Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  145  of  310  ( 37082 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47339808--47339968
43
3.7
43
80
11
177
25
16
24
33
1.96
47346410--47346600
48
3.9
49
76
9
185
25
25
19
29
1.98
47346414--47346600
96
1.9
98
86
2
270
25
25
19
29
1.98
47348090--47348151
29
2.1
29
90
0
97
19
29
11
40
1.86
47351587--47351725
43
3.3
41
75
10
120
25
17
25
30
1.97
47357890--47358024
49
2.7
50
81
10
161
27
19
28
24
1.98
47359229--47359268
21
2.0
21
90
5
64
10
40
27
22
1.86
47366975--47367237
48
5.5
47
79
10
250
26
19
29
24
1.98
47367010--47367187
99
1.8
98
88
3
277
26
18
29
25
1.98
47369594--47369776
48
3.8
48
80
0
177
27
26
17
27
1.98
47369562--47369781
96
2.3
96
83
6
266
27
25
16
30
1.97
47371325--47371367
22
2.0
22
95
0
77
34
4
30
30
1.78
47375968--47376006
19
2.1
19
100
0
78
20
5
5
69
1.28
47388348--47388385
7
5.4
7
93
0
67
15
52
0
31
1.43
47391057--47391207
18
7.9
18
67
13
79
37
15
11
34
1.85
47391378--47391408
12
2.6
12
94
0
53
51
9
16
22
1.73
47391388--47391582
45
4.3
45
92
0
291
40
20
20
19
1.92
47391991--47392025
10
3.5
10
88
0
52
31
28
0
40
1.57
47395804--47395927
48
2.5
50
84
7
157
22
33
17
26
1.96
47395910--47395944
17
2.1
17
94
0
61
25
31
20
22
1.98
47395959--47396128
46
3.7
45
77
9
173
22
30
19
27
1.98
47403511--47403732
48
4.6
50
77
12
191
24
30
18
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47403566--47403826
138
1.9
142
80
8
320
23
30
18
27
1.97
47403511--47403875
46
7.7
47
74
11
216
24
30
18
26
1.98
47407087--47407228
10
14.0
10
66
30
72
34
2
0
61
1.15
47407100--47407228
3
40.3
3
69
23
61
34
2
0
62
1.13
47407099--47407229
20
6.8
20
70
20
91
34
2
0
62
1.13
47407087--47407220
32
4.3
30
72
22
98
34
2
0
61
1.16
47407090--47407236
51
2.9
50
77
17
142
34
3
0
61
1.17
47417562--47417609
15
3.1
14
78
21
51
39
2
0
58
1.10
47417844--47417907
16
4.0
16
85
4
85
31
28
1
39
1.66
47417844--47417905
32
1.9
32
93
0
106
32
25
1
40
1.66
47420574--47420694
42
2.9
42
82
2
136
28
23
22
26
1.99
47421078--47421107
15
2.0
15
93
0
51
50
6
3
40
1.45
47423427--47423470
18
2.4
19
88
3
63
47
2
4
45
1.35
47428434--47428565
48
2.8
49
80
5
137
28
19
24
28
1.99
47432729--47432769
16
2.6
16
96
0
73
26
17
31
24
1.97
47436886--47436980
47
2.0
47
84
6
122
23
17
24
34
1.96
47436886--47436989
46
2.2
47
83
5
122
23
18
25
33
1.96
47437098--47437140
22
1.9
23
86
13
63
27
9
11
51
1.69
47439392--47439460
21
3.4
21
71
15
72
36
1
7
55
1.37
47441540--47441584
20
2.2
21
84
11
58
42
0
4
53
1.21
47445694--47445720
7
3.9
7
100
0
54
85
14
0
0
0.61
47447238--47447283
3
15.3
3
100
0
92
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47448312--47448345
13
2.4
14
90
9
52
58
0
2
38
1.13
47449695--47449750
26
2.2
26
83
6
69
8
14
1
75
1.13
47450362--47450485
3
40.3
3
77
7
124
32
4
1
62
1.24
47457184--47457311
64
2.0
64
92
0
211
32
17
13
36
1.88
47457390--47457655
44
6.0
44
66
14
134
30
15
26
27
1.96
47457378--47457907
177
3.0
176
87
1
740
30
17
25
27
1.97
47457736--47457832
44
2.2
45
83
5
126
31
13
21
32
1.92
47457804--47458327
44
12.1
44
75
8
391
30
21
23
25
1.99
47457827--47458327
86
5.8
85
77
6
461
29
21
23
24
1.99
47457821--47458334
130
4.0
130
93
0
857
29
21
23
25
1.99
47457831--47458399
260
2.2
260
87
1
802
30
21
22
26
1.99
47458341--47459077
88
8.4
88
83
3
838
29
22
18
28
1.98
47458507--47458728
44
5.0
43
62
12
101
28
22
20
28
1.98
47458657--47458795
44
3.2
44
68
4
118
28
22
20
29
1.98
47458834--47459063
44
5.2
44
66
8
153
28
25
18
27
1.98
47459050--47459266
51
4.5
49
73
14
177
29
17
