genome.fa.s2.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  157  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53346340--53346376	19	2.0	19	94	5	67	51	5	5	37	1.48
53349784--53349818	18	1.9	19	88	11	56	48	0	0	51	1.00
53352618--53352663	22	2.0	23	83	4	58	41	19	10	28	1.85
53354374--53354519	37	3.9	37	94	0	229	27	30	17	23	1.97
53354726--53354919	47	4.1	47	89	0	280	25	28	11	33	1.91
53357968--53358004	12	3.1	12	100	0	74	56	0	0	43	0.99
53357580--53358225	242	2.7	240	91	2	1066	39	18	8	32	1.82
53360561--53360807	56	4.4	56	89	1	370	33	23	12	29	1.92
53361319--53361386	29	2.4	28	81	13	77	27	20	4	47	1.69
53361325--53361386	28	2.2	27	81	16	72	27	19	3	50	1.63
53361936--53361960	13	1.9	13	100	0	50	40	24	4	32	1.73
53364642--53364696	27	2.0	27	96	0	101	38	20	10	30	1.87
53367870--53367903	18	1.9	17	94	5	59	52	14	0	32	1.42
53371433--53371465	16	1.9	18	88	11	52	39	15	15	30	1.88
53372821--53372946	63	2.0	63	96	0	234	35	4	17	42	1.70
53372832--53372963	63	2.1	63	91	2	212	34	3	18	43	1.68
53375487--53375521	11	3.2	11	95	0	61	37	2	25	34	1.71
53375865--53375897	16	2.1	16	94	0	57	24	27	0	48	1.51
53377743--53377852	29	3.8	29	85	0	121	27	30	15	27	1.96
53377742--53377852	58	1.9	58	83	0	141	27	29	15	27	1.96
53378076--53378110	16	2.2	16	89	0	52	11	17	17	54	1.71
53379682--53379722	18	2.2	19	83	12	50	14	41	26	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53382276--53382399	29	4.3	29	78	5	108	28	29	12	29	1.93
53385300--53385331	17	1.9	16	93	6	55	46	12	21	18	1.82
53392016--53392063	24	2.0	25	87	4	71	16	27	22	33	1.96
53394135--53394319	40	4.6	40	93	4	293	27	27	23	22	2.00
53396927--53397151	40	5.6	39	90	5	292	25	21	27	26	1.99
53396940--53397184	79	3.1	78	84	7	282	26	20	26	26	1.99
53399315--53399497	77	2.3	81	83	8	234	24	22	27	25	2.00
53399315--53399497	40	4.7	40	84	8	225	24	22	27	25	2.00
53407255--53407478	40	5.7	40	87	6	289	25	21	27	25	2.00
53422680--53422844	43	3.9	42	82	8	199	32	26	17	23	1.97
53428291--53428499	53	3.9	54	73	4	170	21	24	17	36	1.94
53437254--53437384	47	2.8	47	82	2	147	33	27	16	22	1.95
53444773--53444903	47	2.8	47	83	2	165	34	26	16	22	1.95
53452263--53452336	24	3.0	24	75	13	78	32	21	24	21	1.98
53454403--53454427	12	2.1	12	100	0	50	48	0	16	36	1.46
53457660--53457685	12	2.2	12	100	0	52	50	7	0	42	1.31
53458131--53458228	27	3.5	28	90	2	135	26	13	28	31	1.94
53458159--53458241	27	3.0	27	87	5	96	30	12	25	32	1.92
53465936--53465961	12	2.2	12	100	0	52	50	7	0	42	1.31
53466406--53466503	27	3.5	28	90	2	135	26	13	28	31	1.94
53466434--53466516	27	3.0	27	87	5	96	30	12	25	32	1.92
53530074--53530114	20	2.0	20	95	0	73	39	14	17	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53530284--53530414	48	2.8	48	87	3	158	22	14	28	34	1.94
53532811--53532849	10	3.8	10	90	6	60	33	17	15	33	1.92
53532810--53532849	21	1.9	21	94	0	71	35	17	15	32	1.91
53534194--53534238	22	2.0	22	95	0	81	31	20	26	22	1.98
53538228--53538371	27	5.3	27	88	0	180	29	25	5	39	1.78
53538403--53538579	27	6.6	28	80	8	190	42	20	7	29	1.79
53538370--53538555	54	3.5	54	85	3	189	39	19	10	30	1.85
53538557--53538642	27	3.1	27	80	11	102	39	15	9	36	1.79
53538683--53538756	27	2.7	27	76	12	71	37	20	20	21	1.94
53538696--53538760	27	2.4	27	82	5	78	35	18	24	21	1.96
53539073--53539113	20	2.0	22	85	9	59	24	17	36	21	1.94
53539570--53539639	25	2.8	25	95	0	122	28	25	21	24	1.99
53539570--53539664	25	3.8	25	86	6	113	29	24	22	24	1.99
53539859--53540035	31	5.7	31	89	0	266	30	15	23	29	1.96
53541642--53541715	27	2.7	27	76	12	71	37	20	20	21	1.94
53541655--53541719	27	2.4	27	82	5	78	35	18	24	21	1.96
