genome.fa.s13.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  155  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50964024--50964311	27	10.7	27	82	3	292	27	15	18	38	1.91
50964039--50964338	81	3.7	80	80	7	336	27	16	18	38	1.91
50972592--50972742	27	5.6	26	81	4	140	26	16	27	29	1.97
50972592--50972742	82	1.9	81	84	4	205	26	16	27	29	1.97
50972591--50972768	27	6.6	27	80	5	126	26	15	27	30	1.96
50974763--50975040	27	10.7	27	79	8	240	26	16	18	38	1.92
50974763--50975011	54	4.8	54	80	9	270	26	16	18	37	1.92
50974912--50975003	22	3.9	23	83	11	116	30	19	20	29	1.97
50984402--50984625	40	5.7	40	84	7	246	24	22	28	25	2.00
50984402--50984625	79	2.8	80	83	8	260	24	22	28	25	2.00
50984455--50984658	79	2.6	79	83	5	209	25	21	27	25	1.99
50990566--50990621	27	2.1	27	100	0	112	48	21	19	10	1.79
50992484--50992706	40	5.6	40	81	7	247	26	27	21	24	1.99
51000714--51000937	40	5.6	40	85	4	263	26	26	22	24	2.00
51000714--51000937	83	2.8	79	84	2	268	26	26	22	24	2.00
51008785--51008976	50	3.9	49	82	5	208	25	18	27	28	1.98
51015409--51015634	50	4.5	49	75	11	190	23	18	26	31	1.98
51017744--51017769	13	2.0	13	100	0	52	7	0	30	61	1.24
51021867--51021958	48	1.9	48	93	0	157	32	14	22	30	1.93
51021920--51022061	38	3.5	37	71	19	131	30	14	24	30	1.94
51021837--51022081	86	2.9	86	86	0	330	30	15	24	29	1.96
51022007--51022083	38	2.0	38	84	0	100	28	15	27	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51025314--51025353	15	2.7	15	84	0	53	17	17	15	50	1.79
51028071--51028269	38	5.0	38	78	10	209	28	16	24	30	1.96
51029437--51029479	19	2.3	19	100	0	86	16	25	20	37	1.93
51034667--51034698	16	2.0	16	93	0	55	25	3	12	59	1.48
51035702--51035770	27	2.5	28	80	15	74	34	23	24	17	1.96
51035877--51035939	26	2.3	26	83	5	72	30	11	25	33	1.90
51052533--51052666	27	5.0	26	84	4	142	36	22	22	18	1.95
51052825--51052889	22	3.0	21	76	13	69	33	23	23	20	1.97
51053277--51053453	27	6.6	27	84	0	219	24	22	19	32	1.97
51054099--51054297	6	32.3	6	73	17	151	48	14	18	19	1.81
51054099--51054297	25	8.1	24	77	13	151	48	14	18	19	1.81
51054126--51054297	31	5.6	30	73	14	154	47	14	18	19	1.82
51054120--51054297	37	4.8	37	78	12	131	47	14	18	19	1.82
51054131--51054296	62	2.7	62	91	0	260	47	15	18	18	1.83
51054438--51054498	31	1.9	32	86	3	88	36	16	24	22	1.94
51054514--51054565	27	2.0	26	84	3	68	34	21	26	17	1.95
51054810--51055034	27	8.3	27	79	7	199	24	19	20	36	1.95
51054810--51055034	54	4.2	54	80	4	247	24	19	20	36	1.95
51054824--51055032	81	2.6	81	88	0	301	24	18	20	35	1.95
51055082--51055141	27	2.2	27	90	0	93	31	8	16	43	1.78
51055144--51055438	27	10.9	27	81	1	358	31	9	19	39	1.83
51055124--51055438	54	5.8	54	90	0	479	31	9	19	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51056308--51056409	27	3.8	27	90	0	150	28	14	17	39	1.89
51056393--51056465	27	2.7	26	72	8	65	30	5	24	39	1.78
51058543--51058631	43	2.1	42	81	6	99	30	25	15	28	1.96
51060834--51060863	15	2.0	15	93	0	51	13	0	30	56	1.37
51065247--51065560	81	3.9	81	82	2	335	38	22	8	29	1.84
51065247--51065561	27	11.7	27	79	4	278	38	22	8	29	1.84
51065574--51065697	27	4.6	27	82	3	135	33	17	23	25	1.96
51066124--51066188	22	3.0	22	77	8	60	21	23	21	33	1.97
51066354--51066448	27	3.5	27	85	8	113	20	23	20	36	1.95
51066585--51066694	31	3.5	31	88	1	139	20	17	12	50	1.78
51066608--51066694	6	14.2	6	73	13	61	20	18	13	47	1.83
51066648--51066704	12	4.7	12	77	16	55	22	19	12	45	1.83
51067362--51067438	37	2.1	37	100	0	154	35	16	5	42	1.71
51067363--51067425	21	3.2	21	61	21	55	34	14	4	46	1.66
51072076--51072221	50	3.0	50	86	2	197	25	27	20	26	1.99