23
29
1.97
47459101--47459313
45
4.6
44
74
10
158
29
17
24
28
1.97
47459044--47459276
96
2.4
95
84
4
306
30
17
22
28
1.97
47460006--47460053
21
2.3
20
86
10
69
4
12
0
83
0.79
47460709--47460897
3
62.3
3
74
13
102
30
5
3
60
1.36
47461148--47461197
21
2.4
21
96
0
91
36
14
8
42
1.74
47505232--47505335
29
3.7
28
76
12
97
27
15
33
23
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47505224--47505335
58
2.0
56
84
7
145
29
14
32
24
1.94
47505595--47505651
27
2.2
26
83
3
69
45
19
15
19
1.85
47509575--47509622
19
2.4
20
75
10
53
25
8
37
29
1.85
47509709--47509815
29
3.8
28
79
6
117
28
15
29
25
1.96
47514807--47514874
31
2.2
31
94
2
120
32
25
13
29
1.93
47514807--47514889
31
2.7
31
90
3
116
30
25
14
30
1.95
47515109--47515178
25
2.8
25
95
0
122
24
21
25
28
1.99
47515571--47515626
27
2.1
28
84
15
75
23
25
23
28
1.99
47515673--47515874
54
3.7
54
77
7
194
31
5
18
44
1.74
47515666--47515906
27
8.9
27
77
9
168
31
7
18
42
1.78
47515641--47515874
54
4.3
54
75
7
177
30
7
19
43
1.78
47515752--47515906
81
1.9
80
84
1
202
29
8
18
43
1.79
47515905--47515994
27
3.3
27
88
0
126
42
8
23
25
1.83
47529880--47529965
38
2.2
39
91
2
138
27
17
9
45
1.79
47538710--47538838
28
4.6
28
74
5
116
27
26
16
29
1.97
47538710--47538840
57
2.3
57
81
1
165
27
25
16
30
1.96
47543697--47543743
18
2.6
18
83
6
60
27
12
38
21
1.90
47551316--47551365
26
1.9
26
91
0
82
32
16
10
42
1.81
47553248--47553272
10
2.5
10
100
0
50
8
28
44
20
1.79
47572451--47572509
30
2.0
30
86
6
84
27
33
27
11
1.92
47573590--47573632
21
2.0
21
90
4
68
16
4
4
74
1.16
47576512--47576569
30
1.9
30
82
6
73
17
24
43
15
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47576877--47576928
22
2.5
20
82
11
68
23
0
3
73
1.00
47576963--47577001
17
2.3
18
86
8
55
28
5
0
66
1.12
47576957--47577011
16
3.2
16
82
12
58
27
3
0
69
1.05
47577099--47577129
14
2.2
14
94
0
53
22
0
0
77
0.77
47577099--47577186
6
14.3
6
76
13
54
17
3
3
76
1.07
47577109--47577155
20
2.3
20
82
7
51
17
6
0
76
0.98
47578564--47578925
94
3.9
94
76
7
326
27
19
29
23
1.98
47578564--47578925
141
2.6
139
79
9
337
27
19
29
23
1.98
47578564--47578931
47
7.9
46
72
13
270
28
19
28
23
1.98
47589530--47589561
8
4.0
8
95
0
55
59
28
0
12
1.34
47591059--47591138
29
2.8
29
73
17
76
30
12
28
28
1.93
47595480--47595506
14
1.9
14
100
0
54
33
14
22
29
1.94
47601292--47601336
22
2.0
22
100
0
90
51
13
8
26
1.70
47603640--47603729
46
2.0
46
81
0
108
31
23
18
26
1.98
47609384--47609444
27
2.3
27
82
0
68
31
16
22
29
1.96
47611491--47611718
113
2.0
113
100
0
456
42
21
4
31
1.72
47626561--47626708
43
3.4
43
72
5
147
27
17
25
30
1.97
47629570--47629604
19
1.9
18
88
11
54
42
17
0
40
1.49
47633309--47633488
46
3.9
46
82
7
213
22
30
17
29
1.97
47633320--47633488
94
1.8
92
86
7
243
23
29
17
29
1.97
47636843--47637080
118
2.0
118
94
0
413
33
25
12
28
1.92
47640993--47641213
50
4.7
47
75
14
154
24
29
19
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47642690--47642731
22
1.9
22
85
0
57
28
9
7
54
1.59
47645815--47645850
12
3.0
12
83
0
54
52
19
19
8
1.70
47650510--47650612
44
2.3
45
80
5
111
27
20
24
28
1.99
47650372--47650784
173
2.4
174
84
3
526
27
20
26
25
1.99
47651801--47651965
39
4.2
39
91
0
249
28
27
22
21
1.99
47654380--47654643
44
6.0
44
70
6
174
29
16
26
27
1.97
47654337--47654953
177
3.5
177
90
1
907
29
17
26
27
1.97
47654765--47655126
133
2.7
132
84
5
460
28
18
25
27
1.98
47655533--47655564
16
1.9
17
93
6
57
68
12
0
18
1.20
47657841--47658103
40
6.6
40
88
3
325
24
20
27
26
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310