genome.fa.s13.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  141  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46030046--46030441	199	2.0	199	96	0	729	34	19	13	31	1.91
46038147--46038398	44	5.7	44	77	9	208	30	22	14	32	1.94
46038179--46038395	45	4.9	45	79	7	167	30	23	13	32	1.93
46038179--46038399	89	2.5	89	79	5	241	30	22	14	32	1.93
46038180--46039189	44	22.9	44	73	6	597	29	21	16	32	1.95
46038549--46039139	89	6.7	89	72	6	360	30	20	16	31	1.95
46038527--46039139	133	4.6	133	90	2	849	30	20	16	32	1.95
46048576--46048688	56	2.0	56	94	0	199	23	20	28	27	1.99
46056703--46056767	21	3.2	21	75	20	84	40	20	26	13	1.89
46056685--46056816	39	3.6	38	80	15	161	38	21	25	15	1.92
46056735--46056798	31	2.1	31	93	0	110	42	18	21	17	1.89
46063594--46063644	21	2.4	22	83	6	68	15	1	13	68	1.30
46066577--46066638	31	2.0	31	93	0	106	30	11	33	24	1.90
46074139--46074164	10	2.6	10	100	0	52	30	7	50	11	1.67
46075458--46075505	17	2.8	17	83	3	51	29	10	2	58	1.43
46075472--46075536	21	3.0	21	78	10	60	26	10	1	61	1.38
46075586--46075632	5	8.6	5	82	17	58	25	17	2	55	1.53
46075586--46075632	11	4.3	10	82	17	58	25	17	2	55	1.53
46075586--46075644	28	2.1	28	84	6	75	30	16	1	50	1.55
46078679--46078752	29	2.4	30	81	16	82	54	5	0	40	1.24
46094691--46094795	54	1.9	54	96	0	192	24	16	21	37	1.93
46094716--46094834	26	4.5	26	69	19	86	23	21	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46094920--46094968	26	1.9	26	87	4	73	32	26	14	26	1.94
46102852--46102922	28	2.6	27	90	2	106	29	11	28	30	1.91
46102869--46102929	28	2.2	28	87	0	95	36	9	24	29	1.88
46103041--46103141	43	2.3	42	79	14	107	24	17	27	29	1.98
46126480--46126538	14	4.3	14	85	8	68	44	1	10	44	1.48
46126486--46126538	4	12.0	4	79	15	52	45	1	7	45	1.42
46135130--46135170	22	1.9	21	85	14	57	39	0	14	46	1.45
46139490--46139534	23	2.0	23	86	8	65	53	6	20	20	1.67
46143438--46143516	35	2.3	35	79	14	92	44	1	5	49	1.32
46143774--46143806	14	2.4	14	100	0	66	30	6	15	48	1.69
46144606--46144726	47	2.5	47	77	5	127	21	19	24	33	1.97
46144795--46144929	39	3.5	39	79	1	128	40	10	11	37	1.75
46144780--46144925	78	1.9	77	84	1	193	40	10	10	37	1.76
46146401--46146427	13	2.1	13	100	0	54	7	7	0	85	0.75
46151040--46151085	22	2.1	22	87	0	65	63	2	10	23	1.38
46157976--46158070	47	2.0	47	100	0	190	25	10	18	45	1.82
46158146--46158585	219	2.0	224	92	4	746	25	13	22	38	1.90
46160611--46160909	111	2.7	110	92	2	485	27	15	17	39	1.90
46160981--46161009	14	2.1	14	100	0	58	31	27	0	41	1.56
46162133--46162207	37	2.0	37	100	0	150	26	13	10	49	1.74
46162827--46162878	27	1.9	27	92	0	86	19	5	28	46	1.73
46163281--46163355	37	2.0	37	100	0	150	26	13	10	49	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46163975--46164026	27	1.9	27	92	0	86	19	5	28	46	1.73
46164526--46164551	13	2.0	13	100	0	52	15	30	23	30	1.95
46164787--46164902	58	2.0	58	100	0	232	24	13	12	50	1.76
46171898--46171968	35	2.0	35	97	0	133	32	15	18	33	1.92
46180312--46180394	41	2.0	41	95	0	148	37	6	12	44	1.66
46181355--46181384	11	2.7	11	94	0	51	50	0	10	40	1.36
46184015--46184052	20	1.9	20	94	0	67	15	13	28	42	1.85
46186214--46186268	24	2.2	25	87	3	76	40	18	20	21	1.92
46191432--46191592	52	3.3	50	78	10	163	23	16	31	28	1.96
46191447--46191589	46	3.0	47	83	6	162	22	18	31	27	1.97
46194371--46194542	93	1.8	93	93	0	299	21	20	29	28	1.98
46194377--46194549	46	3.8	45	77	13	181	21	19	30	29	1.97
46201954--46202126	46	3.7	46	78	13	210	21	21	27	28	1.99
46201951--46202121	93	1.8	93	96	0	315	21	21	28	28	1.99
46212915--46213012	50	2.0	50	93	0	169	42	14	13	29	1.83
