genome.fa.s2.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  155  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52770252--52770331	15	5.4	15	80	7	92	58	13	17	10	1.62
52770263--52770340	15	5.2	15	78	9	79	56	15	16	11	1.67
52773231--52773401	93	1.8	93	87	2	254	28	28	20	23	1.99
52773223--52773398	46	3.8	46	74	14	164	28	27	19	23	1.98
52774707--52774834	46	2.7	48	77	8	147	46	11	8	33	1.71
52774804--52774840	20	1.9	19	89	10	58	51	10	5	32	1.60
52778847--52779054	40	5.2	40	81	7	226	25	28	22	24	1.99
52778833--52779051	79	2.7	79	81	6	230	25	28	21	24	1.99
52786927--52787109	39	4.6	38	77	12	147	24	26	21	27	1.99
52786927--52787144	79	2.7	78	81	6	226	25	27	21	25	1.99
52789512--52789605	35	2.7	35	86	0	134	32	17	13	36	1.89
52793507--52793546	22	1.9	20	90	10	62	42	2	12	42	1.56
52796633--52796800	24	6.8	25	68	8	78	20	25	18	35	1.95
52798785--52798854	28	2.5	28	88	0	95	31	14	27	27	1.95
52802647--52802704	27	2.1	27	96	0	107	36	12	29	22	1.90
52805820--52805950	23	5.5	24	75	16	105	35	16	18	29	1.92
52810304--52810333	15	1.9	16	93	6	53	16	10	0	73	1.09
52812738--52812913	46	3.8	46	74	12	189	22	19	27	30	1.98
52812735--52812905	93	1.8	93	92	0	288	22	20	28	29	1.98
52814735--52814778	15	2.9	15	82	0	52	54	13	13	18	1.71
52815299--52815323	11	2.3	11	100	0	50	40	24	20	16	1.91
52825595--52825654	22	2.7	23	78	5	59	35	20	20	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52828200--52828356	43	3.7	41	75	9	147	26	15	23	34	1.94
52828187--52828354	85	2.0	84	83	3	212	27	14	23	35	1.93
52833718--52833768	24	2.1	25	81	3	59	23	29	17	29	1.97
52834191--52834236	15	2.9	17	78	12	53	47	0	19	32	1.50
52843219--52843403	40	4.7	40	84	2	248	19	29	14	36	1.92
52843219--52843431	79	2.7	79	84	3	250	20	30	14	35	1.92
52843296--52843394	20	5.0	20	67	10	69	23	31	13	32	1.93
52843217--52843431	40	5.4	39	81	5	218	20	29	14	34	1.93
52845507--52845617	29	3.9	29	74	8	102	27	31	13	27	1.94
52848939--52849167	50	4.8	46	79	10	223	26	29	17	27	1.97
52850973--52851030	24	2.5	23	83	10	73	13	15	3	67	1.36
52850988--52851036	24	2.0	24	100	0	98	12	16	0	71	1.14
52852236--52852354	50	2.3	52	87	5	163	31	17	13	37	1.89
52854174--52854209	16	2.2	16	90	9	56	72	0	0	27	0.85
52854158--52854201	22	2.0	23	86	13	65	70	2	0	27	0.99
52855213--52855277	29	2.2	31	79	17	77	50	1	1	46	1.20
52855873--52855951	37	2.1	38	86	6	108	44	10	0	45	1.37
52864683--52864767	20	4.4	19	76	10	75	63	2	1	32	1.15
52864690--52864766	39	1.9	39	82	7	93	61	2	1	35	1.18
52866107--52866183	25	3.1	25	72	10	77	28	27	16	27	1.97
52871269--52871398	30	4.4	29	81	0	116	29	13	20	36	1.90
52871389--52871478	29	3.1	29	83	3	110	26	18	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52874907--52875073	27	6.2	27	87	1	237	40	20	8	30	1.82
52874900--52875057	54	2.9	54	94	0	273	39	22	8	29	1.83
52874907--52875085	80	2.2	81	86	1	243	40	20	8	30	1.82
52874907--52875193	27	10.7	27	76	5	170	39	21	8	30	1.83
52875176--52875425	27	9.3	27	76	14	173	37	17	19	26	1.93
52875177--52875425	54	4.6	52	79	6	230	37	17	19	26	1.93
52875180--52875421	81	3.0	79	80	10	260	37	16	19	26	1.93
52875840--52876032	6	31.3	6	70	16	128	19	18	14	48	1.82
52875840--52876032	25	7.8	24	75	13	128	19	18	14	48	1.82
52875868--52875950	37	2.2	37	82	0	103	19	18	16	45	1.85
52875840--52876011	62	2.8	62	93	0	290	19	18	14	47	1.82
52875930--52876023	37	2.5	37	89	0	134	18	19	13	48	1.80
52877491--52877577	23	3.8	23	85	8	115	31	19	24	25	1.98
52881851--52881901	25	2.0	25	96	0	75	35	19	5	39	1.76
52885401--52885425	13	1.9	13	100	0	50	16	4	16	64	1.44
52886383--52886435	26	2.0	26	96	0	97	30	18	15	35	1.92
