Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  273  of  310  ( 37082 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90259727--90259769
22
1.9
23
85
4
61
60
11
0
27
1.31
90264171--90264195
13
1.9
13
100
0
50
64
12
0
24
1.27
90264159--90264215
29
2.0
29
82
0
69
61
8
1
28
1.36
90269453--90269495
19
2.3
19
84
8
52
44
2
0
53
1.13
90270588--90270622
16
2.1
17
89
5
54
68
0
0
31
0.90
90272276--90272336
6
10.2
6
75
7
52
62
4
4
27
1.37
90272276--90272335
21
2.9
21
84
0
66
61
5
5
28
1.38
90280486--90280605
51
2.4
51
91
0
186
38
12
22
26
1.90
90289016--90289388
133
2.8
131
77
8
355
35
13
13
38
1.83
90291260--90291321
20
3.3
17
75
18
52
66
1
6
25
1.25
90291268--90291321
19
2.8
19
75
10
56
66
1
7
24
1.27
90291307--90291362
29
2.0
27
83
13
69
64
0
5
30
1.16
90291505--90291546
3
14.0
3
85
9
59
64
4
0
30
1.14
90291508--90291546
15
2.6
15
95
0
69
64
5
0
30
1.15
90293483--90293788
88
3.5
88
89
2
474
26
22
23
27
2.00
90293782--90294498
86
8.3
86
86
1
941
22
24
21
31
1.98
90294347--90294498
44
3.5
44
72
5
155
18
26
22
32
1.97
90295831--90295865
10
3.5
10
84
0
52
0
14
0
85
0.59
90296473--90296544
31
2.3
32
83
9
87
38
0
2
58
1.13
90298345--90298618
46
6.0
46
93
0
388
40
14
23
21
1.91
90298904--90298936
17
2.0
17
94
5
59
48
0
15
36
1.45
90301672--90301757
31
2.7
32
77
17
81
39
0
4
55
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90301713--90301757
11
3.9
11
80
11
54
35
0
2
62
1.08
90303844--90303876
17
2.0
17
94
5
59
48
0
15
36
1.45
90307625--90307666
19
2.2
19
87
8
59
45
11
21
21
1.84
90309922--90309982
18
3.3
18
79
20
72
67
1
6
24
1.24
90309998--90310050
27
2.0
27
81
7
63
64
1
9
24
1.34
90310109--90310200
3
31.7
3
75
12
77
60
5
3
30
1.35
90312831--90312868
20
1.9
20
88
0
58
18
15
10
55
1.68
90314897--90314959
9
6.9
9
76
20
60
60
1
0
38
1.07
90314913--90314969
17
3.4
17
81
13
73
59
1
0
38
1.08
90314904--90314990
26
3.2
26
78
18
88
62
1
0
36
1.03
90314913--90314969
9
6.8
8
81
18
71
59
1
0
38
1.08
90314922--90314989
7
9.1
7
80
16
50
61
1
0
36
1.05
90314870--90314990
10
13.4
9
73
19
85
64
1
0
33
1.09
90315706--90315782
29
2.6
29
79
6
75
35
2
3
58
1.30
90315752--90315802
22
2.3
22
80
16
61
41
1
3
52
1.31
90322303--90322355
7
7.6
7
95
0
88
30
11
32
26
1.91
90324015--90324155
70
2.0
70
98
0
273
26
3
27
41
1.72
90334800--90334848
24
2.0
24
100
0
98
36
12
4
46
1.60
90356176--90356223
10
4.8
10
82
10
53
66
2
6
25
1.26
90356174--90356233
20
3.0
19
76
9
66
66
1
6
25
1.25
90356818--90356856
11
3.5
11
82
6
51
33
0
0
66
0.92
90358076--90358144
20
3.8
18
85
11
81
76
0
1
21
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90358089--90358139
11
4.2
13
77
22
58
78
0
0
21
0.75
90358089--90358144
16
3.4
17
79
13
64
78
0
0
21
0.75
90358077--90358144
16
4.2
16
74
20
61
76
0
1
22
0.87
90358077--90358147
24
3.0
23
86
13
92
76
0
1
22
0.87
90358076--90358147
12
5.9
12
76
23
71
76
0
1
22
0.86
90361661--90361692
5
6.4
5
100
0
64
21
0
0
78
0.76
90362024--90362373
131
2.7
131
92
0
567
26
17
20
35
1.94
90363327--90363386
28
2.1
29
90
3
95
23
33
21
21
1.97
90366655--90366691
13
2.8
13
87
4
56
43
13
0
43
1.44
90371771--90371813
18
2.5
17
75
20
52
58
0
2
39
1.11
90372458--90372485
14
2.0
14
100
0
56
42
0
0
57
0.99
90374397--90374458
19
3.1
19
70
20
63
17
17
17
46
1.84
90374381--90374458
41
1.9
41
94
0
138
17
16
20
44
1.86
90377043--90377219
72
2.4
72
83
6
203
35
19
15
29
1.93
90379832--90379896
32
2.0
32
100
0
130
30
6
24
38
1.80
90383546--90383813
124
2.2
124
99
0
527
26
18
18
36
1.94
