genome.fa.s13.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  107  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34196494--34196686	38	5.1	38	82	3	203	23	20	24	31	1.98
34196494--34196686	76	2.5	75	81	6	235	23	20	24	31	1.98
34196684--34196806	45	2.7	45	87	0	174	21	18	28	30	1.97
34198501--34198565	25	2.6	25	83	9	71	27	20	30	21	1.98
34201143--34201193	13	4.0	13	76	2	50	45	7	0	47	1.32
34207899--34208042	27	5.3	27	86	3	173	29	22	8	40	1.83
34208046--34208142	27	3.6	27	91	2	124	43	21	8	26	1.81
34208071--34208290	27	8.1	27	80	5	165	40	17	9	32	1.82
34208073--34208223	81	1.9	81	81	2	187	40	19	9	29	1.84
34208041--34208185	54	2.7	53	83	2	182	37	17	13	31	1.88
34209214--34209283	25	2.8	24	86	4	95	24	24	24	27	2.00
34209213--34209296	25	3.4	24	80	8	89	27	21	23	27	1.99
34209431--34209518	42	2.1	42	95	0	158	34	14	17	34	1.90
34209546--34209627	30	2.7	30	90	3	121	28	19	25	26	1.99
34211857--34212022	27	6.2	27	87	1	217	31	24	5	38	1.78
34211857--34212022	81	2.1	80	89	1	251	31	24	5	38	1.78
34212058--34212181	27	4.6	27	85	3	169	40	22	8	29	1.82
34212025--34212180	54	2.9	54	82	3	163	39	20	10	29	1.87
34212058--34212234	81	2.2	81	80	9	191	41	20	7	29	1.81
34212083--34212269	27	6.9	27	76	11	96	40	19	9	31	1.82
34212030--34212289	108	2.4	106	77	6	254	40	20	10	29	1.85
34213197--34213266	25	2.8	24	93	4	113	24	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34213414--34213547	42	3.2	42	96	2	243	32	13	20	34	1.91
34213571--34213716	31	4.7	31	93	0	249	29	16	25	28	1.97
34216283--34216313	12	2.6	12	94	0	53	6	45	22	25	1.76
34217547--34217601	29	1.9	29	92	3	94	30	27	20	21	1.98
34222581--34222617	11	3.5	11	78	14	51	75	0	21	2	0.92
34222577--34222615	20	2.0	20	100	0	78	76	0	20	2	0.90
34222654--34222722	35	2.0	35	91	0	111	15	7	18	57	1.61
34223438--34223572	44	3.1	42	78	11	139	22	14	27	36	1.92
34223452--34223573	42	2.8	43	86	6	149	22	15	27	34	1.95
34226198--34226369	79	2.2	80	91	3	276	25	20	27	26	1.99
34226145--34226369	40	5.7	40	83	5	278	25	21	27	25	2.00
34234524--34234584	30	2.0	30	96	0	113	42	39	1	16	1.58
34236180--34236409	121	1.9	122	99	0	453	34	24	18	22	1.96
34242174--34242215	21	2.0	21	85	0	57	19	16	42	21	1.89
34251208--34251258	19	2.7	19	77	17	61	33	5	0	60	1.21
34251232--34251356	13	9.7	13	67	20	59	32	4	1	60	1.27
34263575--34265565	206	9.7	206	90	1	2963	30	18	22	28	1.98
34263575--34265565	411	4.8	412	91	0	3019	30	18	22	28	1.98
34263575--34265565	617	3.2	618	89	0	3035	30	18	22	28	1.98
34267151--34267217	7	9.1	7	75	15	55	37	4	1	56	1.29
34267153--34267276	16	6.9	17	71	17	65	33	5	1	58	1.31
34267204--34267254	20	2.6	19	75	9	57	31	5	1	60	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34267192--34267275	17	5.0	17	74	17	68	30	4	1	61	1.24
34269971--34270043	36	2.0	36	100	0	146	32	13	17	35	1.89
34279736--34279770	6	5.8	6	86	0	52	57	0	25	17	1.40
34279736--34279771	18	2.0	18	94	0	63	58	0	25	16	1.38
34286552--34286759	100	2.1	101	82	5	251	31	10	17	39	1.84
34286551--34286760	50	4.2	50	78	6	192	31	10	17	40	1.84
34294916--34294988	27	2.7	28	87	6	105	36	24	10	27	1.89
34294972--34295185	27	7.9	27	86	2	286	32	21	21	24	1.98
34294945--34295175	54	4.3	52	79	9	207	32	21	20	24	1.97
34295173--34295239	26	2.6	27	76	7	75	26	16	22	34	1.95
34295180--34295229	26	1.9	26	91	0	82	30	14	22	34	1.93
34297462--34297525	31	2.1	31	96	0	119	48	12	9	29	1.72
34298662--34299808	46	25.0	46	95	0	1983	21	23	15	39	1.91
34303393--34303423	14	2.2	14	100	0	62	48	16	0	35	1.46
34303703--34303753	25	2.0	25	92	0	84	47	21	15	15	1.83
34305658--34305884	48	4.8	48	72	10	200	27	21	23	27	1.99
