21	1.62
52651081--52651115	18	1.9	18	94	0	61	71	5	5	17	1.25
52652356--52652429	23	3.3	22	83	12	80	29	2	0	67	1.04
52652456--52652562	48	2.3	47	77	4	117	31	3	2	61	1.28
52652477--52652587	32	3.5	33	80	10	110	27	4	4	63	1.34
52664601--52665120	44	11.9	44	78	6	357	30	17	25	26	1.97
52664587--52665121	85	6.2	85	80	9	433	30	17	25	26	1.97
52664729--52665123	174	2.3	176	80	8	477	30	17	25	25	1.98
52665076--52665279	80	2.6	79	79	6	216	29	17	26	25	1.98
52665404--52665438	18	1.9	18	94	0	61	71	5	5	17	1.25
52666692--52666759	22	3.2	22	84	10	79	27	2	0	69	1.03
52666791--52666895	13	7.6	14	69	25	64	31	3	2	61	1.28
52667065--52667103	21	1.9	21	84	5	53	28	7	2	61	1.37
52671856--52672004	76	2.0	75	85	4	201	47	9	12	30	1.73
52671979--52672392	137	3.0	136	90	2	627	41	8	5	44	1.58
52674243--52674360	44	2.7	44	81	5	148	31	24	18	25	1.98
52674825--52674883	23	2.6	23	97	0	109	30	32	22	15	1.94
52680527--52680742	40	5.5	40	85	7	266	25	27	22	25	2.00
52680540--52680742	78	2.6	79	85	4	266	25	27	22	25	2.00
52688379--52688597	79	2.8	80	85	4	273	24	28	22	24	1.99
52688379--52688597	40	5.5	40	85	6	275	24	28	22	24	1.99
52696206--52696352	75	2.0	74	93	1	249	45	8	15	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52696328--52696611	138	2.1	136	88	4	410	42	7	3	46	1.51
52702214--52702300	43	2.0	43	97	0	165	34	22	8	34	1.84
52703771--52703910	27	5.2	28	83	3	146	22	16	20	40	1.91
52708090--52708162	31	2.4	31	90	2	112	41	21	4	32	1.72
52709066--52709119	27	2.0	27	96	0	99	46	11	20	22	1.82
52709476--52709566	24	3.9	24	77	20	102	29	16	25	28	1.97
52709462--52709585	46	2.6	47	86	10	164	30	17	24	27	1.97
52715211--52715432	53	4.2	54	77	4	218	18	24	18	38	1.93
52722509--52722546	16	2.4	16	100	0	76	50	5	21	23	1.69
52722720--52722908	55	3.5	54	76	5	193	19	22	19	38	1.93
52727054--52727168	24	4.9	24	76	12	98	33	17	20	27	1.95
52728991--52729116	46	2.7	46	96	0	225	30	27	20	20	1.98
52736077--52736251	46	3.8	45	74	11	156	29	18	28	24	1.98
52736126--52736438	49	6.6	46	72	11	154	27	19	28	24	1.98
52736308--52736438	49	2.7	50	84	10	164	27	22	28	22	1.99
52745878--52746199	51	6.6	50	91	3	455	31	12	29	26	1.93
52746032--52746107	24	3.2	24	62	23	61	28	13	32	25	1.93
52746173--52746263	46	2.0	46	84	0	119	32	9	31	25	1.89
52746408--52746515	37	2.9	37	91	0	162	25	18	29	26	1.98
52751939--52752296	40	9.1	40	90	2	553	25	29	21	24	1.99
52751939--52752296	79	4.5	79	92	2	549	25	29	21	24	1.99
52752350--52752424	38	2.0	38	86	5	107	24	26	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52754882--52755003	22	5.3	22	62	21	61	25	29	11	33	1.91
52754854--52755198	47	7.3	47	92	3	491	27	30	9	32	1.89
52757570--52757839	94	2.9	94	94	0	459	33	11	27	27	1.91
52757624--52757746	22	5.3	22	62	21	63	33	13	28	25	1.93
52757561--52757839	47	5.9	47	90	0	414	33	11	27	27	1.91
52758044--52758193	37	4.1	37	90	3	230	24	19	30	26	1.98
52758200--52759805	803	2.0	803	95	0	2910	30	14	20	34	1.92
52760796--52760974	49	3.6	49	84	4	236	29	20	27	22	1.98
52766046--52766087	21	2.0	21	100	0	84	42	19	4	33	1.72
52770252--52770340	30	3.0	30	80	8	101	57	15	16	10	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295