genome.fa.s2.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  37  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10428874--10428905	7	4.9	7	88	11	50	59	0	25	15	1.36
10429965--10430123	27	5.9	27	84	10	200	35	22	23	18	1.96
10429965--10430123	54	3.0	54	91	2	250	35	22	23	18	1.96
10430227--10430301	26	2.8	27	85	2	98	30	12	21	36	1.90
10431735--10431842	26	4.2	26	91	2	173	36	23	7	33	1.83
10442132--10442198	31	2.2	30	84	7	82	40	17	1	40	1.59
10444776--10444834	15	4.2	14	74	22	52	8	15	0	76	1.01
10444856--10444898	18	2.4	17	84	7	50	51	4	0	44	1.22
10448673--10448727	23	2.4	22	80	14	58	67	1	3	27	1.17
10452935--10452987	16	3.4	16	67	27	51	32	0	16	50	1.46
10452936--10452996	30	2.0	30	100	0	122	32	0	16	50	1.45
10455432--10455468	18	2.1	18	90	10	58	59	0	5	35	1.20
10456033--10456110	9	8.7	9	81	5	86	43	20	10	25	1.83
10456041--10456109	18	3.8	18	90	0	102	40	21	11	26	1.87
10457691--10457749	31	2.0	28	83	9	73	49	0	1	49	1.11
10474728--10474785	26	2.2	26	84	6	73	17	18	22	41	1.90
10478083--10478109	14	1.9	14	100	0	54	33	14	22	29	1.94
10478671--10478708	18	2.1	18	90	9	60	26	21	21	31	1.98
10480121--10480214	47	2.0	47	95	0	170	38	8	19	34	1.82
10488185--10488231	15	3.2	14	82	14	51	46	8	2	42	1.46
10490210--10490246	19	1.9	19	88	0	56	35	27	8	29	1.85
10490968--10491025	30	1.9	30	85	0	80	43	1	34	20	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10499709--10499775	35	1.9	35	84	6	91	20	19	25	34	1.96
10500752--10500845	31	3.0	31	100	0	188	19	6	19	55	1.64
10502512--10502544	17	1.9	17	93	0	57	42	0	0	57	0.98
10508902--10508985	37	2.3	35	82	13	100	34	1	2	61	1.16
10509606--10509637	16	1.9	17	93	6	57	68	0	0	31	0.90
10513479--10513548	24	2.9	24	77	10	63	60	0	7	32	1.24
10513479--10513527	24	2.0	25	84	4	64	55	0	8	36	1.30
10513832--10513897	32	2.0	33	85	2	89	45	4	7	42	1.53
10514039--10514100	31	2.0	30	81	9	72	43	3	4	48	1.40
10531072--10531118	24	2.0	24	95	4	87	57	17	8	17	1.63
10533320--10533353	17	1.9	18	88	5	52	50	11	0	38	1.39
10533570--10533628	31	1.9	31	82	6	75	45	16	27	10	1.80
10537856--10537889	16	2.2	15	89	5	50	67	0	26	5	1.13
10538744--10538837	27	3.5	28	78	11	90	59	17	9	13	1.60
10539549--10539618	27	2.6	28	82	8	83	60	14	11	14	1.60
10540213--10540247	2	17.5	2	100	0	70	51	0	48	0	1.00
10542484--10542545	24	2.4	27	81	13	76	58	16	12	12	1.64
10545873--10545910	15	2.5	15	95	0	67	23	31	10	34	1.89
10545877--10545910	12	2.8	12	95	0	59	23	32	8	35	1.86
10551832--10551985	77	2.0	77	98	0	299	31	18	16	33	1.93
10555416--10555497	42	1.9	43	90	5	130	34	18	15	31	1.92
10560325--10560372	25	1.9	24	84	16	62	29	16	6	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10560467--10560560	31	3.0	29	73	11	80	27	20	18	34	1.95
10562790--10562957	56	2.9	56	83	2	201	48	11	14	25	1.78
10562790--10563003	115	1.9	115	81	9	267	48	12	14	25	1.78
10563826--10563891	29	2.2	31	81	5	73	31	13	16	37	1.88
10566453--10566560	29	3.8	28	81	3	108	31	20	15	32	1.94
10573734--10573772	4	9.2	4	89	10	60	69	0	5	25	1.09
10573734--10573772	9	4.6	9	96	3	64	69	0	5	25	1.09
10573731--10573780	13	3.8	13	84	12	59	68	0	4	28	1.08
10575192--10575293	47	2.2	47	82	3	116	16	22	24	36	1.94
10575398--10575461	18	3.6	18	78	0	74	40	14	12	32	1.83
10575380--10575465	36	2.4	36	76	0	100	39	12	12	34	1.82
10577233--10577597	46	8.0	46	86	2	421	21	23	14	41	1.89
10577238--10577597	92	3.9	93	87	3	471	20	23	14	41	1.89
10581141--10581265	26	5.0	26	69	14	93	39	22	20	17	1.93
10581225--10581302	26	3.1	26	75	10	81	42	19	16	21	1.89
10584571--10584614	18	2.5	17	88	3	61	18	25	38	18	1.92
