Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  102  of  310  ( 37082 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32667968--32668157
105
1.8
105
82
0
245
37
16
19
26
1.93
32669070--32669101
15
2.1
15
94
0
55
65
0
6
28
1.16
32669686--32669806
37
3.3
37
85
6
147
14
48
12
23
1.78
32671889--32671925
14
2.5
15
91
8
67
54
0
10
35
1.36
32673367--32673402
17
2.1
17
100
0
72
52
5
5
36
1.48
32673435--32673799
16
23.0
16
68
18
158
46
15
3
35
1.62
32673443--32673593
80
1.9
78
91
2
248
44
15
3
36
1.64
32673517--32673674
46
3.3
46
84
6
208
44
15
4
34
1.67
32673579--32673704
30
4.5
30
73
17
126
46
15
3
35
1.62
32673655--32673768
46
2.4
47
91
4
185
46
15
1
35
1.57
32673431--32673804
127
3.0
126
84
8
524
45
15
2
35
1.61
32673422--32673807
9
43.2
9
67
18
139
46
15
2
35
1.61
32678861--32678889
14
2.1
14
93
6
51
34
0
10
55
1.34
32679299--32679353
21
2.6
21
85
0
74
29
16
50
3
1.62
32679310--32679364
21
2.6
21
85
5
58
27
18
50
3
1.63
32679595--32679660
31
2.1
31
85
0
87
15
10
22
51
1.73
32683328--32683367
19
2.1
19
100
0
80
35
37
10
17
1.83
32694301--32694346
3
15.3
3
90
0
74
65
2
2
30
1.16
32694581--32694625
16
2.8
16
79
0
54
68
0
4
26
1.08
32697218--32697266
22
2.2
20
77
19
53
51
26
4
18
1.64
32697997--32698146
43
3.5
42
84
7
185
30
26
17
26
1.97
32699541--32699565
7
3.6
7
100
0
50
44
0
0
56
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32700066--32700177
17
6.3
18
82
15
85
36
13
12
37
1.82
32700074--32700180
35
3.0
35
94
4
178
37
12
14
36
1.83
32700082--32700180
18
5.6
18
89
4
148
37
13
13
36
1.83
32705881--32705921
14
3.1
14
86
6
59
85
0
14
0
0.60
32705869--32705929
22
2.9
21
90
9
90
83
0
16
0
0.64
32705870--32705910
11
3.7
11
87
12
66
85
0
14
0
0.60
32705890--32705928
14
2.7
14
88
4
60
82
0
17
0
0.68
32706807--32706986
44
4.1
44
73
11
170
30
16
25
28
1.96
32706978--32707320
119
2.9
119
97
0
641
33
16
19
30
1.94
32707257--32707863
83
7.2
83
95
1
1016
32
20
19
27
1.97
32709032--32709060
4
7.2
4
100
0
58
51
0
0
48
1.00
32709281--32709323
20
2.2
20
91
0
68
27
9
9
53
1.63
32710206--32710293
20
4.4
20
71
1
70
35
13
7
43
1.74
32710217--32710293
40
1.9
40
83
0
100
36
15
7
40
1.76
32710317--32710380
20
3.2
21
76
10
71
56
18
0
25
1.42
32710324--32710380
19
2.9
19
77
12
62
56
17
0
26
1.41
32719009--32719038
15
2.0
15
100
0
60
40
6
20
33
1.78
32720855--32720888
18
1.9
18
88
5
52
23
29
35
11
1.90
32723836--32723873
5
7.4
5
88
5
58
15
2
0
81
0.80
32730584--32730616
5
6.8
5
96
3
59
84
0
0
15
0.61
32741325--32741367
7
6.1
7
83
0
50
46
2
25
25
1.65
32741355--32741478
7
17.9
7
77
11
112
43
0
25
29
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32741342--32741486
14
10.6
14
75
12
88
44
0
25
29
1.59
32754920--32755111
94
2.1
94
92
3
316
34
20
20
23
1.96
32754928--32755209
94
3.1
91
79
11
255
31
19
21
26
1.98
32755013--32755499
220
2.2
220
91
1
778
31
18
23
27
1.97
32757382--32757414
15
2.2
15
89
10
50
33
0
0
66
0.92
32757403--32757447
21
2.3
21
85
11
60
33
2
2
62
1.20
32758460--32758512
26
2.0
26
82
7
63
26
15
20
37
1.92
32759985--32760042
26
2.2
26
93
0
98
36
24
5
34
1.78
32770226--32770265
18
2.2
18
86
0
53
17
20
15
47
1.83
32773771--32773808
20
2.0
20
89
5
60
39
5
0
55
1.23
32774337--32774383
19
2.5
20
72
10
53
65
0
0
34
0.93
32774397--32774446
20
2.4
20
80
6
64
62
2
2
34
1.18
32777885--32777933
26
2.0
26
88
8
75
34
0
4
61
1.15
32779538--32779894
118
3.0
118
99
0
707
47
8
9
34
1.67
32779948--32780053
49
2.1
50
81
15
121
50
1
28
19
1.59
32786665--32786721
28
2.0
28
96
0
105
28
22
22
26
