genome.fa.s13.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  136  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44126240--44126395	82	1.9	81	84	3	206	28	28	17	25	1.97
44132341--44132532	40	4.8	40	91	2	280	27	25	22	25	2.00
44132480--44132592	60	1.9	60	90	0	181	26	24	21	27	1.99
44132538--44132632	40	2.4	40	96	0	172	29	24	20	26	1.99
44132438--44132637	100	2.0	100	93	0	337	28	25	20	27	1.99
44134908--44134942	16	2.2	16	94	0	61	54	2	0	42	1.15
44135462--44135529	31	2.2	31	86	5	93	45	11	14	27	1.80
44149899--44149956	22	2.8	21	86	5	73	44	1	5	48	1.35
44154292--44154339	20	2.5	20	86	3	62	54	8	0	37	1.31
44155479--44155503	9	2.8	9	100	0	50	92	0	8	0	0.40
44156739--44156871	43	2.9	45	84	8	162	23	17	29	30	1.97
44156783--44156882	51	2.0	51	83	0	128	25	18	26	31	1.97
44165366--44165465	29	3.5	29	87	1	139	25	16	31	28	1.96
44165366--44165476	58	1.9	57	87	1	159	26	15	30	27	1.96
44174488--44174539	22	2.4	22	90	0	77	15	3	50	30	1.62
44183659--44183746	30	2.9	30	75	0	104	27	17	28	27	1.97
44192053--44192298	51	4.9	50	88	3	309	27	24	20	27	1.99
44192545--44192598	27	2.0	27	85	0	72	38	14	7	38	1.75
44197239--44197410	93	1.8	93	93	0	299	28	30	20	20	1.98
44197231--44197406	46	3.8	46	80	10	214	29	29	20	20	1.98
44197282--44197425	46	3.1	45	77	11	157	29	29	20	20	1.98
44199424--44200226	403	2.0	402	93	0	1383	33	19	8	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44200658--44200781	42	2.9	43	80	8	128	28	25	18	27	1.98
44206011--44206230	94	2.3	92	82	7	239	26	28	20	25	1.99
44226575--44226697	49	2.5	49	85	1	156	23	30	21	24	1.99
44226708--44226873	48	3.5	47	80	6	192	24	27	19	28	1.98
44233255--44233310	18	3.2	17	76	19	53	50	0	10	39	1.37
44234557--44234624	35	1.9	35	90	0	109	27	19	23	29	1.98
44236081--44236140	26	2.3	26	85	0	84	35	13	11	40	1.81
44239467--44239612	48	2.8	51	80	8	145	38	16	23	21	1.93
44239944--44239974	16	1.9	16	93	0	53	41	0	22	35	1.54
44240202--44240455	55	4.8	53	77	9	236	37	17	24	21	1.94
44240647--44240677	16	1.9	16	93	0	53	41	0	22	35	1.54
44241396--44241438	21	2.0	21	100	0	86	55	4	4	34	1.41
44241709--44241798	42	2.1	42	97	0	171	18	6	23	51	1.70
44243583--44243631	15	3.3	15	79	0	53	53	18	18	10	1.72
44243613--44243661	15	3.3	15	82	0	62	57	16	10	16	1.65
44251453--44251518	25	2.5	26	87	4	89	22	25	21	30	1.99
44254917--44254987	29	2.4	29	90	0	106	40	11	26	21	1.87
44254975--44255144	29	5.9	29	83	4	218	37	15	27	20	1.92
44254942--44255132	87	2.2	87	91	1	321	37	14	28	19	1.91
44264624--44264671	26	1.9	25	87	8	71	20	4	27	47	1.68
44267381--44267426	14	3.1	15	81	9	58	30	15	4	50	1.63
44268446--44268497	21	2.5	21	79	14	63	42	17	1	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44269077--44269122	5	9.2	5	100	0	92	60	0	0	39	0.97
44270570--44270627	21	2.7	20	79	12	62	22	3	3	70	1.17
44274528--44274612	38	2.2	38	97	0	161	34	34	11	20	1.89
44277842--44278043	47	4.4	45	73	13	135	23	27	18	30	1.98
44277873--44278044	92	1.9	92	87	2	256	23	27	18	30	1.98
44277877--44278043	46	3.6	45	75	8	158	22	27	18	31	1.97
44285403--44285665	46	5.6	48	74	15	164	24	28	17	28	1.97
44285455--44285665	46	4.5	46	78	10	182	25	28	17	28	1.97
44285455--44285668	94	2.3	92	83	10	249	25	28	17	28	1.98
44296914--44297615	349	2.0	349	100	0	1404	41	23	4	30	1.74
44297780--44297821	16	2.6	16	85	14	52	35	11	16	35	1.86
44299948--44300209	39	6.7	40	87	7	337	25	22	27	24	2.00
44315037--44315094	21	2.7	20	79	12	62	22	3	3	70	1.17
44320852--44320908	27	2.1	27	83	0	69	33	22	8	35	1.85
44320865--44321114	27	9.3	26	82	11	258	26	21	10	41	1.85
44320865--44321114	54	4.6	54	80	11	287	26	21	10	41	1.85
