genome.fa.s2.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  146  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49817463--49817549	37	2.4	37	90	0	129	43	13	21	20	1.87
49817990--49818233	27	9.0	27	87	0	326	40	6	22	30	1.79
49817990--49818233	81	3.0	81	88	0	371	40	6	22	30	1.79
49818239--49818301	26	2.4	27	86	7	85	28	9	19	42	1.82
49818283--49818365	27	3.1	27	91	0	121	30	19	18	32	1.95
49819480--49819541	6	10.3	6	89	0	79	16	3	4	75	1.10
49819480--49819541	18	3.4	18	88	0	88	16	3	4	75	1.10
49826402--49826492	44	2.0	45	85	6	123	37	9	28	24	1.87
49834304--49834357	6	8.8	6	76	11	56	50	12	20	16	1.78
49834316--49834401	25	3.4	25	86	0	118	44	12	22	20	1.85
49834525--49834632	27	4.0	26	82	10	110	37	21	22	19	1.95
49834525--49834632	54	2.0	53	82	5	128	37	21	22	19	1.95
49834865--49834905	20	2.0	20	90	0	64	41	29	14	14	1.86
49835214--49835337	27	4.6	26	80	9	115	28	17	17	36	1.93
49835224--49835337	54	2.1	54	83	0	147	29	17	15	36	1.91
49835321--49835559	27	8.9	26	78	10	110	29	7	22	40	1.81
49835337--49835406	26	2.7	26	88	6	97	30	7	27	35	1.83
49835346--49835526	27	6.8	26	80	8	159	29	7	23	39	1.82
49837532--49837641	6	17.8	6	71	15	73	48	11	20	20	1.80
49837544--49837619	31	2.5	31	91	0	116	46	13	21	19	1.84
49837575--49837641	25	2.7	25	85	0	98	47	13	19	19	1.82
49837544--49837641	31	3.4	29	76	16	96	46	12	20	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49837759--49837839	27	3.0	27	84	8	94	37	20	23	18	1.94
49837997--49838055	22	2.7	22	83	0	73	30	22	27	20	1.98
49838402--49838468	27	2.5	27	87	4	91	22	20	20	35	1.96
49842033--49842113	27	3.0	27	90	0	126	30	20	12	35	1.90
49842114--49842329	27	8.1	26	80	8	177	30	7	21	40	1.82
49844276--49844340	31	2.1	31	88	0	94	47	13	21	16	1.82
49844441--49844548	27	4.0	25	83	10	108	36	21	22	20	1.96
49844441--49844548	54	2.0	53	82	5	128	36	21	22	20	1.96
49845121--49845257	27	5.2	27	84	5	145	30	16	15	37	1.90
49845109--49845257	51	2.8	52	82	6	167	30	16	16	36	1.92
49845253--49845327	27	2.8	27	83	0	87	32	8	25	34	1.85
49845263--49845473	27	7.9	26	80	8	174	30	9	22	37	1.85
49847236--49847267	16	1.9	17	93	6	57	43	15	9	31	1.78
49847418--49847583	42	3.9	42	81	1	188	30	27	15	26	1.96
49849648--49849957	47	6.6	47	91	3	455	32	8	29	29	1.87
49855379--49855409	13	2.4	13	94	0	53	16	25	35	22	1.94
49857488--49857748	47	5.6	45	74	13	172	22	28	19	29	1.98
49857478--49857750	94	2.9	92	76	13	290	22	28	19	28	1.98
49863428--49863553	43	3.0	42	71	13	114	29	27	15	26	1.96
49865630--49865687	29	1.9	29	83	13	73	32	18	1	46	1.60
49870961--49871042	6	13.3	6	76	19	80	48	15	18	17	1.81
49870970--49871042	31	2.4	31	90	4	112	49	15	19	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49871185--49871249	27	2.4	27	82	5	69	36	24	21	16	1.94
49871795--49872848	27	39.3	27	84	2	1253	25	19	19	36	1.95
49872833--49873191	27	13.3	27	76	8	68	32	8	20	38	1.83
49872884--49873227	27	12.7	27	82	1	357	31	8	19	40	1.82
49872941--49873227	27	10.6	27	84	0	358	32	7	19	40	1.80
49872887--49873227	54	6.3	54	85	3	400	31	8	19	40	1.81
49872887--49873227	81	4.2	81	83	3	400	31	8	19	40	1.81
49893552--49893837	27	10.6	27	86	0	367	40	19	8	31	1.81
49893552--49893894	81	4.2	80	83	3	391	39	20	8	30	1.83
49893552--49893891	27	12.6	27	81	4	289	40	20	8	30	1.82
49893928--49894152	27	8.3	27	87	2	272	38	18	19	24	1.93
49893936--49894153	81	2.7	80	84	2	301	37	18	19	24	1.94
49894378--49894518	71	2.1	66	84	6	174	18	26	23	31	1.97
49894486--49894545	27	2.3	27	85	2	77	21	23	20	35	1.96
49894663--49894711	19	2.7	18	76	17	64	14	14	18	53	1.74
49894663--49894744	6	13.3	6	72	19	62	17	17	15	50	1.79