10586033--10586072	21	1.9	21	85	10	55	57	2	5	35	1.34
10586024--10586086	31	2.1	31	82	8	76	57	4	4	33	1.41
10590432--10590534	42	2.4	43	79	9	113	33	23	16	26	1.95
10590465--10590574	44	2.6	43	85	7	143	30	24	20	24	1.98
10591137--10591182	23	2.0	23	91	0	74	45	15	10	28	1.79
10592455--10592513	32	1.9	30	89	6	91	35	15	0	49	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10592766--10592806	20	2.0	22	85	9	59	34	7	7	51	1.58
10594081--10594133	24	2.3	23	86	3	70	32	28	28	11	1.91
10594198--10594243	23	2.0	23	86	0	65	34	23	26	15	1.94
10594294--10594368	27	2.9	25	75	18	64	36	16	24	24	1.94
10595608--10595667	5	11.8	5	74	15	52	36	3	1	58	1.25
10598551--10598837	23	11.7	23	68	12	103	35	22	25	17	1.95
10598551--10598716	24	7.0	24	71	9	117	36	22	24	16	1.94
10605198--10605223	10	2.6	10	100	0	52	50	0	23	26	1.50
10609012--10609073	27	2.3	26	76	13	63	38	1	11	48	1.49
10612760--10612837	6	13.3	6	80	12	83	16	3	0	79	0.87
10614132--10614157	9	2.9	9	100	0	52	92	0	7	0	0.39
10614131--10614161	10	3.2	10	90	9	55	90	0	9	0	0.46
10614130--10614172	13	3.4	13	77	6	52	88	0	11	0	0.52
10614133--10614172	16	2.4	17	87	4	55	87	0	12	0	0.54
10614732--10614760	5	5.8	5	100	0	58	20	0	0	79	0.74
10622803--10622916	43	2.7	43	81	8	117	28	12	24	34	1.92
10624303--10624366	32	2.0	32	90	0	101	28	12	17	42	1.85
10625875--10625908	17	1.9	18	88	5	52	61	2	0	35	1.11
10629853--10630448	78	7.7	78	86	2	797	35	22	8	33	1.85
10629853--10630442	234	2.5	233	89	1	887	35	22	8	33	1.85
10631423--10631474	21	2.4	21	78	9	52	26	1	25	46	1.63
10631445--10631504	22	2.8	22	68	12	52	25	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10631522--10631578	14	4.0	14	76	2	51	19	0	40	40	1.51
10631794--10631843	22	2.3	21	79	3	55	24	0	30	46	1.53
10631835--10631875	14	2.9	15	85	7	59	19	2	43	34	1.64
10631828--10631867	21	1.9	21	84	0	53	15	2	42	40	1.60
10641923--10642140	39	5.6	39	94	0	391	22	25	29	22	1.99
10642087--10642200	60	1.9	60	96	0	210	22	27	29	20	1.98
10642148--10642258	39	2.8	39	94	0	195	18	26	30	24	1.98
10642049--10642239	99	1.9	99	96	0	355	21	25	29	22	1.99
10642009--10642258	138	1.8	138	93	0	437	20	26	30	22	1.99
10645215--10645274	30	2.0	30	83	6	77	21	31	21	25	1.98
10650804--10650924	42	2.9	42	84	7	147	23	18	36	22	1.95
10656206--10656250	22	2.0	22	95	0	81	46	11	17	24	1.81
10664146--10664193	25	2.0	25	84	8	64	45	0	2	52	1.12
10664296--10664346	20	2.5	20	90	0	75	60	3	1	33	1.26
10670675--10670767	43	2.2	44	90	3	145	51	12	6	29	1.65
10675413--10675509	43	2.3	44	89	5	146	49	13	6	30	1.66
10675770--10675808	20	2.0	19	85	5	51	69	0	15	15	1.20
10693506--10693583	40	2.0	40	89	0	120	17	14	30	37	1.90
10694058--10694101	22	2.0	22	95	0	79	38	18	11	31	1.86
10702164--10702438	143	1.9	143	89	1	426	34	21	21	21	1.96
10702233--10702455	74	3.1	72	70	14	188	34	21	20	22	1.97
10702599--10702671	36	2.0	36	86	5	103	39	21	1	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10705901--10705933	17	1.9	17	93	0	57	75	18	0	6	1.00
10705895--10705941	14	3.1	14	77	16	58	72	19	0	8	1.10
10708261--10708311	26	2.0	24	82	14	59	33	7	21	37	1.82
10710584--10710613	14	2.1	14	93	0	51	46	36	0	16	1.47
10715729--10715771	13	2.9	16	77	22	58	79	0	16	4	0.90
10715713--10715765	14	3.6	14	76	16	54	79	0	11	9	0.94
10716830--10716861	16	1.9	17	93	6	57	62	9	9	18	1.52
10716887--10717094	64	3.2	64	92	0	353	30	17	14	37	1.90
10717294--10717627	133	2.5	132	80	8	333	28	17	26	26	1.98
10717413--10717639	44	5.1	43	68	20	119	27	17	25	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295