genome.fa.s2.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  108  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35088348--35088480	49	2.7	48	86	3	167	27	22	28	21	1.99
35093719--35093942	40	5.7	40	82	7	233	25	28	20	25	1.99
35093719--35093943	79	2.8	78	80	6	247	25	28	20	25	1.99
35093874--35093951	40	1.9	41	82	10	97	26	28	20	24	1.99
35288102--35288194	27	3.4	27	81	1	87	31	29	15	24	1.95
35288118--35288269	27	5.5	27	75	12	121	30	27	15	25	1.96
35296198--35296375	27	6.6	27	79	3	115	28	28	16	26	1.97
35296198--35296375	54	3.3	55	80	10	204	28	28	16	26	1.97
35296219--35296374	82	1.9	81	85	3	215	28	28	16	26	1.97
35304781--35304888	43	2.5	43	84	1	155	22	16	28	32	1.96
35309840--35309985	48	3.0	48	90	4	222	34	6	27	30	1.83
35310126--35310228	37	2.8	37	89	0	152	23	21	33	22	1.98
35315015--35315039	12	2.1	12	100	0	50	24	24	24	28	2.00
35320520--35320703	40	4.6	40	81	8	212	25	26	23	25	2.00
35320520--35320703	83	2.3	80	86	3	253	25	26	23	25	2.00
35324241--35324376	43	3.2	43	67	12	136	24	28	19	27	1.98
35324239--35324398	84	1.9	86	88	5	245	27	26	18	28	1.98
35326225--35326254	15	2.1	15	93	6	53	36	26	6	30	1.82
35333181--35333341	86	1.9	86	94	0	286	32	24	14	27	1.95
35333157--35333343	42	4.3	43	74	14	163	31	26	16	26	1.97
35337148--35337270	28	4.4	28	90	2	176	26	11	27	34	1.91
35337148--35337270	55	2.2	57	88	2	178	26	11	27	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35337173--35337284	28	4.0	27	90	3	134	29	10	25	34	1.89
35347403--35347462	29	2.1	29	96	0	111	33	5	20	41	1.74
35348018--35348075	30	1.9	31	89	3	91	43	1	24	31	1.64
35355172--35355327	27	5.8	26	79	7	134	22	15	20	41	1.89
35355171--35355327	81	1.9	81	84	2	208	22	15	20	41	1.90
35355172--35355337	54	3.1	54	80	5	158	21	15	21	41	1.90
35362748--35362799	25	2.1	25	100	0	104	48	32	3	15	1.63
35366082--35366111	15	2.1	15	93	6	53	36	26	6	30	1.82
35373016--35373227	42	4.9	44	68	11	134	33	24	14	27	1.94
35373041--35373227	86	2.2	86	88	0	284	34	23	13	28	1.93
35373060--35373205	44	3.4	44	73	7	163	31	24	15	28	1.96
35381273--35381313	21	2.0	21	85	9	57	29	2	7	60	1.36
35387194--35387249	22	2.5	22	91	0	94	12	32	32	23	1.92
35388257--35388308	23	2.2	23	83	10	61	21	9	11	57	1.62
35399265--35399955	47	14.4	47	90	3	977	32	8	28	29	1.88
35399265--35399896	145	4.4	145	91	4	1010	32	8	28	30	1.87
35400074--35400152	37	2.1	37	90	0	122	26	18	29	25	1.98
35404708--35404980	48	5.7	48	74	7	151	27	19	28	24	1.98
35410161--35410213	20	2.7	20	93	0	88	18	30	30	20	1.97
35411755--35411835	42	1.9	42	87	2	117	27	23	17	32	1.97
35411725--35411835	43	2.6	42	78	2	123	28	24	15	31	1.95
35415661--35415701	20	2.0	20	100	0	82	24	9	9	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35416974--35417130	42	3.7	41	79	9	154	26	17	24	31	1.97
35420355--35420598	40	6.1	40	92	1	375	28	26	20	24	1.99
35421978--35422003	13	2.0	13	100	0	52	61	7	0	30	1.24
35432109--35432266	43	3.7	43	73	7	133	25	20	22	30	1.99
35455346--35455431	43	2.0	43	88	0	127	25	31	20	22	1.98
35467079--35467110	16	2.0	16	93	0	55	53	31	6	9	1.58
35474317--35474488	93	1.8	93	92	0	290	27	28	22	22	1.99
35474310--35474486	46	3.8	46	77	12	191	28	28	21	22	1.99
35481558--35481671	28	4.1	28	82	6	133	28	14	29	27	1.96
35481558--35481667	56	2.0	56	85	3	150	27	15	30	26	1.96
35483482--35483638	39	4.0	39	89	2	192	31	29	21	17	1.96
35485537--35485590	27	2.1	26	82	6	65	51	20	9	18	1.73
35503585--35503626	22	1.9	22	85	0	57	45	0	21	33	1.52
35505458--35505616	49	3.3	49	76	6	146	22	27	20	30	1.98
35510296--35510478	78	2.3	81	82	6	223	25	22	27	24	2.00
35510295--35510478	40	4.7	40	82	8	216	25	22	27	25	2.00