49894663--49894735	31	2.4	31	88	0	101	16	17	15	50	1.78
49895777--49895885	37	2.9	37	90	0	173	28	30	18	22	1.97
49896031--49896215	48	3.8	48	89	4	282	30	26	6	36	1.82
49896031--49896214	98	1.9	98	91	4	302	29	26	6	36	1.82
49896137--49896378	47	5.1	47	88	2	299	26	28	10	34	1.90
49896278--49896349	22	3.1	22	64	24	58	23	29	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49896300--49896379	25	3.3	25	65	16	69	30	26	8	35	1.87
49903608--49903715	41	2.7	41	72	7	103	23	19	25	31	1.98
49905770--49905938	40	4.2	40	93	3	270	24	27	23	24	2.00
49912180--49912272	44	2.2	42	82	5	107	25	12	24	36	1.91
49912199--49912301	44	2.3	44	81	3	118	28	13	25	33	1.94
49917310--49917424	47	2.5	47	85	4	144	29	29	17	23	1.97
49921079--49921116	13	2.9	13	96	0	67	44	23	13	18	1.85
49923764--49923826	25	2.5	25	94	0	108	22	23	23	30	1.99
49923789--49923892	50	2.1	50	81	0	118	25	20	21	33	1.97
49923764--49923886	25	4.9	25	81	5	90	23	21	21	34	1.97
49923814--49923896	25	3.3	25	76	6	78	26	19	19	34	1.95
49924044--49924105	31	2.1	30	82	17	76	45	8	17	29	1.77
49928163--49928187	12	2.1	12	100	0	50	32	16	32	20	1.94
49931853--49932199	170	2.0	170	99	0	685	34	21	17	25	1.96
49936246--49936306	30	2.0	30	100	0	122	47	19	19	13	1.82
49938485--49938526	15	2.7	16	85	14	61	0	28	0	71	0.86
49938483--49938524	21	2.0	21	86	13	61	0	26	0	73	0.83
49943847--49944065	48	4.7	48	80	8	236	24	16	31	27	1.97
49943847--49944063	90	2.3	94	82	7	255	23	16	31	28	1.96
49949112--49949278	85	2.0	85	98	0	325	39	19	11	28	1.88
49949408--49949534	47	2.7	46	79	9	141	25	29	19	25	1.99
49953459--49953723	46	5.7	46	77	7	214	23	29	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49961703--49962368	47	14.1	47	95	0	1062	31	9	30	29	1.88
49964038--49964177	55	2.5	55	82	6	167	27	27	28	16	1.97
49970608--49970693	42	2.0	43	80	10	97	26	25	19	27	1.99
49975264--49975353	42	2.1	42	93	0	153	43	17	15	23	1.87
49986831--49987000	48	3.5	48	81	10	159	29	17	27	26	1.97
50006982--50007161	93	1.9	93	85	2	245	30	27	15	26	1.96
50016667--50016827	41	3.9	41	79	0	160	36	18	19	25	1.94
50017294--50017394	50	2.0	50	88	1	150	30	5	8	54	1.55
50017437--50017469	17	1.9	17	100	0	66	33	12	6	48	1.65
50021532--50021608	29	2.7	29	93	0	127	27	29	18	24	1.98
50027600--50027701	37	2.8	37	92	0	159	25	30	18	25	1.98
50027820--50028029	47	4.5	47	92	0	321	29	31	7	31	1.85
50029681--50029742	33	1.9	32	84	12	83	25	0	1	72	0.94
50029769--50029809	14	2.8	15	82	13	50	34	0	0	65	0.93
50030815--50030859	18	2.4	19	88	7	65	57	4	2	35	1.31
50036138--50036205	27	2.5	26	79	6	82	41	19	13	26	1.88
50051603--50051677	21	3.5	21	77	3	60	14	20	24	41	1.89
50070683--50070709	13	2.1	13	100	0	54	14	40	37	7	1.74
50075704--50075873	45	3.8	45	92	1	272	25	30	22	22	1.99
50081669--50081712	20	2.2	20	84	11	56	27	27	15	29	1.96
50083648--50083676	15	1.9	15	100	0	58	58	0	0	41	0.98
50083774--50083818	19	2.5	18	85	7	56	40	8	0	51	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50092340--50092426	44	2.0	44	88	4	131	25	14	32	27	1.95
50092247--50092575	178	1.8	178	86	1	471	27	17	26	27	1.98
50092552--50092628	26	3.0	26	94	0	127	24	12	22	40	1.89
50092372--50092805	230	1.9	230	90	0	699	27	15	26	30	1.96
50092745--50092845	44	2.3	45	86	6	143	25	15	26	31	1.96
50092602--50093018	178	2.4	176	88	1	602	28	15	27	28	1.96
50092926--50093018	44	2.1	43	84	5	116	30	13	24	31	1.94
50094228--50094259	11	2.9	11	100	0	64	18	18	37	25	1.94
50096948--50097027	21	3.8	21	78	6	72	22	28	32	16	1.95
50108112--50108137	7	3.7	7	100	0	52	61	11	0	26	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295