genome.fa.s13.2.7.7.80.10.50.1000.284.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  284  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93459453--93459648	40	4.9	40	86	2	268	26	27	20	25	1.99
93467308--93467445	40	3.5	40	91	3	199	22	28	24	24	2.00
93475809--93475835	12	2.2	12	100	0	54	51	7	0	40	1.30
93476319--93476496	27	6.6	27	83	3	205	26	15	28	29	1.96
93476320--93476475	82	1.9	81	88	3	233	26	15	28	29	1.96
93476316--93476496	82	2.2	81	83	2	229	27	15	27	29	1.96
93485075--93485338	40	6.7	40	89	5	360	25	21	27	25	1.99
93485075--93485371	119	2.5	118	81	9	338	26	21	27	25	1.99
93488405--93488670	94	2.8	94	79	10	269	27	18	29	23	1.98
93488408--93488772	96	3.9	90	78	10	301	27	19	29	24	1.98
93488596--93488766	49	3.5	47	78	8	155	25	19	29	25	1.98
93492245--93492333	29	3.1	29	86	1	126	25	14	30	29	1.95
93500629--93500694	29	2.3	29	91	0	105	24	12	30	33	1.91
93504054--93504123	27	2.6	26	95	2	95	31	28	12	27	1.93
93504054--93504151	28	3.5	28	90	2	135	31	28	13	26	1.94
93504130--93504236	42	2.5	42	98	0	205	29	28	12	29	1.93
93518483--93518588	40	2.7	41	82	5	137	22	27	25	24	2.00
93520391--93520442	26	2.0	26	88	0	77	57	11	5	25	1.55
93529394--93529478	39	2.2	40	82	2	109	23	30	23	22	1.99
93529405--93529502	40	2.5	39	80	8	108	22	30	22	24	1.99
93533620--93533662	20	2.3	18	81	14	52	41	0	20	37	1.53
93533808--93533859	26	2.0	26	100	0	104	42	0	11	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93534341--93534610	49	5.6	49	80	5	259	29	16	28	25	1.97
93534378--93534612	98	2.4	98	87	4	316	28	17	29	24	1.97
93546631--93546685	15	3.7	15	70	18	51	14	16	14	54	1.71
93548170--93548275	42	2.5	42	86	3	124	28	25	16	30	1.96
93548195--93548420	48	4.9	42	74	16	116	32	26	13	26	1.93
93548204--93548440	96	2.6	93	81	10	283	32	27	13	27	1.93
93548239--93548440	48	4.2	48	89	2	289	33	26	12	27	1.92
93553719--93553876	43	3.7	43	78	13	157	25	17	25	31	1.97
93553716--93553881	85	2.0	85	81	9	196	24	16	25	33	1.96
93558153--93558289	43	3.2	42	76	11	127	29	25	19	25	1.99
93558665--93558689	8	3.1	8	100	0	50	24	24	0	52	1.48
93561223--93561400	27	6.6	27	84	3	205	29	28	15	26	1.96
93561244--93561399	82	1.9	81	88	3	233	29	28	15	26	1.96
93569286--93569463	27	6.6	27	84	3	205	29	28	15	26	1.96
93569307--93569462	82	1.9	81	88	3	233	29	28	15	26	1.96
93578563--93578595	13	2.6	13	90	4	50	39	0	12	48	1.40
93583983--93584034	6	9.0	6	83	12	65	17	1	0	80	0.80
93583997--93584063	5	12.8	5	81	12	57	19	4	0	76	0.96
93583983--93584063	12	6.9	11	79	11	74	18	4	0	76	0.96
93583984--93584063	28	2.8	29	81	11	92	18	5	0	76	0.97
93593419--93593504	45	1.9	44	85	2	118	27	15	23	33	1.94
93594974--93595324	173	2.0	173	98	0	684	39	20	3	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93600298--93600328	16	1.9	16	93	0	53	35	22	0	41	1.54
93600295--93600334	20	2.0	20	85	0	53	37	22	0	40	1.54
93600520--93600774	55	4.8	53	82	7	245	21	25	17	35	1.95
93600567--93600764	108	1.8	110	90	4	321	22	25	17	34	1.96
93609001--93609053	25	2.1	25	92	0	88	22	28	28	20	1.99
93614935--93615058	42	2.9	43	81	12	141	33	28	14	24	1.94
93621656--93621827	93	1.8	93	96	0	317	27	29	21	20	1.98
93621648--93621823	46	3.8	46	80	12	225	28	28	21	21	1.98
93625314--93625377	34	1.9	34	87	9	96	59	6	26	7	1.49
93627313--93627460	43	3.5	43	72	11	144	33	22	14	29	1.93
93627291--93627460	43	4.1	41	72	12	139	34	22	13	29	1.93
93636024--93636135	43	2.6	42	84	5	127	33	26	16	24	1.96
93640208--93640259	26	2.0	26	88	0	77	38	30	13	17	1.88
93640288--93640455	46	3.6	46	71	16	150	33	29	16	20	1.94
93640234--93640446	93	2.3	93	88	4	322	32	30	15	21	1.94
