genome.fa.s13.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  124  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39838838--39839285	49	9.3	49	93	3	718	29	29	8	32	1.87
39868739--39868913	46	3.8	46	72	13	178	30	27	20	22	1.98
39868747--39868918	93	1.8	93	88	0	263	29	28	20	22	1.98
39878338--39878407	33	2.1	33	97	0	131	50	5	15	28	1.67
39892233--39892262	11	2.7	11	100	0	60	26	10	10	53	1.66
39894761--39894830	26	2.8	25	81	10	81	40	21	21	17	1.92
39896093--39896182	24	3.8	24	86	2	119	22	22	22	33	1.97
39896094--39896225	23	5.6	23	72	14	90	25	20	20	33	1.97
39897896--39898045	65	2.3	65	80	4	169	36	20	19	24	1.95
39903214--39903312	47	2.1	46	85	9	130	32	9	13	45	1.74
39904035--39904348	170	1.8	170	90	1	504	28	23	17	30	1.97
39905044--39905098	22	2.5	22	72	18	60	58	1	14	25	1.47
39906571--39906717	65	2.3	65	85	0	177	36	22	19	21	1.95
39908051--39908094	22	2.0	22	86	0	61	31	4	29	34	1.78
39909050--39909128	32	2.5	32	85	0	95	32	12	27	26	1.93
39909206--39909274	29	2.4	29	92	0	111	27	15	23	33	1.95
39915892--39916011	60	2.0	60	91	0	195	25	14	20	40	1.89
39918311--39918383	34	2.1	34	97	0	137	34	9	13	42	1.77
39918772--39918857	41	2.1	41	97	0	163	37	32	10	19	1.86
39922636--39922665	8	3.8	8	95	0	51	40	23	0	36	1.55
39922636--39922678	16	2.7	16	85	0	50	46	18	2	32	1.62
39931561--39932055	46	10.8	46	98	0	936	30	28	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39936263--39936361	49	2.0	49	98	0	189	16	33	12	38	1.85
39938598--39939094	46	10.8	46	96	1	908	30	28	19	21	1.98
39938978--39939049	20	3.3	20	66	26	56	27	31	19	20	1.97
39939997--39940040	22	2.0	22	86	0	61	29	18	15	36	1.92
39940096--39940158	32	2.0	31	93	0	99	19	38	12	28	1.88
39944628--39944760	27	4.9	27	79	5	144	34	20	24	20	1.96
39944628--39944763	54	2.5	54	89	2	202	34	20	25	19	1.96
39946314--39946421	26	4.2	26	91	0	180	36	25	7	31	1.83
39952521--39952649	27	4.8	27	81	9	147	34	20	24	20	1.96
39952523--39952653	54	2.4	55	91	3	212	35	21	24	19	1.96
39954205--39954312	26	4.2	26	89	0	153	36	25	7	30	1.84
39958869--39959310	47	9.4	47	92	0	695	32	9	29	28	1.88
39959429--39959507	37	2.1	37	88	4	115	24	18	31	25	1.98
39961245--39961334	41	2.2	41	86	4	119	35	15	26	22	1.94
39964997--39965030	15	2.2	16	90	10	54	79	5	2	11	1.02
39970710--39970872	45	3.6	45	89	0	256	25	26	23	23	2.00
39978425--39978555	45	3.0	45	90	2	203	26	29	19	24	1.99
39985423--39985505	28	3.0	27	85	3	103	30	27	13	28	1.94
39985437--39985562	56	2.2	56	87	0	180	28	28	14	28	1.95
39985437--39985562	28	4.5	28	79	0	126	28	28	14	28	1.95
39985569--39985647	40	2.0	40	82	0	95	35	25	15	24	1.94
39989983--39990244	39	6.7	40	88	7	337	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39998172--39998239	29	2.3	29	85	5	93	27	30	13	27	1.94
39998061--39998388	174	1.9	174	97	0	620	30	24	14	29	1.95
39998341--39998419	29	2.7	30	82	13	110	29	30	15	25	1.96
40003819--40003868	20	2.4	22	83	6	59	22	8	20	50	1.74
40009458--40009534	38	2.0	38	94	0	136	6	7	46	38	1.59
40014845--40014884	13	3.1	13	85	0	53	30	5	22	42	1.75
40028805--40029172	184	2.0	184	100	0	736	37	10	8	43	1.70
40035710--40035761	26	2.0	27	85	11	72	36	0	5	57	1.23
40037318--40037768	223	2.0	223	87	3	667	41	21	11	25	1.87
40038566--40038617	13	4.0	13	78	9	52	75	1	17	5	1.10
40039581--40039625	22	2.0	22	86	0	63	26	15	31	26	1.96
40042020--40042148	47	2.7	48	79	15	144	24	26	18	31	1.98
40041784--40042148	94	3.8	92	74	7	288	23	28	19	28	1.98
40041993--40042147	48	3.3	48	75	17	151	23	28	18	30	1.97
40046277--40046446	47	3.6	47	78	11	152	21	28	21	28	1.99
40046327--40046500	94	1.9	94	87	0	258	21	29	21	28	1.98
