genome.fa.s2.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  123  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42155303--42155334	15	2.1	15	100	0	64	40	18	18	21	1.91
42165480--42165562	43	1.9	43	92	0	139	26	15	26	31	1.96
42170628--42170660	17	1.9	17	93	0	57	30	0	0	69	0.88
42171472--42171514	17	2.5	17	96	0	77	48	0	4	46	1.22
42172516--42172570	7	7.6	7	80	8	65	18	0	38	43	1.50
42172516--42172570	15	3.7	15	75	4	67	18	0	38	43	1.50
42172517--42172566	22	2.3	22	89	0	73	20	0	34	46	1.51
42173286--42173333	26	1.9	24	87	8	69	29	2	6	62	1.31
42179677--42179928	43	6.0	43	86	9	333	30	28	16	25	1.96
42179677--42179928	125	2.0	126	89	3	389	30	28	16	25	1.96
42183340--42183388	18	2.7	19	84	9	66	42	12	18	26	1.85
42183700--42184251	27	20.6	27	86	0	660	43	19	14	23	1.87
42188540--42188662	23	5.2	22	74	17	90	22	21	20	35	1.96
42188574--42188678	23	4.6	23	79	14	110	21	19	20	38	1.94
42188568--42188662	45	2.1	46	88	7	140	20	22	21	36	1.95
42188574--42188678	45	2.3	44	84	11	131	21	19	20	38	1.94
42188849--42188926	20	3.9	19	81	8	84	33	11	16	38	1.85
42188857--42188941	20	4.2	20	77	14	59	35	10	17	36	1.85
42188849--42188953	40	2.6	38	82	10	129	35	9	16	39	1.81
42193478--42193587	43	2.6	42	85	5	143	25	17	26	30	1.97
42198409--42198503	25	3.7	26	74	5	77	31	22	22	24	1.98
42210546--42210601	25	2.2	25	77	22	64	60	1	1	35	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42211442--42211475	16	2.2	15	89	5	50	55	0	0	44	0.99
42212765--42212816	23	2.2	23	93	3	86	13	17	26	42	1.86
42216553--42216725	48	3.6	48	92	0	265	28	18	28	24	1.98
42216553--42216766	48	4.5	48	89	1	187	28	18	26	26	1.98
42216730--42216848	42	2.8	42	76	0	103	30	15	24	29	1.96
42225268--42225310	20	2.2	20	83	8	52	37	25	4	32	1.77
42227753--42227804	26	2.0	26	96	0	95	21	11	21	46	1.82
42238212--42238272	27	2.3	27	85	0	77	40	18	14	26	1.89
42242764--42242936	46	3.7	46	77	13	183	31	26	19	22	1.98
42242769--42242940	93	1.8	93	92	0	290	30	27	19	22	1.98
42243359--42243418	30	2.0	30	90	0	93	30	25	8	36	1.85
42251119--42251534	203	2.0	203	92	0	697	28	12	31	27	1.93
42253243--42253276	18	1.9	18	88	5	52	20	23	41	14	1.89
42260777--42260870	25	3.8	25	73	5	91	28	21	22	27	1.99
42260752--42260858	50	2.1	50	84	3	144	28	23	21	26	1.99
42263305--42263475	93	1.8	93	94	0	306	28	28	21	21	1.98
42263300--42263472	46	3.7	46	77	13	201	29	27	20	21	1.98
42276970--42277355	47	8.1	47	87	5	522	30	11	30	26	1.92
42277044--42277119	24	3.2	24	62	23	61	28	13	32	25	1.93
42276970--42277355	98	4.0	97	89	4	570	30	11	30	26	1.92
42277329--42277419	46	2.0	46	82	0	110	32	8	31	26	1.87
42277564--42277672	37	2.9	37	93	0	173	24	19	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42278928--42279479	40	13.8	40	91	0	843	22	21	29	26	1.99
42279691--42279799	57	1.9	57	88	1	164	23	19	28	28	1.98
42294552--42294659	43	2.5	43	89	3	164	26	13	23	36	1.92
42297897--42297970	24	3.1	24	66	21	64	39	24	14	21	1.91
42297880--42298019	48	2.9	49	86	3	185	35	25	17	22	1.95
42297890--42297966	27	3.1	27	66	21	76	37	23	16	22	1.94
42302569--42302680	51	2.2	50	93	1	188	33	16	22	26	1.96
42321708--42321861	27	5.8	26	75	9	105	40	22	9	28	1.84
42321735--42321845	53	2.1	52	86	1	132	42	20	9	27	1.82
42321839--42321953	27	4.4	27	81	6	146	33	20	21	24	1.97
42321759--42321872	54	2.1	53	80	7	124	42	21	10	25	1.85
42322089--42322179	27	3.4	27	81	3	105	20	20	20	37	1.95
42322329--42322395	28	2.4	28	82	2	73	22	19	23	34	1.97
42322363--42322490	33	3.9	33	76	7	125	25	19	25	28	1.99
42331756--42331793	16	2.4	16	86	4	51	44	15	15	23	1.85