93645470--93645522	27	2.0	27	82	14	65	35	15	11	37	1.83
93647907--93648408	256	2.0	256	100	0	1004	30	10	23	35	1.89
93648408--93648486	40	2.0	40	92	0	131	30	18	29	21	1.97
93652464--93652613	67	2.2	67	81	8	171	32	17	28	21	1.96
93652488--93652671	67	2.8	64	77	8	194	29	17	29	22	1.97
93660935--93661076	73	1.9	73	89	0	221	10	18	26	45	1.81
93662423--93662480	27	2.1	27	96	0	107	34	17	13	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93663676--93663834	27	5.9	27	77	10	155	33	22	23	19	1.97
93663694--93663837	54	2.7	54	92	2	227	34	23	23	18	1.96
93665117--93665276	26	6.2	26	95	0	284	35	24	7	32	1.83
93668464--93668601	46	3.1	45	83	12	178	24	30	18	26	1.98
93668795--93668852	30	2.0	28	90	6	89	29	20	10	39	1.86
93671420--93671684	40	6.7	40	85	5	286	26	27	21	24	1.99
93671387--93671684	80	3.7	80	79	9	263	25	27	21	25	1.99
93671616--93671693	40	1.9	41	82	10	97	26	28	20	24	1.99
93685248--93685508	130	2.0	130	94	0	459	37	26	18	17	1.93
93696088--93696159	9	7.3	10	76	17	71	16	1	2	79	0.93
93696077--93696177	6	16.8	6	82	8	125	17	0	3	77	0.98
93698215--93698357	40	3.6	40	92	0	232	23	30	23	23	1.99
93698514--93698605	40	2.3	40	96	0	175	23	30	22	22	1.99
93707406--93707527	46	2.6	47	84	5	147	26	22	14	36	1.93
93707864--93707923	29	2.0	30	83	3	77	30	23	8	38	1.84
93708032--93708069	18	2.1	18	95	0	67	28	7	18	44	1.78
93721412--93721519	43	2.5	43	87	0	135	25	14	24	35	1.94
93724604--93724727	43	2.9	42	72	8	115	30	22	16	29	1.96
93733119--93733180	30	2.1	30	84	0	79	32	22	8	37	1.83
93740598--93740749	27	5.6	27	93	3	232	30	28	13	26	1.94
93740598--93740774	55	3.2	55	90	0	264	31	29	13	25	1.94
93751665--93751729	28	2.3	29	79	10	73	30	20	3	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93753508--93753551	24	1.9	22	86	9	61	45	2	22	29	1.65
93765342--93765389	23	2.1	23	85	11	64	60	18	0	20	1.36
93780879--93781141	39	6.7	40	88	7	337	24	27	22	25	2.00
93789275--93789322	23	2.1	23	85	11	64	18	0	20	60	1.36
93790658--93790824	43	3.9	43	75	9	135	27	15	24	32	1.95
93802375--93802565	40	4.8	40	88	1	258	27	27	20	24	1.99
93802375--93802565	79	2.4	80	87	0	285	27	27	20	24	1.99
93813533--93813690	24	6.6	24	70	7	106	32	29	14	23	1.94
93827193--93827269	38	2.0	38	97	0	145	32	25	19	22	1.97
93828200--93828356	43	3.7	43	81	7	185	31	26	16	26	1.97
93829886--93829932	24	2.0	23	84	8	60	46	2	0	51	1.13
93829870--93829952	37	2.2	37	83	10	98	46	3	0	49	1.19
93829957--93830019	8	7.4	8	73	19	56	31	1	4	61	1.26
93831936--93832012	24	3.2	24	64	10	57	33	19	28	18	1.95
93831925--93832026	49	2.1	49	92	0	168	34	18	27	19	1.95
93831961--93832103	74	1.9	74	83	5	182	36	18	23	22	1.95
93832008--93832120	25	4.5	26	72	11	92	38	16	20	23	1.92
93832202--93832279	24	3.2	23	73	10	66	33	17	32	16	1.93
93832604--93832648	5	8.6	5	85	4	54	37	17	2	42	1.62
93841719--93842389	37	18.6	35	73	10	245	26	20	14	38	1.91
93841923--93842446	75	7.0	74	79	7	483	25	21	15	37	1.93
93841923--93842446	112	4.7	111	77	8	492	25	21	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93841923--93842446	149	3.5	148	79	7	580	25	21	15	37	1.93
93841926--93842446	38	14.0	37	79	9	483	25	21	15	37	1.92
93844907--93844985	39	2.0	39	100	0	158	40	16	10	32	1.82
93850738--93850947	41	5.1	41	77	9	180	36	20	22	20	1.95
93850987--93851060	37	2.0	37	83	0	94	47	29	1	21	1.59
93851717--93851769	17	3.1	17	83	8	63	47	5	3	43	1.45
93851887--93851921	16	2.1	17	94	5	63	25	0	5	68	1.11
93852035--93852363	114	2.9	115	87	5	445	26	17	25	30	1.97
93856080--93856142	33	1.9	33	96	0	117	28	11	25	34	1.90
93858676--93858724	20	2.5	20	96	0	89	16	4	12	67	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310