40049486--40049591	51	2.1	50	94	1	185	27	19	23	29	1.98
40049801--40051066	40	31.6	40	98	0	2084	29	18	27	24	1.98
40055360--40055489	40	3.2	40	96	0	233	23	19	30	26	1.98
40055360--40055509	80	1.9	79	88	1	228	23	18	29	28	1.98
40057452--40057761	67	4.6	67	98	0	593	30	20	30	19	1.96
40062701--40062760	27	2.3	26	82	2	66	36	20	21	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40062728--40062869	67	2.1	67	85	5	185	30	21	28	19	1.97
40062799--40062850	27	2.0	26	84	3	68	34	21	26	17	1.95
40068790--40068858	30	2.3	30	87	0	111	36	23	14	26	1.93
40075595--40075744	27	5.6	27	77	6	124	26	10	18	46	1.80
40075595--40075744	54	2.8	54	83	8	187	26	10	18	46	1.80
40076848--40076960	31	3.7	30	81	5	122	25	21	19	33	1.97
40077179--40077274	26	3.8	26	91	2	144	30	23	20	25	1.99
40078071--40078162	27	3.4	27	83	8	116	18	25	20	35	1.95
40078215--40078299	28	3.0	28	81	10	93	32	12	15	38	1.85
40078304--40078539	81	2.9	81	85	1	323	30	7	19	42	1.79
40078307--40078539	27	8.7	27	79	6	231	30	7	19	42	1.79
40078307--40078673	27	13.6	27	79	4	204	32	7	20	39	1.81
40078362--40078566	107	1.9	107	80	2	241	31	6	19	41	1.78
40084667--40084704	20	2.0	20	89	5	60	26	7	0	65	1.19
40094952--40095123	67	2.6	66	81	7	170	31	17	28	22	1.96
40094976--40095158	67	2.8	64	78	8	201	28	16	30	23	1.97
40096640--40096734	50	1.9	50	97	0	181	25	25	28	21	1.99
40106316--40106361	22	2.1	22	91	0	74	23	15	26	34	1.94
40110485--40110646	43	3.8	43	76	8	134	29	19	23	27	1.98
40110538--40110637	42	2.3	43	77	5	105	32	20	20	28	1.97
40111574--40111607	6	5.3	6	86	13	50	23	47	29	0	1.52
40111572--40111607	13	2.8	13	100	0	72	25	47	27	0	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40111572--40111605	7	5.1	7	86	13	54	23	47	29	0	1.52
40112075--40112121	9	4.9	10	80	15	55	17	34	27	21	1.95
40113830--40114032	27	7.6	27	84	2	230	27	11	18	41	1.86
40113830--40114011	80	2.3	81	89	0	267	27	12	19	40	1.87
40117977--40118045	33	2.1	33	97	0	129	30	4	17	47	1.67
40119962--40120040	32	2.5	32	89	4	115	25	26	21	26	1.99
40123785--40123839	28	2.0	28	92	0	92	1	29	5	63	1.27
40123813--40123886	39	1.9	39	83	2	96	6	25	8	59	1.51
40130975--40131158	40	4.6	40	82	6	196	23	21	27	27	1.99
40136965--40137047	31	2.7	31	79	9	98	31	3	13	51	1.58
40136986--40137045	29	2.1	29	81	6	68	28	3	15	53	1.57
40138049--40138117	31	2.3	30	80	11	79	49	10	8	31	1.67
40159797--40159848	24	2.2	24	83	13	63	23	0	5	71	1.07
40166150--40166201	25	2.1	25	100	0	104	30	36	0	32	1.58
40174650--40174824	87	2.0	87	95	0	314	43	14	14	26	1.85
40177205--40177286	38	2.1	39	93	2	139	64	4	6	24	1.36
40177693--40177735	17	2.5	17	96	0	77	11	27	37	23	1.89
40178325--40178356	17	1.9	16	93	6	55	18	37	40	3	1.67
40190704--40190757	17	2.8	19	79	20	60	66	7	0	25	1.17
40190704--40190758	18	2.8	19	76	17	60	67	7	0	25	1.16
40192283--40192437	29	5.3	28	79	5	148	36	14	25	23	1.93
40192283--40192436	59	2.6	58	82	5	184	36	14	25	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40194649--40194756	25	4.3	26	73	11	91	31	20	26	21	1.98
40194649--40194766	50	2.4	50	80	8	125	31	20	27	20	1.97
40194695--40194783	25	3.6	25	78	3	90	32	19	28	20	1.96
40196251--40196310	27	2.2	27	82	5	68	26	1	8	63	1.32
40196514--40196539	9	2.9	9	100	0	52	34	0	11	53	1.37
40196826--40196867	23	1.9	21	90	9	66	30	7	4	57	1.47
40196812--40196873	27	2.3	25	79	15	70	30	6	3	59	1.38
40196943--40197002	26	2.3	26	82	8	77	33	5	6	55	1.48
40197017--40197056	20	2.0	20	90	9	64	32	0	5	62	1.17
40197327--40197379	27	2.0	27	81	7	63	28	5	1	64	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310