genome.fa.s2.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  109  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35675946--35675975	11	2.7	11	94	0	51	30	0	13	56	1.37
35676050--35676092	16	2.6	16	82	13	52	34	4	2	58	1.32
35676873--35676919	23	2.0	23	95	0	85	40	4	6	48	1.48
35678089--35678122	18	1.9	17	94	5	59	0	58	0	41	0.98
35681027--35681093	34	1.9	35	93	3	118	46	11	8	32	1.72
35691080--35691125	23	2.0	23	84	12	60	45	10	6	36	1.65
35691087--35691131	23	2.0	23	82	8	56	40	13	8	37	1.76
35707755--35707900	42	3.5	42	80	9	156	31	23	15	29	1.95
35711558--35711608	25	2.0	26	92	3	86	47	17	5	29	1.71
35712996--35713048	24	2.2	24	93	0	88	30	3	45	20	1.69
35714448--35714558	27	4.2	26	86	7	143	17	24	21	36	1.94
35722823--35722860	18	2.1	18	90	9	60	52	15	10	21	1.72
35725768--35725824	25	2.3	24	82	11	71	28	21	19	31	1.97
35725782--35725845	24	2.6	25	85	5	85	28	23	25	23	2.00
35726054--35726190	27	5.1	27	87	0	157	25	21	18	34	1.96
35726052--35726196	54	2.7	54	83	1	184	24	21	18	35	1.96
35726190--35726303	27	4.2	27	79	9	115	29	7	18	44	1.76
35726233--35726344	27	4.1	27	75	4	91	26	7	25	41	1.81
35726323--35726479	27	5.8	27	88	0	215	40	8	22	28	1.84
35730452--35730539	46	1.9	46	95	0	158	32	18	20	28	1.96
35735664--35735736	37	2.0	37	97	0	137	30	21	21	26	1.99
35757743--35757905	42	3.9	42	82	4	193	30	14	23	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35764786--35764947	42	3.8	42	86	1	225	29	13	25	30	1.94
35764786--35764943	85	1.9	84	86	1	226	29	13	25	31	1.94
35766574--35766721	42	3.5	40	75	12	127	35	25	14	24	1.94
35766550--35766722	86	2.0	85	85	9	237	36	24	14	24	1.93
35770947--35771267	48	6.7	48	77	1	320	27	27	16	28	1.97
35770897--35771269	96	3.9	96	89	0	503	26	27	17	29	1.97
35778686--35778725	16	2.5	16	91	0	62	37	2	2	57	1.26
35778686--35778725	8	5.0	8	84	0	53	37	2	2	57	1.26
35780616--35780676	28	2.2	28	81	0	77	32	3	11	52	1.54
35781620--35781661	21	2.0	21	85	0	57	28	2	2	66	1.16
35785091--35785143	26	2.0	26	92	0	88	39	9	28	22	1.85
35791334--35791411	41	1.9	41	84	5	104	20	19	29	30	1.97
35793712--35794144	48	9.0	48	81	4	390	27	19	28	24	1.98
35793722--35794139	144	2.9	144	81	1	462	27	19	29	23	1.99
35803353--35803392	16	2.4	16	87	8	53	42	27	15	15	1.86
35809394--35809616	122	1.8	121	87	1	331	39	10	21	28	1.87
35816789--35816888	51	2.0	51	82	4	121	24	17	27	32	1.96
35823741--35823854	43	2.7	43	84	4	142	21	18	28	30	1.97
35823752--35823907	43	3.7	43	82	6	131	22	15	30	31	1.95
35826348--35826431	34	2.5	34	84	0	105	27	23	17	30	1.97
35832068--35832428	48	7.5	48	83	4	343	25	20	29	23	1.99
35832008--35832428	96	4.4	93	78	7	355	26	20	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35832061--35832428	144	2.6	143	80	6	409	25	20	29	23	1.99
35835772--35835856	44	1.9	44	88	9	129	22	21	27	29	1.99
35843743--35843835	44	2.1	45	86	6	127	22	18	26	32	1.97
35848614--35848662	25	2.0	25	88	8	73	48	0	10	40	1.37
35849620--35849691	35	2.1	35	89	0	108	29	16	25	29	1.97
35851428--35851547	29	4.2	29	82	3	145	28	30	13	27	1.94
35854472--35854617	27	5.4	27	80	4	125	41	22	6	29	1.80
35854480--35854617	54	2.6	54	84	2	170	42	23	6	28	1.79
35854600--35854847	27	9.2	27	84	1	291	32	21	5	40	1.76
35854522--35854847	54	6.0	54	83	1	332	34	21	6	37	1.79
35855174--35855233	27	2.3	27	85	2	77	21	23	20	35	1.96
35855352--35855445	6	15.3	6	73	20	79	18	17	14	50	1.79
35855352--35855431	31	2.6	32	86	6	119	17	17	15	50	1.79
35856634--35856678	21	2.1	22	83	4	56	26	2	15	55	1.52
35857907--35858184	141	2.0	141	91	0	448	22	19	28	29	1.98
35861223--35861271	18	2.7	18	77	0	53	36	24	18	20	1.94