51072512--51072566	27	2.0	27	92	0	92	20	25	14	40	1.90
51076964--51077114	28	5.4	28	88	1	205	25	12	27	33	1.92
51085171--51085240	27	2.5	28	88	2	106	31	28	12	27	1.93
51089666--51089708	19	2.3	18	84	11	59	32	16	0	51	1.45
51089788--51089879	44	2.1	45	87	2	132	31	23	19	25	1.98
51089885--51090069	51	3.7	50	76	5	176	30	27	17	24	1.97
51089883--51090067	101	1.8	101	87	5	275	30	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51092710--51092832	28	4.4	28	90	2	176	33	28	12	26	1.92
51093279--51093304	12	2.2	12	100	0	52	42	0	7	50	1.31
51095254--51095568	41	7.7	41	88	0	450	23	28	20	27	1.99
51095258--51095568	82	3.8	82	93	0	496	22	28	20	28	1.99
51097762--51097878	59	2.0	59	98	0	225	35	17	3	42	1.67
51099147--51099303	79	2.0	79	92	2	262	39	17	5	37	1.72
51099294--51099916	312	2.0	312	96	1	1142	26	18	13	41	1.87
51107871--51107910	19	2.1	19	90	0	62	27	0	5	67	1.11
51111601--51111771	93	1.8	93	92	0	288	28	28	19	22	1.98
51111592--51111767	46	3.8	46	73	15	164	29	28	19	22	1.98
51113206--51113243	17	2.2	18	90	4	60	55	10	13	21	1.67
51114884--51114924	21	2.0	21	90	9	66	26	39	12	21	1.89
51115631--51115690	30	2.0	30	96	0	111	40	21	13	25	1.89
51120916--51121064	55	2.8	53	82	6	183	34	19	26	19	1.96
51120933--51121076	53	2.7	53	84	2	180	35	18	25	20	1.95
51122023--51122048	13	2.0	13	100	0	52	38	15	7	38	1.76
51124241--51124284	22	2.0	22	86	4	61	34	0	2	63	1.07
51124241--51124290	24	2.1	23	85	3	64	30	0	4	66	1.10
51127891--51127975	37	2.2	36	82	12	100	25	7	1	65	1.25
51127910--51128054	3	47.3	3	73	6	85	27	6	3	62	1.37
51127983--51128050	19	3.5	19	71	13	57	25	8	2	63	1.38
51130055--51130098	23	1.9	23	81	9	54	59	0	4	36	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51136259--51136334	40	1.9	40	88	0	116	15	11	34	38	1.84
51153857--51154048	44	4.4	44	85	1	242	38	21	13	26	1.90
51153857--51154257	88	4.4	88	74	12	297	35	19	15	28	1.93
51154088--51154213	51	2.6	51	84	8	167	32	18	19	30	1.95
51154138--51154262	44	2.8	44	84	4	137	32	17	18	31	1.94
51157582--51157652	30	2.3	31	92	2	117	29	15	9	45	1.78
51158024--51159767	921	1.9	928	87	3	2587	24	15	18	41	1.89
51160288--51160358	37	1.9	37	97	0	133	23	18	14	43	1.86
51167459--51167512	24	2.3	24	81	15	60	59	0	1	38	1.08
51173420--51173472	26	2.0	26	82	7	63	26	15	20	37	1.92
51174957--51175014	26	2.2	26	96	0	107	36	25	5	32	1.78
51179372--51179616	41	6.0	41	90	4	340	29	20	26	24	1.99
51180170--51180296	7	17.9	7	70	15	57	18	2	37	41	1.63
51180225--51180292	29	2.3	29	87	0	100	19	1	41	38	1.60
51180321--51180366	14	3.4	14	71	17	51	26	2	32	39	1.68
51180536--51180640	28	3.9	28	69	21	73	30	0	27	40	1.63
51180561--51180601	21	2.0	21	95	0	73	24	0	31	43	1.54
51180509--51180622	49	2.2	51	87	6	160	29	0	28	40	1.63
51180355--51180825	256	1.9	252	93	3	811	27	2	26	43	1.67
51180717--51180775	28	2.1	28	84	6	75	15	1	33	49	1.55
51180760--51180803	21	2.0	22	86	4	63	25	4	27	43	1.74
51180772--51180843	29	2.5	30	80	10	89	27	2	27	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51182202--51182324	44	2.7	45	81	5	131	34	14	22	28	1.94
51183909--51183938	6	5.0	6	100	0	60	0	66	0	33	0.92
51185692--51185721	14	2.2	13	94	5	51	50	0	13	36	1.42
51185792--51186160	183	2.0	183	97	0	702	26	15	14	43	1.85
51187051--51187155	53	2.1	49	82	7	120	44	6	3	44	1.48
51189754--51189797	19	2.3	19	96	0	79	34	13	18	34	1.90
51193825--51194008	40	4.6	39	87	3	165	25	21	28	25	1.99
51193839--51194008	80	2.1	79	83	1	205	24	21	28	25	1.99
51193865--51194043	79	2.3	80	81	1	200	26	20	28	24	1.99
51196179--51196260	44	1.9	42	92	7	139	34	18	21	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310