34308790--34308960	41	4.2	41	91	0	263	52	6	20	20	1.68
34310824--34310857	17	2.0	17	94	0	59	50	0	20	29	1.49
34310826--34310866	17	2.4	17	87	0	55	56	0	12	31	1.36
34311711--34311878	43	3.9	43	77	7	144	27	15	23	32	1.95
34319151--34319641	206	2.4	204	90	3	743	30	21	17	30	1.96
34327718--34327767	15	3.5	14	79	15	50	42	8	24	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34330941--34331112	40	4.3	40	88	2	222	25	27	21	25	1.99
34330943--34331165	40	5.6	39	83	5	216	25	27	21	25	1.99
34330941--34331165	80	2.8	79	80	7	240	25	27	21	25	1.99
34331097--34331174	40	1.9	41	82	10	97	26	28	20	24	1.99
34338854--34339156	40	7.6	40	89	3	380	27	28	20	24	1.99
34348944--34349007	24	2.7	24	87	0	83	28	28	37	6	1.81
34349025--34349063	18	2.2	18	90	9	62	20	15	5	58	1.55
34356398--34356449	16	3.2	16	76	10	52	51	11	7	28	1.65
34364242--34364825	210	2.8	210	83	2	629	34	15	22	27	1.94
34364518--34365093	210	2.8	206	80	4	627	34	14	22	28	1.94
34364518--34365093	207	2.8	206	80	4	629	34	14	22	28	1.94
34365232--34365309	38	2.1	38	92	0	129	41	6	23	29	1.79
34367790--34367849	22	2.7	23	73	19	63	66	6	0	26	1.16
34367799--34367832	4	8.0	4	90	9	50	73	2	0	23	0.97
34375252--34375291	19	2.2	18	95	4	71	40	2	15	42	1.60
34375252--34375298	19	2.5	19	86	3	69	36	2	14	46	1.57
34375308--34375404	42	2.3	42	85	3	133	30	6	14	48	1.68
34379653--34379689	19	1.9	19	100	0	74	37	2	16	43	1.62
34379731--34379810	41	2.0	41	94	0	142	32	5	12	50	1.62
34383487--34383527	19	2.2	19	95	0	73	39	4	12	43	1.63
34383576--34383653	40	2.0	40	100	0	156	33	5	12	48	1.63
34392278--34392313	18	2.0	18	100	0	72	55	11	0	33	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34409160--34409447	152	1.9	154	91	3	476	43	10	4	42	1.59
34410284--34410665	42	9.2	42	81	4	405	38	22	17	21	1.93
34410285--34410596	128	2.5	125	81	6	357	39	21	17	21	1.93
34410493--34410611	40	3.0	39	80	3	132	36	20	20	22	1.95
34411057--34411134	21	3.8	20	79	12	77	1	7	8	82	0.91
34416445--34416584	27	5.2	28	90	5	184	35	22	24	18	1.96
34422973--34423021	26	1.9	26	88	12	75	34	4	6	55	1.44
34425052--34425114	30	2.1	30	93	0	108	25	3	14	57	1.52
34425237--34425270	12	2.8	12	90	0	50	67	0	0	32	0.91
34425958--34426007	21	2.3	21	83	10	57	50	4	4	42	1.40
34428434--34428906	194	2.5	185	86	8	614	29	17	19	33	1.95
34430136--34430183	19	2.5	20	80	16	57	29	0	4	66	1.10
34430220--34430263	22	2.0	22	100	0	88	27	9	31	31	1.88
34439958--34440023	23	3.1	21	72	18	55	59	0	1	39	1.07
34450010--34450053	18	2.4	18	80	3	52	50	13	13	22	1.77
34457403--34457459	20	2.8	20	82	10	80	7	28	0	64	1.19
34462364--34462523	43	3.7	43	81	5	189	25	18	25	31	1.97
34468509--34468535	6	4.5	6	100	0	54	55	44	0	0	0.99
34470165--34470218	27	2.0	27	100	0	108	22	18	22	37	1.95
34471516--34471543	7	4.0	7	100	0	56	85	0	0	14	0.59
34474669--34474715	21	2.2	21	77	7	51	55	2	6	36	1.37
34475745--34475779	17	2.0	18	88	5	54	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34478172--34478211	21	1.9	21	84	0	53	27	10	30	32	1.89
34483923--34484020	44	2.2	44	88	0	151	27	24	18	29	1.98
34483945--34484421	44	10.7	44	74	9	266	27	20	19	33	1.96
34483986--34484368	89	4.3	88	72	10	209	27	19	19	33	1.96
34484192--34484287	49	2.0	49	82	0	120	25	22	18	33	1.97
34485506--34485610	42	2.5	42	92	6	167	36	22	22	18	1.95
34485506--34485617	21	5.2	22	78	8	124	36	21	23	18	1.95
34487332--34488066	89	8.3	88	77	4	548	29	20	16	33	1.95
34487331--34487840	133	3.8	133	85	0	617	29	20	16	33	1.94
34487332--34488066	222	3.3	222	82	3	782	29	20	16	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310