44320868--44321114	81	3.0	81	85	6	315	27	20	10	41	1.85
44321119--44321312	27	7.2	27	84	3	212	36	17	19	26	1.94
44321512--44321566	27	2.1	26	93	3	92	18	23	23	34	1.96
44321878--44322066	6	30.7	6	71	17	120	18	16	15	49	1.80
44321874--44321932	25	2.4	25	82	0	82	22	15	11	50	1.76
44321896--44322045	31	4.6	31	72	14	108	18	17	15	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44321896--44321978	37	2.2	37	78	0	94	19	15	16	48	1.82
44321939--44322003	25	2.6	25	90	0	94	16	18	18	46	1.85
44321878--44322066	62	3.1	62	87	2	265	18	16	15	49	1.80
44321959--44322045	37	2.4	37	88	0	138	18	18	14	48	1.82
44321937--44322066	19	7.1	18	73	15	61	17	17	15	49	1.80
44323785--44323860	27	2.8	27	86	4	73	31	26	7	34	1.85
44323802--44324049	27	9.2	27	79	6	252	27	22	9	40	1.85
44323803--44324049	81	3.0	81	85	5	313	27	21	9	40	1.85
44324061--44324249	27	7.0	27	84	2	200	35	19	19	25	1.95
44324054--44324249	54	3.6	54	82	5	243	36	18	18	26	1.94
44324062--44324247	81	2.3	82	84	1	241	36	18	19	25	1.94
44324448--44324527	27	3.0	26	88	3	97	20	22	21	36	1.95
44324557--44324700	6	23.3	6	74	16	107	18	18	14	47	1.82
44324557--44324638	37	2.2	37	84	0	110	19	18	14	47	1.82
44324600--44324663	25	2.6	25	87	0	83	18	18	14	48	1.81
44324556--44324701	62	2.4	62	95	0	256	19	19	14	47	1.83
44324619--44324700	37	2.2	37	84	0	110	18	19	14	47	1.82
44324556--44324700	31	4.7	31	72	10	118	18	19	14	47	1.82
44327670--44327722	6	8.8	6	87	8	81	16	15	15	52	1.74
44336565--44336677	27	4.2	27	77	13	108	20	22	19	38	1.94
44337487--44337599	27	4.2	27	77	13	108	20	22	19	38	1.94
44336086--44337927	922	2.0	922	100	0	3684	26	17	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44338568--44338598	16	2.0	16	93	6	55	58	12	3	25	1.50
44345195--44345270	26	2.8	27	88	4	100	34	22	11	31	1.90
44345374--44345485	27	4.2	26	80	12	109	18	24	21	35	1.95
44345378--44345484	54	2.0	54	85	3	144	19	24	19	36	1.95
44347159--44347341	84	2.2	84	87	1	271	18	20	25	36	1.95
44347159--44347375	41	5.2	41	87	4	303	17	20	25	36	1.94
44347159--44347386	125	1.8	125	89	1	359	19	19	24	36	1.95
44353375--44353412	19	2.0	20	89	5	60	71	0	7	21	1.11
44360769--44360808	19	2.0	20	90	4	64	72	0	7	20	1.08
44363225--44363382	41	3.8	41	85	3	217	20	18	25	36	1.95
44363224--44363403	84	2.2	83	85	6	231	21	18	24	36	1.95
44363224--44363403	41	4.3	40	82	8	175	21	18	24	36	1.95
44363359--44363532	87	2.0	87	96	0	321	32	13	22	31	1.92
44379755--44379845	45	2.0	45	100	0	182	30	6	17	45	1.74
44393396--44393438	21	2.0	21	86	8	61	55	2	25	16	1.53
44397006--44397044	21	1.9	20	89	5	60	33	0	20	46	1.51
44397789--44397855	6	10.8	6	78	12	73	47	14	19	17	1.82
44397789--44397855	25	2.7	25	90	0	107	47	14	19	17	1.82
44397974--44398079	27	4.0	26	86	6	131	37	19	23	18	1.94
44398669--44399018	27	12.9	27	86	3	445	26	20	18	35	1.95
44398724--44399056	81	4.1	81	83	3	242	27	19	17	35	1.94
44399075--44399293	27	8.3	27	79	8	245	30	11	20	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44399101--44399293	53	3.6	53	86	5	248	30	11	19	38	1.87
44399087--44399293	106	2.0	106	86	3	292	29	11	20	38	1.88
44400721--44400893	27	6.4	27	83	4	179	37	19	19	24	1.94
44400721--44400894	54	3.2	54	81	3	206	37	18	18	24	1.94
44401639--44401698	27	2.3	26	85	2	75	21	23	20	35	1.96
44408097--44408269	27	6.4	27	83	2	222	35	20	20	23	1.96
44408097--44408269	54	3.2	54	86	3	258	35	20	20	23	1.96
44415639--44415819	90	2.0	90	100	0	362	24	24	9	40	1.85
44420276--44420442	84	2.0	84	98	0	325	33	17	24	24	1.96
44423577--44423688	43	2.6	43	81	6	147	28	22	19	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310