genome.fa.s13.2.7.7.80.10.50.1000.304.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  304  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100338826--100338879	19	2.8	18	78	10	54	40	9	9	40	1.69
100345710--100345752	22	2.0	22	90	0	68	25	9	27	37	1.87
100345706--100345764	22	2.7	22	79	10	66	28	10	25	35	1.89
100347404--100347605	72	2.8	72	84	3	246	26	16	23	33	1.96
100348566--100348615	19	2.5	21	81	12	61	32	16	18	34	1.92
100354076--100354128	24	2.2	24	83	6	63	7	18	0	73	1.06
100354799--100355012	62	3.5	61	78	5	216	25	23	28	22	1.99
100361156--100361226	34	2.1	34	94	0	124	42	15	7	35	1.74
100362711--100362741	16	1.9	16	93	0	53	19	12	3	64	1.41
100364863--100365020	52	3.0	52	100	0	316	36	24	9	29	1.87
100365366--100365392	14	1.9	14	100	0	54	85	7	0	7	0.75
100365999--100366041	19	2.3	19	80	4	52	39	9	34	16	1.80
100369085--100369468	43	8.9	43	86	2	466	30	24	20	24	1.99
100369780--100369833	21	2.6	21	78	0	63	7	38	16	37	1.77
100369808--100369997	87	2.2	87	87	3	267	11	29	18	40	1.86
100375487--100375591	25	4.2	25	77	11	115	33	3	19	43	1.69
100375498--100375984	9	56.3	9	69	18	277	33	2	18	45	1.63
100375525--100375808	59	4.8	58	87	6	338	32	3	19	44	1.66
100375700--100375871	34	5.0	32	75	14	116	30	1	20	47	1.57
100375724--100375780	19	3.1	19	82	12	57	31	0	19	49	1.49
100375498--100375984	43	11.5	43	68	18	263	33	2	18	45	1.63
100375555--100375994	16	26.6	16	68	20	166	33	2	18	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100375841--100375935	39	2.5	39	77	3	104	36	2	15	45	1.59
100375923--100375963	13	2.8	15	85	14	59	34	0	19	46	1.50
100376052--100376098	20	2.3	20	82	10	60	55	2	2	40	1.24
100376048--100376100	21	2.5	22	84	9	74	56	1	1	39	1.21
100378016--100378042	11	2.5	11	100	0	54	55	0	18	25	1.43
100378920--100378971	27	1.9	27	84	0	68	48	9	0	42	1.36
100379080--100379131	26	2.0	26	96	0	95	26	1	19	51	1.57
100379390--100379430	18	2.3	18	87	4	57	31	43	0	24	1.54
100380854--100380921	15	4.9	14	71	16	52	41	35	0	23	1.55
100380857--100380894	15	2.5	15	86	0	58	36	42	0	21	1.53
100381822--100381848	11	2.5	11	100	0	54	55	0	18	25	1.43
100382729--100382780	27	1.9	27	84	0	68	48	9	0	42	1.36
100384634--100384701	15	4.9	14	71	16	52	41	35	0	23	1.55
100384637--100384674	15	2.5	15	86	0	58	36	42	0	21	1.53
100385147--100385549	41	9.8	41	75	10	281	35	23	25	15	1.94
100385147--100385548	82	4.9	82	85	4	481	35	23	24	15	1.94
100385147--100385549	123	3.3	124	78	4	343	35	23	25	15	1.94
100385606--100385698	40	2.4	39	78	8	100	19	26	21	32	1.97
100385687--100387131	722	2.0	722	100	0	2890	39	16	16	28	1.90
100386656--100387959	652	2.0	652	100	0	2608	40	17	15	26	1.89
100392256--100392282	4	6.8	4	100	0	54	77	0	0	22	0.76
100393855--100394020	85	2.0	86	85	2	228	28	18	22	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100394528--100394810	28	10.0	28	74	13	154	51	4	17	26	1.65
100394786--100394855	28	2.5	28	97	0	131	55	11	10	22	1.65
100394866--100395499	319	2.0	319	94	0	1106	30	18	24	27	1.98
100396473--100396648	94	1.9	94	86	4	257	39	6	17	36	1.76
100396758--100396799	22	2.0	22	95	4	77	40	2	14	42	1.58
100396782--100396951	69	2.5	68	84	3	216	45	5	14	34	1.67
100397245--100397286	22	1.9	22	85	0	57	57	0	0	42	0.99
100400008--100400078	17	3.9	19	74	10	58	61	0	1	36	1.05
100408987--100409016	15	2.0	15	100	0	60	33	0	33	33	1.58
100409067--100409113	20	2.4	21	82	10	55	55	6	4	34	1.45
100413865--100413906	22	1.9	22	95	0	75	30	19	2	47	1.62
100414320--100414344	13	1.9	13	100	0	50	52	0	0	48	1.00
100418919--100418956	20	1.9	20	88	0	58	26	7	10	55	1.61
100420279--100420313	18	2.0	17	88	5	52	54	0	0	45	0.99
100421205--100421354	41	3.6	41	97	0	273	23	28	20	27	1.99