42333905--42334077	46	3.7	46	75	13	183	22	20	27	30	1.98
42333902--42334072	93	1.8	93	92	0	288	22	20	28	29	1.98
42338153--42338209	25	2.3	25	87	0	78	36	24	15	22	1.94
42350526--42350794	47	5.7	47	74	12	169	26	19	30	24	1.98
42352319--42352456	43	3.2	44	80	4	165	25	14	26	34	1.94
42354648--42354751	50	2.1	50	82	7	122	37	21	16	25	1.93
42354648--42354765	25	4.7	24	76	6	101	36	22	16	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42380029--42380061	13	2.6	13	90	4	50	48	12	0	39	1.40
42382783--42382874	5	17.8	5	73	20	59	77	1	4	17	0.99
42382803--42382878	6	12.8	6	76	8	75	78	1	3	15	0.96
42382784--42382878	17	5.8	16	75	18	65	76	1	4	17	1.00
42388231--42388263	13	2.6	13	90	4	50	48	12	0	39	1.40
42391741--42391874	40	3.4	40	89	1	180	48	5	21	23	1.72
42402812--42402845	17	1.9	17	88	5	50	32	0	2	64	1.08
42414110--42414140	16	1.9	16	93	0	53	35	22	0	41	1.54
42414107--42414146	20	2.0	20	85	0	53	37	22	0	40	1.54
42414390--42414578	55	3.5	53	78	11	170	22	25	17	34	1.96
42415970--42416001	4	8.5	4	86	13	50	43	0	28	28	1.55
42415970--42416001	11	2.9	11	100	0	64	43	0	28	28	1.55
42415959--42416001	22	2.0	22	85	0	59	41	2	23	32	1.67
42415970--42416001	7	4.2	8	84	15	50	43	0	28	28	1.55
42417921--42417981	25	2.4	26	86	8	81	40	11	9	37	1.75
42422338--42422443	49	2.2	49	80	11	119	33	26	11	28	1.91
42422821--42422846	13	2.0	13	100	0	52	46	7	0	46	1.31
42425834--42426017	48	3.8	48	81	3	183	28	19	26	26	1.99
42425839--42426017	96	1.9	96	83	4	236	27	20	26	25	1.99
42425924--42426215	42	6.8	42	71	13	182	26	17	25	30	1.97
42426022--42426215	85	2.3	85	82	5	223	27	15	24	31	1.96
42434896--42434932	17	2.2	17	100	0	74	29	0	18	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42440934--42440988	29	2.0	28	82	7	67	60	3	7	29	1.41
42441195--42441291	3	32.7	3	76	6	90	60	4	5	29	1.37
42444082--42444299	40	5.5	40	87	2	298	25	27	22	24	2.00
42447329--42447364	4	9.0	4	93	0	63	47	0	2	50	1.15
42447420--42447472	21	2.5	20	82	11	61	66	0	7	26	1.18
42447819--42447843	13	1.9	13	100	0	50	56	0	0	44	0.99
42450037--42450083	24	2.0	24	86	0	67	74	6	8	10	1.22
42451069--42451118	17	2.9	17	82	8	57	50	2	2	46	1.24
42455830--42455871	20	2.2	18	87	8	57	7	14	2	76	1.10
42456247--42456283	12	3.0	13	84	7	51	21	32	0	45	1.52
42463397--42463436	21	1.9	21	89	0	62	57	2	5	35	1.34
42464736--42464781	23	2.0	23	91	0	74	50	13	2	34	1.53
42469293--42469347	29	1.9	29	85	10	78	40	3	3	52	1.36
42469468--42469500	17	1.9	17	93	0	57	69	0	3	27	1.03
42473319--42473392	21	3.5	21	72	13	62	47	2	4	45	1.35
42473566--42473607	22	1.9	21	90	5	57	52	2	0	45	1.13
42480825--42480873	19	2.6	19	93	0	80	30	14	6	48	1.67
42488633--42488710	27	3.0	25	80	9	86	52	5	8	33	1.55
42488681--42488741	24	2.5	24	78	7	70	55	4	11	27	1.56
42488861--42488975	44	2.6	43	78	10	126	60	3	2	33	1.28
42488882--42488979	22	4.5	22	79	13	89	61	4	1	33	1.22
42488919--42488975	10	5.3	10	76	15	60	63	1	0	35	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42488859--42488976	42	2.6	44	77	17	127	60	3	2	33	1.27
42489177--42489208	17	1.9	16	93	6	55	53	12	0	34	1.39
42489216--42489373	3	52.7	3	66	18	62	59	3	6	30	1.39
42489325--42489386	32	1.9	33	83	9	83	62	0	8	29	1.23
42495163--42495206	21	2.1	21	86	0	61	29	9	6	54	1.58
42499786--42499913	64	2.0	64	93	0	220	31	17	14	37	1.89
42499980--42500151	45	3.9	44	75	11	154	30	17	23	28	1.97
42503774--42503825	9	5.3	10	77	13	54	21	1	1	75	1.00
42504370--42504395	3	8.7	3	100	0	52	30	0	0	69	0.89
42515379--42515413	4	8.8	4	93	0	61	2	25	0	71	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295