52887567--52887622	21	2.7	21	88	0	85	10	35	30	23	1.89
52903663--52903908	68	3.7	65	75	8	205	24	28	15	30	1.96
52909298--52909341	21	2.0	22	82	4	54	34	6	15	43	1.74
52913637--52913787	6	24.3	6	70	20	98	49	15	16	19	1.80
52913637--52913787	19	8.1	18	70	20	98	49	15	16	19	1.80
52913646--52913787	31	4.5	31	89	4	205	49	14	16	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52913621--52913787	62	2.7	62	87	5	223	49	14	16	19	1.79
52913936--52914024	27	3.3	27	81	6	99	38	19	23	19	1.93
52914182--52914246	22	3.0	22	82	8	87	35	23	21	20	1.96
52914630--52914788	52	3.0	52	66	8	133	34	22	16	26	1.95
52914630--52914841	105	2.0	105	95	0	379	32	22	17	27	1.96
52914777--52914952	27	6.6	27	87	0	237	25	22	18	32	1.97
52914953--52915452	27	18.5	27	77	6	232	32	9	19	39	1.83
52914953--52915452	54	9.3	54	73	4	276	32	9	19	39	1.83
52917396--52917534	6	22.3	6	66	22	65	48	14	16	20	1.80
52917405--52917505	25	3.8	25	78	14	103	48	13	17	19	1.81
52917407--52917534	31	4.3	30	78	14	140	49	14	16	20	1.80
52917683--52917771	27	3.3	26	82	6	97	38	21	22	17	1.94
52917930--52917994	22	3.0	22	80	8	78	33	23	23	20	1.97
52918421--52918618	27	7.5	26	81	1	189	24	21	19	34	1.96
52918447--52918618	27	6.4	27	83	1	204	24	21	19	34	1.97
52918439--52918618	53	3.4	54	82	3	247	23	21	20	34	1.97
52918421--52918623	106	1.9	106	92	0	343	25	21	18	34	1.96
52918630--52918688	27	2.2	27	81	6	66	30	8	18	42	1.80
52918648--52919127	27	17.9	27	74	7	151	31	8	21	38	1.82
52918622--52919118	54	9.3	53	75	8	269	31	8	20	39	1.83
52918838--52919118	81	3.5	80	78	8	275	30	8	21	39	1.83
52920538--52920569	13	2.3	15	89	10	50	56	6	18	18	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52921126--52921150	13	1.9	13	100	0	50	20	40	24	16	1.91
52925616--52925754	63	2.2	62	80	11	140	25	15	27	30	1.96
52925925--52925954	16	1.9	15	93	6	51	43	0	23	33	1.54
52927762--52927790	15	1.9	15	100	0	58	20	13	0	65	1.26
52931769--52931832	31	2.1	31	87	0	92	26	23	14	35	1.93
52932040--52932214	24	7.4	24	92	3	284	27	21	21	29	1.99
52932047--52932214	47	3.6	47	91	3	284	27	20	22	29	1.98
52932047--52932213	23	7.1	23	93	2	271	28	20	22	28	1.99
52932272--52932328	9	5.9	9	73	15	51	35	21	8	35	1.84
52932260--52932330	20	3.5	20	94	0	124	32	21	11	35	1.89
52932265--52932319	11	5.4	11	70	16	55	30	20	12	36	1.90
52942489--52942602	43	2.7	42	81	10	142	29	23	16	29	1.96
52946905--52946930	12	2.2	12	100	0	52	34	15	0	50	1.45
52946921--52946997	37	2.1	37	100	0	154	40	5	5	49	1.47
52948844--52948876	16	2.1	16	100	0	66	30	12	6	51	1.63
52949176--52949221	19	2.4	18	89	7	65	52	28	8	10	1.66
52950388--52950461	27	2.7	27	80	0	76	35	22	6	35	1.81
52950388--52950500	54	2.1	54	81	3	129	30	23	7	38	1.82
52950413--52950504	27	3.4	27	89	3	141	28	21	7	42	1.80
52950496--52950659	27	6.1	26	71	12	93	39	20	11	28	1.88
52950494--52950637	54	2.7	54	75	9	143	37	20	11	29	1.89
52950503--52950658	81	1.9	81	81	10	185	40	18	11	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52950536--52950716	54	3.3	54	81	8	172	41	19	8	30	1.81
52950615--52950722	27	3.9	27	71	13	85	41	18	8	31	1.80
52950767--52950851	27	3.1	27	86	3	109	35	24	22	17	1.95
52950784--52950863	27	2.9	27	90	1	115	32	22	25	20	1.98
52951584--52951644	10	5.9	10	77	11	61	36	11	19	32	1.88
52951584--52951644	21	2.9	20	82	4	77	36	11	19	32	1.88
52951584--52951636	11	5.0	11	79	6	65	35	13	20	30	1.91
52953217--52953313	37	2.7	36	82	7	126	44	13	18	23	1.85
52953616--52953707	45	2.0	45	95	0	166	31	14	14	40	1.85
52955091--52955157	33	2.0	34	85	2	91	28	26	20	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295