35869780--35869951	43	4.0	42	75	11	145	34	23	17	24	1.96
35869780--35869939	86	1.9	85	82	8	200	33	24	18	24	1.97
35877844--35877959	39	3.0	39	94	0	196	24	21	27	26	1.99
35882159--35882281	44	2.9	43	80	6	117	33	24	17	25	1.96
35882172--35882305	44	3.1	44	80	8	116	33	26	15	24	1.95
35883493--35883679	93	2.0	93	97	0	356	24	23	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35884932--35885001	21	3.2	21	62	18	52	40	24	14	21	1.90
35887415--35887729	47	6.6	49	71	16	211	26	18	31	23	1.97
35887416--35887584	46	3.7	44	76	13	117	27	17	30	24	1.97
35894142--35894166	13	1.9	13	100	0	50	16	4	16	64	1.44
35894857--35895170	47	6.6	49	74	12	201	27	17	29	25	1.97
35895433--35895469	19	1.9	19	100	0	74	27	21	10	40	1.86
35896249--35896288	21	2.0	21	85	5	55	12	37	30	20	1.89
35904437--35904510	36	2.1	36	97	0	139	25	14	25	33	1.94
35916867--35916954	45	2.0	45	83	0	113	38	23	12	25	1.90
35919019--35919097	37	2.1	37	90	0	122	25	31	18	24	1.98
35919216--35919340	46	2.8	46	86	7	175	28	30	7	34	1.84
35919320--35919365	23	2.0	23	100	0	92	30	34	4	30	1.77
35919274--35919412	70	2.0	69	95	1	251	29	30	7	32	1.84
35919230--35919458	116	2.0	113	90	4	361	28	31	8	31	1.86
35919343--35919483	47	3.0	47	97	2	275	30	29	8	31	1.87
35921963--35921991	15	1.9	15	100	0	58	20	24	20	34	1.97
35923120--35923360	40	6.1	40	78	12	216	26	26	21	24	2.00
35923152--35923360	79	2.6	77	82	8	217	26	26	22	24	2.00
35923665--35923739	29	2.5	30	87	6	100	25	33	16	25	1.95
35923722--35923823	43	2.4	43	100	0	204	26	36	14	22	1.93
35925677--35925755	37	2.1	37	88	0	113	25	30	18	25	1.98
35925876--35926002	47	2.7	47	88	2	175	27	29	7	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35925982--35926027	23	2.0	23	100	0	92	30	34	4	30	1.77
35925935--35926074	70	2.0	70	95	0	253	29	30	7	32	1.84
35925888--35926121	117	2.0	117	89	1	362	28	30	8	32	1.86
35926005--35926146	47	3.0	47	97	0	275	30	28	8	32	1.87
35935801--35935840	20	2.0	20	95	0	71	30	32	10	27	1.89
35940596--35940736	60	2.4	59	82	11	155	26	24	20	28	1.99
35941072--35941134	26	2.4	26	81	7	74	26	11	26	34	1.90
35941910--35942054	71	2.0	71	100	0	290	57	2	19	20	1.53
35944401--35944433	13	2.6	13	90	4	50	48	12	0	39	1.40
35947316--35947375	6	11.2	5	81	12	59	76	1	5	16	1.04
35947340--35947377	15	2.5	15	87	12	60	76	0	5	18	0.97
35956985--35957044	25	2.4	25	83	10	70	26	28	20	25	1.99
35962226--35962324	28	3.5	28	88	4	128	27	14	27	31	1.95
35975682--35975733	26	2.0	26	100	0	104	38	7	7	46	1.61
35979057--35979261	27	7.6	27	87	3	151	30	28	14	26	1.95
35979057--35979260	54	3.8	54	84	3	266	30	28	14	26	1.95
35979057--35979261	81	2.5	82	84	3	261	30	28	14	26	1.95
35985634--35985768	37	3.9	37	70	20	112	27	31	17	23	1.97
35985679--35985729	26	2.0	26	96	0	93	21	33	21	23	1.97
35985642--35985760	63	1.9	63	89	0	184	26	30	18	24	1.98
35985973--35986260	47	6.1	47	87	0	414	27	29	11	32	1.91
35985973--35986261	141	2.0	141	93	0	488	27	29	11	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36001093--36001169	27	2.7	29	73	16	72	37	3	27	31	1.75
36282130--36282305	27	6.6	27	83	3	203	27	15	28	28	1.96
36282130--36282305	54	3.3	55	83	4	225	27	15	28	28	1.96
36282131--36282285	81	1.9	81	88	2	231	27	15	28	29	1.96
36289937--36290114	27	6.6	27	83	3	205	26	15	28	29	1.96
36289938--36290093	82	1.9	81	88	3	233	26	15	28	29	1.96
36289934--36290114	82	2.2	81	83	2	229	27	15	27	29	1.96
36304375--36304587	46	4.6	45	81	9	209	25	29	17	27	1.97
36304323--36304591	94	2.9	94	76	11	257	26	29	17	27	1.97
36307709--36307893	67	2.9	64	78	8	205	28	16	30	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295