90384328--90384359
15
2.1
15
94
0
55
28
6
0
65
1.16
90385360--90385438
16
5.1
16
76
11
74
54
0
7
37
1.29
90389905--90389961
26
2.2
26
96
0
105
31
7
24
36
1.82
90402403--90402429
13
2.1
13
100
0
54
0
22
22
55
1.44
90406955--90407210
75
3.4
75
80
6
245
33
16
18
31
1.93
90409107--90409151
22
2.0
22
82
0
54
28
6
2
62
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90409314--90409411
11
8.7
12
74
15
59
41
0
3
55
1.15
90409314--90409482
35
4.2
38
72
21
100
39
1
4
55
1.30
90409349--90409389
19
2.2
19
90
0
64
39
0
2
58
1.11
90409361--90409412
22
2.4
21
83
3
68
42
0
3
53
1.19
90409314--90409414
42
2.3
44
83
14
129
41
0
2
55
1.15
90409406--90409482
23
3.3
23
77
15
70
36
3
5
54
1.41
90409425--90409505
22
3.6
23
75
18
80
34
1
4
59
1.27
90409515--90409566
23
2.2
23
82
6
59
30
1
9
57
1.42
90409515--90409765
24
10.9
23
67
21
100
33
3
7
54
1.47
90409750--90409829
37
2.1
39
79
9
94
33
3
5
57
1.38
90409978--90410036
22
2.6
22
75
2
55
35
6
3
54
1.44
90410053--90410173
21
5.7
22
67
24
73
34
2
5
57
1.36
90410050--90410172
28
4.3
27
67
20
81
34
2
5
57
1.35
90410073--90410204
41
3.2
39
68
19
122
33
3
7
55
1.46
90410085--90410218
43
3.1
43
70
19
143
32
3
8
55
1.47
90410094--90410221
37
3.1
37
66
29
98
33
3
7
56
1.42
90410094--90410230
18
7.9
17
66
22
54
33
3
6
56
1.43
90410051--90410238
86
2.2
86
100
0
376
34
3
6
56
1.41
90415488--90415518
15
2.1
15
100
0
62
38
6
32
22
1.80
90416455--90416484
15
2.0
15
93
0
51
23
6
46
23
1.75
90419789--90419824
18
1.9
19
88
5
56
25
0
8
66
1.19
90419791--90419832
19
2.2
19
83
8
50
23
0
9
66
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90424135--90424183
21
2.3
23
79
13
59
55
4
0
40
1.19
90431057--90431165
54
2.0
54
89
0
164
30
27
15
26
1.96
90445670--90445762
18
5.2
18
93
0
159
31
17
24
26
1.97
90445670--90445762
36
2.6
36
98
0
177
31
17
24
26
1.97
90447590--90447629
20
2.0
20
95
0
71
35
10
22
32
1.87
90449807--90449862
26
2.2
26
93
6
96
32
7
23
37
1.82
90454091--90454136
18
2.5
19
80
16
60
28
10
0
60
1.30
90460703--90460730
12
2.3
12
100
0
56
14
7
7
71
1.29
90460625--90460890
85
3.0
87
82
6
308
26
14
19
39
1.90
90460819--90461249
71
5.9
72
75
13
360
30
16
19
32
1.94
90460819--90462064
161
7.8
153
78
15
554
28
17
19
34
1.94
90460733--90461345
226
2.7
222
84
6
782
29
15
20
34
1.94
90461119--90461243
66
1.9
66
89
0
196
32
16
24
28
1.96
90461184--90461522
89
3.8
88
83
7
470
28
15
19
36
1.93
90461452--90461595
73
2.0
73
90
0
225
29
15
20
34
1.94
90461275--90461846
250
2.3
242
83
8
679
27
17
19
35
1.94
90461581--90461611
16
1.9
16
93
0
53
16
12
6
64
1.47
90461511--90461686
89
2.0
90
91
1
291
25
17
19
38
1.93
90461347--90462000
325
2.0
320
84
6
847
27
17
19
35
1.95
90461186--90462089
413
2.2
409
81
10
1039
27
17
20
35
1.95
90461347--90462009
161
4.1
159
86
4
825
27
17
19
35
1.94
90461906--90461933
14
2.0
14
100
0
56
14
14
7
64
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90461832--90462236
88
4.6
87
80
8
369
27
16
19
35
1.94
90461939--90462153
89
2.4
88
91
2
333
29
16
19
34
1.94
90462110--90462322
88
2.4
89
81
5
218
28
15
19
36
1.93
90474907--90474956
24
2.1
24
85
7
66
42
12
22
24
1.87
90480703--90480740
19
2.0
19
85
10
51
36
0
2
60
1.11
90480732--90480777
18
2.5
18
80
16
58
28
10
0
60
1.30
90485423--90485493
24
3.0
24
76
0
70
19
25
29
25
1.99
90488683--90488713
11
2.7
12
90
10
55
61
0
22
16
1.34
90491590--90491627
20
1.9
20
100
0
76
28
0
5
65
1.14
90492899--90492941
16
2.6
17
85
7
54
44
0
2
53
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310