1.99
32787734--32787814
8
9.2
8
71
17
54
69
1
2
27
1.09
32788227--32788416
95
2.0
94
85
3
256
36
11
21
30
1.88
32790976--32791274
146
2.0
146
93
0
508
36
17
9
37
1.81
32792104--32792138
6
5.8
6
93
0
61
51
17
17
14
1.77
32792103--32792162
12
5.0
12
81
0
57
41
15
16
26
1.88
32793982--32794022
20
2.0
20
100
0
82
46
9
4
39
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32801298--32801454
78
2.0
78
97
0
296
56
8
16
19
1.65
32810390--32810421
4
7.8
4
93
6
55
78
0
0
21
0.76
32812019--32812048
15
2.1
15
93
6
53
70
10
6
13
1.34
32816139--32816309
43
4.0
43
85
1
218
22
30
20
26
1.98
32819769--32819827
29
2.0
29
96
0
109
33
23
16
25
1.96
32822876--32822989
39
2.9
39
92
0
183
23
21
28
26
1.99
32825873--32826016
43
3.3
43
88
0
216
22
29
21
25
1.99
32829629--32829723
17
5.3
19
87
9
146
36
10
15
36
1.82
32829637--32829725
35
2.5
35
96
1
160
35
11
15
37
1.84
32829734--32829832
49
2.0
49
90
0
153
28
20
27
24
1.99
32831354--32831537
67
2.8
64
75
13
180
28
17
30
22
1.97
32838854--32838952
1
99.0
1
71
0
54
83
0
16
0
0.64
32838855--32838952
23
4.2
24
79
16
100
83
0
16
0
0.64
32838855--32838952
32
3.2
31
83
15
123
83
0
16
0
0.64
32838855--32838952
31
3.2
32
86
12
134
83
0
16
0
0.64
32839922--32840081
82
2.0
80
88
3
241
29
23
22
24
1.99
32839882--32840081
79
2.4
79
85
6
256
29
23
22
25
1.99
32840086--32840462
207
1.8
207
94
0
673
30
17
21
29
1.97
32840918--32841581
205
3.2
205
91
1
1071
29
17
23
29
1.97
32841280--32841456
87
2.0
88
81
5
207
31
14
23
31
1.94
32842254--32842344
19
4.9
19
85
8
125
37
9
15
37
1.81
32842275--32842330
18
3.5
15
81
18
60
37
10
16
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32842262--32842351
35
2.5
37
85
10
125
38
10
15
35
1.81
32852514--32852543
4
7.5
4
100
0
60
76
0
0
23
0.78
32856535--32856647
42
2.7
42
83
5
156
28
15
25
30
1.96
32866457--32866629
46
3.7
46
76
11
183
22
20
26
30
1.99
32866854--32866891
19
2.0
20
85
15
53
36
0
23
39
1.55
32874135--32874210
40
1.9
40
94
0
134
32
26
22
18
1.97
32874799--32874838
13
3.2
13
85
3
55
22
2
0
75
0.93
32874831--32874860
11
2.8
11
95
5
53
16
13
0
70
1.18
32879626--32879814
40
4.7
40
86
5
231
25
26
22
25
2.00
32886301--32886343
21
2.0
22
86
13
63
34
0
2
62
1.08
32886384--32886414
13
2.3
14
94
5
55
41
0
6
51
1.27
32886496--32886527
12
2.7
12
95
0
55
37
0
0
62
0.95
32886543--32886663
26
4.7
24
73
16
82
33
2
6
57
1.38
32886675--32886717
21
2.1
20
86
4
59
34
11
4
48
1.60
32893979--32894018
20
2.0
20
100
0
80
40
10
10
40
1.72
32894653--32894693
21
2.0
21
85
9
57
58
9
9
21
1.59
32894954--32894996
17
2.4
18
84
7
52
62
0
2
34
1.08
32894932--32895079
20
7.5
19
68
22
65
62
2
3
32
1.23
32896539--32896889
83
4.2
83
91
0
540
27
20
18
33
1.96
32896856--32897179
166
2.0
166
95
1
587
31
19
15
33
1.93
32896974--32897064
47
2.0
46
97
2
173
31
20
13
34
1.91
32897022--32897332
119
2.6
119
94
1
534
31
19
16
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32908672--32908712
21
2.0
21
85
9
57
58
9
9
21
1.59
32908929--32908960
15
2.1
15
94
0
55
71
3
3
21
1.13
32909286--32909340
25
2.2
24
80
3
56
70
3
1
23
1.12
32909466--32909508
17
2.4
18
84
7
52
62
0
2
34
1.08
32909444--32909591
20
7.5
19
68
22
65
62
2
3
32
1.23
32911332--32911635
130
2.3
132
84
4
373
25
18
21
35
1.96
32911332--32911695
130
2.8
129
78
8
358
24
19
20
35
1.96
32913205--32913233
13
2.2
13
100
0
58
31
13
27
27
1.94
32923423--32923588
43
3.9
43
81
6
169
27
15
25
31
1.96
32926768--32926886
47
2.5
47
83
8
143
26
30
18
24
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310