genome.fa.s2.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  162  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55304538--55304568	8	3.8	8	95	4	53	48	3	0	48	1.17
55304771--55304830	19	3.2	18	79	9	66	68	0	1	30	0.99
55306940--55306974	18	1.9	18	88	0	52	68	0	2	28	1.04
55307389--55307565	94	1.9	94	86	2	257	37	14	16	30	1.89
55315041--55315070	15	2.0	15	93	0	51	10	30	13	46	1.75
55315048--55315098	20	2.5	20	77	0	57	9	25	11	52	1.68
55315053--55315107	25	2.2	25	83	6	67	7	21	14	56	1.63
55321094--55321137	21	2.1	21	87	8	63	11	15	6	65	1.44
55324524--55324566	18	2.3	19	84	15	54	23	6	2	67	1.27
55326633--55326716	40	2.1	40	95	0	150	21	2	27	48	1.62
55328206--55328274	24	2.8	24	84	4	84	26	18	14	40	1.89
55328228--55328344	24	5.0	24	73	12	82	25	24	12	36	1.91
55328238--55328361	22	5.4	21	71	21	72	25	26	12	35	1.92
55328284--55328384	23	4.4	23	69	22	77	25	25	14	33	1.95
55328238--55328395	69	2.3	69	95	1	280	25	26	13	34	1.93
55329404--55329546	65	2.2	65	82	5	164	21	25	27	25	1.99
55331950--55332157	67	3.2	64	78	10	215	31	17	29	22	1.96
55340662--55340697	17	2.1	18	94	5	65	44	2	0	52	1.15
55346229--55346265	16	2.3	16	86	13	58	40	0	0	59	0.97
55358440--55358500	17	3.8	17	77	16	67	39	1	0	59	1.08
55358442--55358491	26	1.9	26	84	15	68	38	2	0	60	1.09
55358444--55358502	24	2.4	25	81	13	70	37	1	0	61	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55358454--55358501	19	2.6	19	78	18	57	39	2	0	58	1.10
55370686--55371072	176	2.2	175	86	2	544	34	19	19	27	1.96
55370998--55371156	87	1.8	86	82	12	193	32	18	22	27	1.97
55372746--55372806	33	1.9	32	83	6	79	36	18	0	45	1.49
55373062--55373117	22	2.4	22	85	8	67	35	1	0	62	1.06
55373054--55373127	16	4.9	15	72	18	55	35	1	0	63	1.03
55373061--55373120	24	2.5	25	81	8	79	35	1	0	63	1.05
55375812--55375858	6	7.5	6	81	9	58	76	4	2	17	1.04
55375815--55375853	20	2.0	20	89	0	60	71	5	2	20	1.17
55375880--55375956	9	8.6	9	80	11	77	29	9	19	41	1.82
55375880--55375949	27	2.6	27	82	8	97	28	10	21	40	1.85
55385608--55385798	53	3.4	54	75	12	170	39	4	11	44	1.62
55386950--55387024	31	2.5	31	91	2	116	45	12	20	22	1.83
55386982--55387170	87	2.1	89	83	7	235	42	11	25	20	1.86
55387130--55387200	29	2.4	29	88	6	99	46	11	26	15	1.79
55387040--55387209	89	1.9	89	84	6	227	40	13	26	19	1.89
55386950--55387215	30	9.0	30	71	8	125	42	12	24	21	1.87
55386982--55387230	89	2.8	89	79	7	215	40	12	26	20	1.88
55386950--55387258	119	2.6	116	80	3	341	41	12	24	21	1.88
55389261--55389297	15	2.4	15	95	4	65	32	5	18	43	1.73
55394819--55394844	13	2.0	13	100	0	52	30	38	0	30	1.58
55401750--55401791	19	2.3	18	88	12	59	69	4	0	26	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55401731--55401803	25	2.8	25	75	19	78	64	6	1	27	1.27
55419289--55419330	18	2.3	18	95	0	75	23	28	19	28	1.98
55422297--55422570	48	5.7	47	81	7	286	29	20	27	23	1.98
55422297--55422573	96	2.9	95	84	3	333	29	20	27	23	1.98
55430432--55430605	45	3.8	45	80	12	219	28	28	20	21	1.98
55430440--55430609	93	1.8	92	96	1	313	28	28	21	21	1.99
55436757--55436810	20	2.7	20	88	0	72	7	31	24	37	1.83
55436757--55436817	20	3.1	18	79	13	59	8	32	21	37	1.83
55437009--55437040	7	4.6	7	100	0	64	31	12	15	40	1.85
55442207--55442241	13	2.7	13	100	0	70	11	34	31	22	1.90
55443256--55443373	46	2.6	46	85	8	143	23	29	20	26	1.99
55443256--55443418	47	3.6	44	81	10	159	23	29	19	27	1.98
55446599--55446635	18	2.0	19	85	15	51	27	18	10	43	1.83
55448321--55448385	32	2.0	32	100	0	130	43	6	9	41	1.61
55449495--55449532	19	2.0	19	85	10	51	52	5	21	21	1.66
55460690--55460748	30	2.0	30	100	0	118	40	6	30	22	1.79
