genome.fa.s2.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  101  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32525864--32525968	42	2.5	43	84	4	133	28	16	24	30	1.96
32535437--32535494	30	1.9	31	85	3	82	29	12	31	27	1.92
32535829--32535999	96	1.8	92	85	7	236	26	18	29	25	1.98
32535921--32536095	49	3.6	48	83	9	178	26	17	29	26	1.98
32538805--32539027	46	4.7	47	79	11	192	29	18	29	22	1.97
32541722--32541756	13	2.6	13	86	4	52	74	0	11	14	1.08
32541783--32541827	19	2.4	19	82	10	58	71	0	28	0	0.87
32542435--32542464	3	10.0	3	92	0	51	30	0	3	66	1.07
32547718--32547752	13	2.6	13	86	4	52	74	0	11	14	1.08
32548993--32549027	18	1.9	18	88	0	52	37	14	17	31	1.89
32549000--32549059	18	3.3	18	78	0	66	45	11	13	30	1.79
32555038--32555258	46	4.8	44	73	12	149	23	29	19	27	1.98
32562413--32562596	40	4.6	40	81	2	226	24	26	23	26	2.00
32562413--32562596	79	2.3	81	84	5	241	24	26	23	26	2.00
32570391--32570600	40	5.3	40	80	11	211	25	26	21	26	2.00
32570429--32570600	79	2.2	79	82	9	208	25	26	22	25	2.00
32577611--32577833	40	5.8	40	90	6	336	26	27	21	24	1.99
32577611--32577833	119	1.9	114	88	8	333	26	27	21	24	1.99
32582339--32582508	46	3.7	45	80	7	189	25	30	17	27	1.97
32582392--32582508	47	2.5	46	83	6	137	26	30	15	27	1.96
32585359--32585583	47	4.8	46	78	12	192	28	18	30	22	1.97
32585360--32585533	93	1.9	94	83	8	230	28	18	30	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32585364--32585583	93	2.3	92	79	12	218	29	18	30	22	1.97
32600214--32600386	46	3.7	46	76	13	183	20	17	30	31	1.96
32600208--32600379	93	1.8	93	93	0	299	20	19	29	30	1.97
32610255--32610432	27	6.6	27	84	3	205	29	28	15	26	1.96
32610276--32610431	82	1.9	81	88	3	233	29	28	15	26	1.96
32624903--32625214	49	6.6	47	71	16	186	26	20	29	24	1.99
32628098--32628176	23	3.5	22	70	17	63	36	20	18	24	1.95
32633352--32633495	40	3.6	39	89	1	207	25	24	25	24	2.00
32633308--32633518	40	5.3	40	80	7	189	26	23	25	24	2.00
32633308--32633518	79	2.7	79	80	5	257	26	23	25	24	2.00
32641476--32641589	27	4.2	28	83	4	128	34	21	23	21	1.97
32641476--32641590	54	2.1	53	84	6	142	33	21	23	20	1.97
32645782--32645860	28	2.8	28	82	0	95	32	12	26	27	1.93
32652633--32652722	28	3.3	28	84	4	112	36	21	21	21	1.95
32654689--32654746	28	2.1	27	80	3	62	58	18	3	18	1.53
32658560--32658682	55	2.2	56	88	2	176	26	12	28	33	1.92
32658560--32658682	28	4.4	28	90	2	176	26	12	28	33	1.92
32658585--32658695	28	4.0	27	90	3	116	28	11	26	33	1.91
32666759--32666881	55	2.2	56	88	2	176	26	12	28	33	1.92
32666759--32666881	28	4.4	28	90	2	176	26	12	28	33	1.92
32666784--32666894	28	4.0	27	90	3	116	28	11	26	33	1.91
32674304--32674367	22	2.8	23	77	11	69	34	17	20	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32674297--32674401	46	2.3	46	79	12	119	34	17	20	27	1.95
32674302--32674411	23	4.8	23	71	13	77	32	17	22	27	1.96
32676137--32676165	3	9.7	3	100	0	58	34	0	34	31	1.58
32680975--32681284	109	2.9	108	84	2	401	32	18	18	30	1.95
32687433--32687475	6	7.5	6	84	10	54	30	4	0	65	1.13
32687440--32687492	5	10.0	5	88	8	52	32	7	0	60	1.25
32687438--32687475	11	3.4	11	82	17	51	34	2	0	63	1.09
32687433--32687475	17	2.5	17	92	0	68	30	4	0	65	1.13
32687596--32687670	18	4.4	17	80	11	82	26	5	1	66	1.21
32687596--32687666	36	2.0	35	88	2	106	26	5	1	66	1.22
32687671--32687697	14	1.9	14	100	0	54	44	3	0	51	1.19
32689702--32690115	110	3.7	109	86	6	557	29	19	18	32	1.96
32689710--32690111	220	1.8	221	89	4	639	30	19	18	32	1.95
32689930--32690135	53	3.7	53	65	10	124	30	19	17	32	1.95
32689730--32690118	55	6.9	58	65	20	177	29	19	18	33	1.95
32697908--32697946	15	2.6	15	95	0	69	17	46	12	23	1.83