46225619--46225755	73	1.9	73	90	3	222	47	10	2	38	1.54
46226087--46226266	88	2.1	86	92	2	297	35	19	21	24	1.96
46228530--46228573	11	3.8	11	82	11	61	47	0	22	29	1.51
46228522--46228577	24	2.3	24	96	0	103	48	0	25	26	1.52
46228522--46228561	13	3.2	13	79	13	57	47	0	27	25	1.52
46228536--46228576	13	3.3	13	73	13	50	51	0	19	29	1.47
46228666--46228774	50	2.2	50	95	1	193	44	3	12	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46234443--46234587	47	3.1	46	81	4	173	22	14	29	33	1.93
46239430--46239463	17	2.0	17	94	0	59	17	2	8	70	1.25
46242854--46242884	16	1.9	16	93	0	53	35	22	0	41	1.54
46242851--46242890	20	2.0	20	85	0	53	37	22	0	40	1.54
46243076--46243330	55	4.8	54	78	7	238	20	26	16	36	1.94
46243669--46243725	30	1.9	29	85	3	78	26	26	3	43	1.70
46250077--46250103	6	4.5	6	100	0	54	14	0	0	85	0.61
46250068--46250103	18	2.0	18	88	0	54	13	0	5	80	0.88
46251496--46251585	44	2.0	44	93	0	153	27	2	27	42	1.67
46259559--46259701	47	3.0	47	96	0	268	27	18	9	43	1.82
46261235--46261407	46	3.7	46	75	13	192	21	20	28	29	1.98
46261229--46261400	93	1.8	93	92	0	290	21	21	27	29	1.99
46265262--46265330	20	3.0	24	79	14	65	66	8	0	24	1.19
46265293--46265330	20	1.9	20	94	0	67	76	10	0	13	1.02
46267111--46267144	16	2.2	15	94	5	59	70	0	0	29	0.87
46267110--46267147	16	2.4	15	87	12	58	68	0	0	31	0.90
46272739--46273060	166	1.9	166	92	0	545	24	14	16	45	1.84
46278280--46278356	29	2.6	30	73	26	76	55	0	2	41	1.13
46278391--46278432	14	3.2	14	74	19	54	42	2	0	54	1.13
46278380--46278432	25	2.1	25	100	0	106	41	3	0	54	1.18
46279166--46279208	21	2.0	21	86	8	61	62	2	0	34	1.08
46279316--46279372	19	2.9	20	78	16	57	40	3	3	52	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46283176--46283225	21	2.3	21	93	3	82	44	18	4	34	1.68
46292688--46292810	20	6.1	20	72	13	99	39	17	28	13	1.88
46296070--46296104	18	1.9	18	94	0	61	57	8	5	28	1.52
46296102--46296157	25	2.2	27	78	12	64	50	5	1	42	1.35
46296160--46296197	12	3.0	13	85	14	53	60	2	0	36	1.11
46296150--46296197	12	3.8	14	78	18	52	58	4	2	35	1.29
46301112--46301143	15	2.1	15	100	0	64	68	6	6	18	1.32
46304348--46304513	38	4.4	37	74	6	120	27	22	22	28	1.99
46304371--46304532	38	4.3	38	80	0	164	30	20	22	25	1.99
46306249--46306300	25	2.0	25	85	10	70	36	0	15	48	1.45
46309207--46309251	20	2.2	20	88	0	63	48	2	13	35	1.54
46317729--46317946	46	4.6	48	75	10	184	22	29	20	28	1.98
46329032--46329093	30	2.1	30	90	0	97	24	3	14	58	1.51
46329218--46329251	12	2.9	12	95	4	61	64	0	0	35	0.94
46334520--46334562	16	2.9	15	80	19	54	41	20	0	37	1.53
46346303--46346343	3	13.7	3	100	0	82	34	0	0	65	0.93
46347320--46347348	15	1.9	15	100	0	58	75	3	0	20	0.94
46348205--46348299	50	1.9	50	84	4	129	13	27	14	44	1.83
46360880--46361094	93	2.3	93	95	0	376	27	29	20	21	1.98
46360926--46361098	47	3.7	47	81	10	237	27	29	20	22	1.98
46360872--46361047	46	3.8	46	80	10	214	28	28	21	21	1.98
46374861--46374907	21	2.2	22	92	3	78	21	19	38	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46382288--46382349	19	3.0	20	77	20	65	64	1	0	33	1.03
46386180--46386263	26	3.2	26	96	0	150	35	25	5	33	1.80
46391078--46391154	28	2.8	28	91	0	127	28	27	10	33	1.90
46393500--46393542	18	2.4	18	88	7	61	81	0	16	2	0.79
46393504--46393541	14	2.8	14	88	11	53	81	0	15	2	0.80
46394058--46394123	25	2.6	26	72	13	66	50	1	3	45	1.26
46394141--46394177	18	2.1	18	95	5	67	64	2	0	32	1.07
46394136--46394184	18	2.6	19	75	21	57	65	2	2	30	1.15
46394253--46394308	20	2.8	20	75	2	69	33	5	0	60	1.19
46395029--46395075	18	2.6	18	89	0	67	51	12	6	29	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310