100423777--100423875	43	2.3	43	80	3	119	41	15	14	29	1.86
100427752--100427794	22	2.0	22	81	9	52	20	4	4	69	1.25
100433041--100433268	119	1.9	120	81	2	280	38	16	7	38	1.77
100434651--100434675	13	1.9	13	100	0	50	44	24	0	32	1.54
100435359--100435410	17	3.1	17	74	0	59	34	34	5	25	1.80
100436524--100436560	6	5.8	6	90	9	56	45	16	16	21	1.84
100436535--100436687	45	3.4	45	87	1	229	40	21	18	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100436891--100436975	40	2.2	40	82	6	102	41	20	5	32	1.76
100437696--100437721	11	2.4	11	100	0	52	0	42	7	50	1.31
100438088--100438141	28	1.9	28	85	7	74	55	5	0	38	1.23
100439658--100440055	198	2.0	199	99	0	780	36	12	17	33	1.88
100443948--100443999	26	2.0	26	100	0	104	42	19	7	30	1.79
100444350--100444387	14	2.5	16	83	12	53	44	2	2	50	1.30
100444377--100444431	24	2.3	24	100	0	110	29	3	12	54	1.55
100448266--100448321	13	4.3	13	83	0	67	26	7	14	51	1.67
100448343--100448391	13	3.6	13	83	8	62	32	4	14	48	1.62
100461126--100461159	10	3.4	10	100	0	68	0	52	8	38	1.33
100465528--100465664	43	3.2	43	64	17	111	24	21	24	29	1.99
100465456--100465763	87	3.5	87	90	0	438	25	23	22	29	1.99
100466978--100467011	13	2.5	14	90	4	52	14	14	0	70	1.17
100467871--100467912	21	2.1	20	82	8	50	9	9	7	73	1.24
100467838--100467953	30	3.7	30	77	11	110	10	6	7	75	1.20
100467833--100467954	36	3.5	35	76	10	115	9	7	7	75	1.19
100467916--100467961	20	2.3	20	85	7	58	6	0	10	82	0.83
100475874--100475906	12	2.8	12	95	0	57	3	45	24	27	1.68
100481726--100481768	20	2.1	21	82	4	52	53	9	23	13	1.69
100488202--100488250	26	2.0	24	84	8	62	46	16	12	24	1.81
100490152--100490196	18	2.3	20	81	14	58	66	0	6	26	1.16
100496822--100496866	7	6.4	7	100	0	90	42	0	13	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100501405--100501582	27	6.6	27	81	6	164	29	27	16	26	1.97
100501426--100501581	82	1.9	81	85	3	215	29	27	16	26	1.97
100503838--100503873	18	2.0	18	94	0	63	11	30	33	25	1.90
100503839--100503881	18	2.4	18	88	0	59	13	32	30	23	1.93
100504581--100504630	24	2.1	23	88	3	73	58	10	16	16	1.63
100506851--100506876	13	2.0	13	100	0	52	53	0	0	46	1.00
100512036--100512214	27	6.6	27	93	2	295	29	29	13	27	1.95
100512036--100512214	55	3.3	54	94	1	295	29	29	13	27	1.95
100512036--100512214	82	2.2	82	93	0	304	29	29	13	27	1.95
100525166--100525212	15	2.9	16	78	9	51	51	0	0	48	1.00
100526800--100526833	9	3.7	9	96	4	59	58	0	2	38	1.13
100529427--100529818	198	2.0	197	93	0	667	37	17	11	33	1.86
100532359--100532538	28	6.6	27	91	3	279	30	28	12	27	1.93
100532359--100532538	55	3.3	55	94	1	299	30	28	12	27	1.93
100532359--100532538	83	2.2	82	92	1	297	30	28	12	27	1.93
100535166--100535290	28	4.6	27	91	4	187	30	28	12	28	1.93
100535166--100535290	55	2.3	55	90	2	189	30	28	12	28	1.93
100535166--100535315	56	2.7	56	86	5	180	31	29	12	26	1.93
100537557--100537742	73	2.5	73	84	1	230	61	2	8	27	1.35
100537623--100537667	11	3.8	12	85	8	56	68	0	8	22	1.16
100538415--100538439	13	1.9	13	100	0	50	92	8	0	0	0.40
100539464--100539674	44	4.8	43	76	9	165	28	23	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100539459--100539674	89	2.4	88	77	3	220	28	23	15	32	1.95
100539649--100539874	96	2.4	96	85	0	310	24	20	19	34	1.96
100542884--100542943	31	1.9	32	96	3	113	41	15	10	33	1.80
100548489--100548641	11	14.4	11	67	17	58	1	13	12	72	1.20
100548537--100548641	10	10.4	10	73	10	79	1	10	12	75	1.13
100548486--100548555	13	5.8	13	75	9	60	1	15	10	72	1.17
100548537--100548641	20	5.2	22	76	13	93	1	10	12	75	1.13
100549185--100549249	32	2.1	32	97	2	123	47	12	9	30	1.72
100551938--100551970	14	2.4	14	100	0	66	39	42	0	18	1.50
100554762--100554820	25	2.3	26	88	2	84	0	11	13	74	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310