genome.fa.s13.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  103  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32929876--32930437	47	11.7	47	94	1	874	29	28	8	33	1.87
32929876--32930416	49	11.3	49	93	3	899	29	28	8	33	1.87
32938721--32938892	46	3.7	45	78	6	166	25	27	18	28	1.98
32938769--32938892	47	2.7	45	84	12	162	25	27	17	29	1.98
32938528--32938889	48	7.7	47	70	13	201	24	29	19	27	1.98
32940327--32940381	23	2.4	23	85	11	69	32	3	1	61	1.24
32942342--32942399	10	5.5	11	75	10	50	13	1	12	72	1.20
32943193--32943248	18	3.5	15	81	18	60	37	10	16	35	1.83
32943191--32943269	35	2.2	37	86	13	121	37	10	16	35	1.82
32943191--32943262	19	3.9	19	89	10	123	37	11	15	36	1.83
32943191--32943285	17	4.8	22	84	12	79	36	9	15	37	1.80
32943553--32943586	18	1.9	17	88	5	50	29	0	0	70	0.87
32949233--32949301	34	2.1	34	97	2	131	39	11	37	11	1.78
32951698--32951965	44	6.0	45	77	9	260	32	16	27	23	1.96
32951767--32951965	89	2.2	89	84	4	267	33	15	28	22	1.95
32952314--32952369	18	3.5	15	81	18	60	37	10	16	35	1.83
32952312--32952390	35	2.2	37	86	13	121	37	10	16	35	1.82
32952312--32952383	19	3.9	19	89	10	123	37	11	15	36	1.83
32952312--32952406	17	4.8	22	84	12	79	36	9	15	37	1.80
32956357--32956437	40	2.0	40	100	0	162	29	12	17	40	1.86
32956854--32956902	24	2.0	24	96	0	89	36	12	38	12	1.80
32959893--32960068	46	3.8	46	79	4	192	23	19	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32959889--32960059	93	1.8	93	91	0	279	23	19	28	28	1.98
32964192--32964486	78	3.8	78	85	1	412	33	18	22	24	1.97
32964426--32964654	45	5.1	45	71	10	189	31	15	25	26	1.96
32965000--32965073	19	3.9	19	96	3	141	36	10	16	36	1.83
32965000--32965080	37	2.2	38	91	8	141	37	9	17	35	1.83
32965000--32965096	19	4.8	22	89	7	97	36	9	16	38	1.81
32965671--32965784	57	2.0	57	96	0	210	25	12	24	37	1.90
32965931--32965968	18	2.1	18	100	0	76	15	31	13	39	1.86
32969492--32969594	46	2.2	48	87	3	147	35	15	22	26	1.94
32969504--32969611	48	2.3	46	85	3	144	34	16	19	29	1.94
32972717--32972841	62	2.0	62	95	3	225	27	9	18	44	1.80
32973613--32973749	67	2.0	67	95	0	247	33	17	9	39	1.82
32985443--32985470	3	9.3	3	100	0	56	67	0	0	32	0.91
32986117--32986170	22	2.5	22	84	3	74	53	1	1	42	1.22
32986115--32986176	18	3.5	17	82	10	63	53	1	1	43	1.20
32987684--32987738	24	2.3	24	90	0	83	40	14	23	21	1.90
32989615--32989668	24	2.3	23	87	3	72	25	3	9	61	1.43
32995069--32995102	3	11.3	3	93	0	59	0	35	2	61	1.11
33000166--33000210	22	2.0	22	100	0	90	22	13	15	48	1.79
33004723--33004898	46	3.8	45	81	10	212	21	21	29	28	1.98
33004719--33004890	93	1.8	93	94	0	308	20	21	30	27	1.98
33007836--33007915	15	5.4	15	75	12	76	11	17	12	58	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33013205--33013257	27	2.0	27	84	0	70	50	9	1	37	1.46
33020786--33020826	5	8.0	5	89	5	64	75	0	0	24	0.80
33023445--33023485	20	2.0	21	85	4	57	60	2	0	36	1.10
33041791--33041902	47	2.4	47	82	5	138	36	22	15	25	1.93
33042267--33042352	21	4.1	21	86	0	118	36	26	20	16	1.94
33042721--33042778	15	3.8	15	88	2	89	51	12	0	36	1.39
33045499--33045562	31	2.1	30	82	5	76	48	12	4	34	1.62
33045639--33045696	30	1.9	30	82	6	73	46	3	3	46	1.36
33055696--33055738	3	14.3	3	100	0	86	67	0	32	0	0.91
33059498--33059551	6	9.5	6	97	2	87	83	0	0	16	0.65
33064144--33064184	20	2.1	19	95	4	73	73	0	7	19	1.07
33065544--33065628	27	3.3	26	75	18	72	57	1	9	31	1.38
33065566--33065628	27	2.4	27	81	2	74	58	1	9	30	1.39
33070025--33070206	46	4.0	46	86	1	231	21	23	14	40	1.90
33073502--33073539	18	2.1	18	100	0	76	39	5	10	44	1.61
33078015--33078048	18	1.9	18	88	5	52	23	17	0	58	1.38