32700563--32700657	40	2.4	40	80	3	102	20	25	17	36	1.94
32704833--32704911	37	2.1	37	90	0	122	25	31	18	24	1.98
32705030--32705770	47	15.4	47	90	3	1068	28	29	9	32	1.88
32711958--32712018	30	2.0	30	96	0	113	24	21	9	44	1.82
32713916--32713942	6	4.5	6	100	0	54	37	48	14	0	1.45
32716418--32716642	49	4.5	49	87	4	292	28	27	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32716418--32716649	99	2.3	98	85	5	297	27	27	18	25	1.98
32718423--32718486	30	2.1	30	97	0	119	54	18	7	18	1.67
32720300--32720453	42	3.7	41	78	11	150	29	16	25	28	1.96
32720300--32720455	84	1.9	83	85	4	215	29	16	25	28	1.96
32727832--32727995	42	3.9	39	74	13	141	30	14	24	31	1.94
32728772--32728825	20	2.7	20	91	0	90	12	25	37	24	1.91
32737729--32737776	20	2.5	20	78	18	57	29	18	25	27	1.98
32741911--32741990	39	2.3	34	80	18	92	30	12	12	45	1.79
32741920--32741997	39	2.0	39	97	0	147	32	12	14	41	1.83
32748442--32748572	46	2.8	46	83	0	172	21	22	25	30	1.99
32751849--32751892	12	3.5	13	82	14	56	22	2	0	75	0.92
32754685--32754724	10	3.9	10	80	6	53	70	5	0	25	1.08
32755050--32755081	13	2.3	15	89	10	50	25	37	25	12	1.91
32755160--32755239	6	12.0	6	72	25	56	20	3	0	76	0.94
32755161--32755240	8	9.5	8	75	14	54	18	3	0	77	0.92
32755165--32755239	29	2.7	27	80	11	80	20	4	0	76	0.95
32755160--32755240	25	3.3	23	75	16	74	19	3	0	76	0.93
32756134--32756182	21	2.4	21	86	6	66	77	2	10	10	1.07
32775885--32776164	138	2.0	138	96	0	515	31	18	22	27	1.98
32784123--32784227	27	3.9	27	75	5	86	25	15	23	35	1.94
32787209--32787316	51	2.1	51	98	0	207	26	19	15	37	1.92
32787603--32787714	58	1.9	58	88	0	170	33	12	20	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32789565--32789597	16	2.1	16	88	11	50	30	24	21	24	1.99
32793082--32793185	54	1.9	53	96	1	190	38	21	17	23	1.93
32796352--32796396	22	2.0	22	95	0	81	35	26	11	26	1.90
32808079--32808122	5	8.8	5	94	0	61	38	34	6	20	1.79
32812033--32812110	37	2.1	37	92	2	131	39	10	33	16	1.83
32814603--32814702	24	4.0	24	86	10	146	38	15	22	25	1.92
32814599--32814714	24	4.4	27	80	15	145	35	12	24	27	1.92
32814599--32814714	52	2.2	52	95	0	205	35	12	24	27	1.92
32822837--32823302	181	2.6	181	90	3	708	27	23	18	30	1.98
32823179--32823365	45	4.2	43	68	18	116	27	21	18	32	1.97
32823289--32823629	133	2.6	133	86	4	454	27	22	16	32	1.96
32823709--32823807	45	2.2	44	83	7	119	31	24	18	26	1.97
32823987--32824181	64	3.0	64	94	0	336	38	13	17	30	1.88
32825306--32825349	22	2.0	22	86	4	61	6	4	6	81	0.97
32838655--32838684	13	2.4	12	94	5	51	83	3	0	13	0.77
32838655--32838684	6	4.8	6	92	8	51	83	3	0	13	0.77
32848381--32848415	17	1.9	19	88	11	56	48	8	2	40	1.49
32849393--32850204	288	2.8	288	98	0	1563	44	19	11	25	1.84
32850585--32850637	24	2.3	22	87	9	79	43	0	5	50	1.25
32851053--32851097	18	2.5	18	92	0	81	44	8	15	31	1.77
32851053--32851103	18	2.8	19	88	8	79	43	11	15	29	1.82
32851839--32852092	132	1.9	132	87	0	373	22	20	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32852284--32852328	25	1.9	24	86	13	67	35	2	15	46	1.58
32855515--32855698	40	4.6	40	81	4	217	25	23	25	25	2.00
32855519--32855698	83	2.2	80	86	3	236	25	23	26	25	2.00
32861409--32861435	10	2.7	10	100	0	54	40	22	18	18	1.91
32865743--32865960	40	5.5	40	83	4	239	25	27	22	24	1.99
32873926--32874143	40	5.5	40	83	4	248	25	28	22	23	1.99
32876511--32876551	19	2.2	19	100	0	82	31	36	4	26	1.78
32877095--32877199	41	2.6	41	80	8	117	39	25	16	19	1.91
32877172--32877215	16	2.8	16	85	0	61	34	29	20	15	1.94
32888115--32888176	31	2.0	32	87	3	90	20	22	19	37	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295