35518505--35518689	79	2.3	81	83	7	227	24	22	27	24	2.00
35518506--35518689	40	4.6	40	82	9	207	25	22	27	24	2.00
35518558--35518722	79	2.1	79	83	6	201	26	21	27	24	1.99
35526829--35526958	47	2.7	49	86	3	174	23	30	20	26	1.99
35526826--35527142	47	6.7	46	72	13	159	23	28	19	28	1.98
35528342--35528375	16	2.1	16	100	0	68	41	11	17	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35530070--35530139	35	2.0	35	91	0	113	32	24	14	28	1.94
35534940--35535196	40	6.5	40	85	2	297	26	28	22	22	1.99
35543115--35543371	40	6.5	40	87	2	306	24	28	23	23	1.99
35555078--35555181	26	4.0	26	93	0	181	35	24	7	32	1.84
35560712--35560838	42	3.0	41	82	8	148	29	26	15	27	1.96
35564158--35564210	21	2.5	21	81	0	70	20	33	28	16	1.95
35569810--35569846	18	2.1	18	89	0	56	59	13	2	24	1.47
35571984--35572342	46	7.7	47	72	8	175	28	18	26	26	1.98
35572022--35572230	92	2.2	92	75	15	214	30	19	26	23	1.98
35574104--35574268	42	3.9	42	79	4	172	27	23	16	32	1.96
35575562--35575686	49	2.6	49	94	0	223	28	19	27	24	1.98
35575651--35575785	49	2.7	51	79	7	161	27	20	29	22	1.98
35578127--35578391	98	2.7	97	83	5	320	29	18	28	24	1.98
35578130--35578391	49	5.4	48	80	8	280	29	18	28	24	1.98
35582946--35583011	32	2.1	32	88	0	96	27	25	24	22	2.00
35586698--35586749	25	2.1	25	92	0	86	13	17	15	53	1.72
35590493--35590660	46	3.6	45	76	6	147	23	27	21	27	1.99
35590396--35590663	94	2.9	93	78	8	278	23	30	20	25	1.99
35597961--35598125	42	3.9	42	81	6	190	33	16	23	26	1.96
35598297--35598326	15	1.9	16	93	6	53	33	0	26	40	1.57
35602903--35603006	53	2.0	53	96	0	190	37	9	21	31	1.86
35603539--35603664	47	2.7	45	79	9	128	30	19	26	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35609042--35609103	19	3.4	19	70	17	67	41	9	22	25	1.84
35609040--35609112	36	2.0	36	97	0	137	39	8	20	31	1.82
35609697--35609740	15	2.9	15	82	0	61	18	13	11	56	1.66
35615190--35615229	21	2.0	21	90	5	64	12	40	27	20	1.88
35617638--35617904	46	5.7	46	77	9	218	29	19	29	21	1.97
35617635--35617906	94	2.9	93	80	13	292	29	19	29	22	1.98
35622502--35622666	42	3.9	42	84	3	215	31	17	23	27	1.97
35628963--35629154	40	4.8	40	86	1	269	22	21	29	26	1.99
35632158--35632280	28	4.4	28	92	2	185	33	27	12	26	1.92
35636093--35636124	15	2.1	15	100	0	64	21	18	6	53	1.67
35638504--35638538	9	4.0	9	88	3	54	31	22	0	45	1.53
35640548--35640735	40	4.7	40	79	0	214	26	28	20	24	1.99
35640520--35640740	80	2.8	79	86	2	282	28	27	19	24	1.99
35648545--35648682	44	3.2	45	67	16	112	26	23	19	30	1.98
35648973--35648997	9	2.8	9	100	0	50	24	24	0	52	1.48
35651405--35651437	17	1.9	17	88	11	50	30	24	12	33	1.91
35652363--35652387	9	2.8	9	100	0	50	48	0	0	52	1.00
35653619--35653662	22	2.0	22	86	0	61	52	0	0	47	1.00
35653682--35653723	13	2.9	14	80	13	50	54	0	0	45	0.99
35653686--35653722	16	2.3	16	86	13	58	59	0	0	40	0.97
35653755--35653811	15	3.5	15	71	17	51	49	1	1	47	1.22
35654270--35654308	14	2.8	14	84	0	51	30	17	10	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35659126--35659173	24	2.1	23	92	7	80	37	16	4	41	1.68
35660313--35660609	131	2.3	131	78	4	305	35	17	18	28	1.94
35660488--35660796	130	2.4	130	81	3	291	35	18	18	28	1.94
35660576--35660827	130	1.9	129	84	4	337	34	16	17	31	1.92
35661388--35661429	21	2.0	21	81	9	50	54	0	7	38	1.28
35666262--35666310	24	2.0	24	100	0	98	26	16	20	36	1.93
35666501--35666546	21	2.2	21	88	7	67	63	0	6	30	1.20
35666501--35666542	19	2.0	22	86	13	63	66	0	7	26	1.17
35669278--35669323	19	2.4	19	96	3	83	28	10	13	47	1.76
35671980--35672322	170	2.0	174	86	5	482	48	9	28	13	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295