33086686--33086747	16	3.8	16	74	14	54	37	11	1	50	1.48
33094181--33094228	24	2.0	24	84	8	62	22	8	39	29	1.83
33108304--33108443	39	3.6	39	87	0	208	13	23	23	39	1.90
33118017--33118050	17	1.9	18	88	5	52	29	11	2	55	1.50
33121058--33121153	4	23.8	4	73	21	53	21	4	0	73	0.99
33121035--33121144	27	3.9	26	73	19	96	20	3	0	76	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33121053--33121154	15	6.8	15	74	15	86	21	3	0	74	0.98
33123882--33123915	17	1.9	18	88	5	52	29	11	5	52	1.61
33124477--33124677	68	3.2	61	75	17	171	50	3	3	41	1.38
33142703--33142734	16	2.0	16	93	0	55	46	6	6	40	1.54
33148042--33148072	16	1.9	16	93	0	53	25	16	16	41	1.88
33148911--33148943	14	2.3	15	94	5	59	27	9	6	57	1.53
33149027--33149064	18	2.1	19	85	5	51	15	5	18	60	1.53
33150117--33150184	21	3.2	21	75	4	66	47	7	22	23	1.76
33151656--33151685	6	5.0	6	100	0	60	50	0	0	50	1.00
33157414--33157521	26	4.2	26	93	0	189	36	24	7	32	1.83
33159736--33159850	18	6.3	18	74	4	97	40	16	8	34	1.79
33159746--33159853	36	3.0	36	80	1	110	38	15	8	37	1.78
33160043--33160179	53	2.4	58	78	20	164	43	20	20	16	1.88
33160049--33160169	53	2.3	53	87	11	185	42	21	19	15	1.88
33160341--33160392	16	3.4	16	82	15	65	32	11	0	55	1.36
33161153--33161199	22	2.0	22	84	8	58	29	14	8	46	1.74
33161639--33161669	14	2.2	14	100	0	62	48	0	6	45	1.28
33164714--33164738	13	1.9	13	100	0	50	92	8	0	0	0.40
33165977--33166027	22	2.4	22	77	9	52	35	1	11	50	1.50
33179266--33179295	15	1.9	16	93	6	53	16	0	3	80	0.85
33179899--33179951	21	2.5	21	84	0	70	22	28	26	22	1.99
33180616--33180654	21	1.9	20	84	5	51	15	10	23	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33181159--33181197	12	3.1	12	82	13	51	46	0	0	53	1.00
33181439--33181472	9	3.7	9	88	7	50	38	0	2	58	1.13
33186179--33186224	21	2.2	21	88	0	65	8	30	39	21	1.84
33186606--33186644	21	1.9	20	85	15	53	17	10	20	51	1.74
33187426--33187468	22	2.0	22	95	0	77	9	20	39	30	1.84
33187429--33187476	22	2.2	22	88	0	69	10	27	37	25	1.88
33190001--33190060	30	2.0	30	93	0	102	20	25	15	40	1.90
33194338--33194469	40	3.3	40	86	2	176	26	28	21	23	1.99
33194454--33194531	40	1.9	41	82	10	97	26	28	21	23	1.99
33202211--33202473	40	6.6	40	87	3	309	26	28	20	23	1.99
33212288--33212423	48	2.9	48	84	7	172	30	13	25	30	1.94
33212168--33212407	46	5.0	47	76	9	189	29	15	24	30	1.96
33212379--33212493	42	2.7	43	79	4	144	31	12	26	29	1.92
33217001--33217056	22	2.5	22	91	0	85	16	26	32	25	1.96
33218904--33219008	49	2.1	49	96	1	192	6	23	6	62	1.43
33222412--33222502	45	2.0	46	93	2	157	36	15	26	21	1.93
33224565--33224651	44	2.0	44	95	0	156	31	18	17	33	1.94
33234183--33234214	15	2.1	15	94	0	55	65	0	0	34	0.93
33238738--33238798	32	1.9	32	96	0	113	24	27	9	37	1.87
33241306--33241368	3	21.3	3	88	3	92	36	1	1	60	1.16
33245685--33245776	44	2.1	44	85	4	123	22	19	22	34	1.96
33245723--33245831	47	2.2	49	84	9	134	22	17	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33248248--33248328	25	3.2	25	85	3	110	20	24	23	30	1.99
33248490--33248515	13	2.0	13	100	0	52	30	23	15	30	1.95
33249003--33249099	40	2.5	38	76	12	115	34	35	13	17	1.89
33251099--33251129	13	2.4	13	94	0	53	19	16	12	51	1.76
33255766--33255790	13	1.9	13	100	0	50	32	20	16	32	1.94
33258482--33258542	29	2.1	30	93	3	106	27	22	0	49	1.50
33262040--33262961	459	2.0	458	92	1	1551	26	13	30	29	1.94
33263029--33263055	14	1.9	14	100	0	54	7	14	18	59	1.58
33266026--33266099	27	2.7	27	80	0	67	31	21	10	36	1.88
33266051--33266135	27	3.1	27	89	0	125	28	21	8	42	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310