53542032--53542072	20	2.0	22	85	9	59	24	17	36	21	1.94
53542528--53542604	25	3.1	25	86	1	102	31	20	20	27	1.98
53542527--53542622	25	3.9	24	81	9	95	28	21	22	27	1.99
53542528--53542622	50	1.9	50	80	8	113	28	22	23	26	1.99
53542817--53542931	31	3.7	31	89	1	178	27	14	26	31	1.95
53546219--53546263	22	2.0	22	100	0	90	22	4	26	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53552516--53552573	25	2.3	26	85	8	75	3	20	1	74	1.06
53557316--53557375	16	3.6	16	68	18	50	43	3	1	51	1.28
53563410--53563711	40	7.6	40	90	1	446	30	26	20	22	1.98
53571837--53571904	29	2.4	28	76	16	68	45	4	0	50	1.22
53571837--53571899	14	4.4	14	76	18	58	46	4	0	49	1.23
53577424--53577499	40	1.9	40	91	5	127	31	25	15	27	1.96
53577674--53577822	72	2.1	72	98	0	289	32	23	2	41	1.68
53577983--53578047	29	2.3	29	84	5	80	32	24	0	43	1.55
53589461--53589572	55	2.0	55	100	0	224	29	10	16	43	1.81
53590573--53590650	38	2.0	39	95	2	140	32	12	10	44	1.76
53605424--53605586	87	1.9	87	86	1	236	36	17	22	23	1.94
53605446--53605639	87	2.2	87	85	0	253	36	16	22	25	1.94
53606921--53606962	15	2.8	15	92	0	66	57	4	0	38	1.20
53612058--53612286	48	4.8	48	78	5	167	23	30	17	28	1.97
53612058--53612234	96	1.9	95	82	10	227	23	29	16	29	1.96
53614590--53614756	43	3.9	42	70	12	115	37	25	14	22	1.93
53615034--53615100	26	2.5	26	92	7	109	43	11	0	44	1.41
53623607--53624105	47	10.4	47	90	2	701	32	8	29	29	1.87
53624224--53624302	37	2.1	37	90	0	122	24	18	31	25	1.98
53633135--53633225	45	2.0	45	93	0	155	26	26	13	34	1.93
53639032--53639107	37	2.1	37	83	14	95	43	23	7	25	1.80
53657162--53657202	18	2.3	18	91	0	64	46	12	9	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53657162--53657220	9	6.6	9	75	7	57	45	16	8	28	1.77
53657241--53657281	6	6.5	6	83	10	55	19	0	2	78	0.87
53657307--53657355	5	9.2	5	82	12	62	4	2	53	40	1.32
53662543--53662654	27	4.2	26	87	5	134	37	23	22	16	1.94
53662543--53662654	54	2.1	54	86	3	154	37	23	22	16	1.94
53664268--53664376	26	4.2	26	96	1	184	36	24	4	33	1.76
53668346--53668460	27	4.3	26	84	5	131	38	23	21	16	1.93
53668346--53668460	54	2.1	54	85	3	151	38	23	21	16	1.93
53670070--53670179	26	4.2	26	95	2	177	36	24	4	34	1.76
53673564--53673694	45	3.0	45	86	4	169	27	29	19	23	1.99
53681584--53681712	45	2.9	44	81	4	152	27	27	21	24	1.99
53684424--53684453	13	2.2	14	94	5	53	26	13	26	33	1.93
53685399--53685504	53	2.0	53	100	0	212	50	11	7	30	1.65
53688027--53688079	24	2.2	24	86	0	70	20	16	16	45	1.86
53689105--53689142	17	2.0	20	85	14	55	31	13	5	50	1.63
53691419--53691477	22	2.7	22	97	0	109	27	8	6	57	1.53
53693664--53693770	56	1.9	56	100	0	214	31	3	21	42	1.70
53701563--53701756	48	4.0	48	84	0	217	26	16	26	29	1.97
53701589--53701776	48	3.9	48	83	1	135	28	16	25	29	1.97
53705009--53705119	45	2.5	45	92	0	177	34	24	15	26	1.95
53706219--53706247	14	2.0	15	93	6	51	51	20	0	27	1.47
53710168--53710249	41	2.0	41	92	0	137	28	34	13	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53713105--53713147	20	2.3	19	80	11	54	53	4	2	39	1.34
53713550--53713580	9	3.3	9	95	4	53	41	3	0	54	1.16
53716728--53716795	29	2.3	29	85	5	93	27	30	13	27	1.94
53716896--53716974	29	2.7	30	82	13	110	29	30	15	25	1.96
53716617--53716943	173	1.9	174	91	1	541	31	24	14	30	1.94
53728838--53728880	18	2.4	18	80	7	52	34	2	4	58	1.32
53734086--53734128	22	2.0	22	85	0	59	32	23	27	16	1.96
53742380--53742429	15	3.4	15	72	5	57	26	22	6	46	1.74
53745181--53745331	36	4.1	37	93	2	252	25	33	18	21	1.96
53745181--53745331	73	2.1	73	92	2	250	25	33	18	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295