55469315--55469362	24	2.0	24	83	0	60	35	2	12	50	1.52
55469328--55469362	12	2.9	12	82	0	52	34	0	11	54	1.37
55469328--55469378	24	2.0	25	85	7	68	33	1	9	54	1.44
55472213--55472288	34	2.2	34	97	0	143	43	22	14	19	1.87
55474344--55474393	21	2.4	21	100	0	100	24	34	30	12	1.91
55487150--55487220	35	2.0	35	100	0	142	43	16	14	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55488518--55488635	46	2.6	44	85	8	148	27	18	29	24	1.98
55488606--55488779	47	3.6	47	76	11	165	27	16	30	25	1.96
55490476--55490514	20	2.0	20	100	0	78	20	35	30	12	1.90
55490476--55490521	20	2.3	20	92	0	74	19	39	30	10	1.86
55491514--55491565	28	1.9	26	84	7	68	36	0	19	44	1.51
55491904--55492150	125	2.0	125	90	1	388	23	14	28	32	1.94
55503012--55503041	16	1.9	16	93	6	53	50	0	13	36	1.42
55509557--55509695	57	2.4	57	82	8	158	31	23	18	26	1.97
55530243--55530445	75	2.7	75	80	1	246	26	12	23	37	1.91
55530263--55530439	25	7.1	25	65	7	72	25	11	23	39	1.89
55530243--55530625	75	5.1	75	74	5	245	29	12	21	35	1.91
55530492--55530630	25	5.5	24	71	10	91	33	13	21	30	1.92
55530454--55530636	76	2.4	75	80	7	199	33	12	21	32	1.91
55530492--55530659	76	2.2	75	81	6	185	32	13	23	30	1.93
55539829--55539877	22	2.2	23	82	10	57	36	6	2	55	1.37
55541091--55541127	19	1.9	19	94	0	65	0	43	10	45	1.39
55541149--55541210	15	4.1	15	78	15	65	0	24	8	67	1.17
55541172--55541205	13	2.7	13	95	4	61	0	29	8	61	1.26
55541167--55541236	30	2.3	30	85	7	88	4	30	11	54	1.55
55543498--55543545	18	2.8	18	74	22	50	43	0	0	56	0.99
55543515--55543566	15	3.6	15	80	12	56	44	0	1	53	1.11
55543563--55543757	56	3.1	65	65	22	182	41	2	6	49	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55543481--55543801	119	2.7	120	98	1	619	43	1	4	50	1.32
55543634--55543685	15	3.6	15	80	12	56	44	0	1	53	1.11
55543763--55543804	15	2.7	16	82	14	52	45	0	2	52	1.13
55543754--55543795	15	2.9	15	82	10	52	47	0	0	52	1.00
55544360--55544407	19	2.6	19	87	9	64	58	2	0	39	1.10
55544372--55544421	26	1.9	26	91	0	82	56	2	0	42	1.11
55548679--55548730	20	2.7	20	80	16	65	48	15	0	36	1.45
55549438--55549507	32	2.2	31	78	16	72	41	2	7	48	1.45
55549844--55549899	16	3.2	16	81	16	67	69	0	1	28	0.98
55549844--55549913	19	3.9	16	78	17	50	65	2	1	30	1.15
55552411--55552554	56	2.6	55	79	13	161	25	23	15	35	1.94
55552633--55552667	9	3.8	9	88	3	52	34	22	11	31	1.90
55556809--55556848	20	2.0	20	100	0	80	50	35	0	15	1.44
55559806--55559848	13	3.3	13	80	0	50	32	11	0	55	1.36
55570053--55570081	14	2.0	15	93	6	51	27	0	20	51	1.47
55571232--55571343	41	2.7	41	77	10	120	20	19	27	32	1.97
55573648--55573742	37	2.6	37	84	3	120	21	14	23	41	1.90
55577411--55577451	22	1.9	22	95	5	75	19	29	41	9	1.83
55578500--55578755	46	5.5	47	77	13	194	24	30	18	27	1.98
55586228--55586436	46	4.5	44	73	16	156	26	29	17	26	1.97
55586168--55586439	94	2.9	88	76	14	262	25	29	18	26	1.98
55586776--55586833	30	1.9	30	86	6	82	29	25	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55587689--55587715	13	2.1	13	100	0	54	14	33	37	14	1.88
55610729--55610802	29	2.5	30	84	6	98	28	16	29	25	1.97
55625137--55625319	79	2.3	81	84	7	232	25	27	22	24	2.00
55625116--55625319	40	5.1	40	82	8	238	25	27	22	24	2.00
55626446--55626565	56	2.1	56	98	0	231	22	23	9	45	1.81
55633026--55633208	79	2.3	81	84	7	232	25	27	22	24	2.00
55633005--55633208	40	5.1	40	82	8	238	25	27	22	24	2.00
55636822--55636978	43	3.7	43	75	6	140	33	24	15	27	1.95
55636820--55636978	86	1.9	85	81	6	196	33	24	15	27	1.95
55644464--55644519	26	2.2	26	100	0	112	35	26	7	30	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295