genome.fa.s13.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  97  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31128176--31128353	76	2.3	76	85	5	243	30	17	20	32	1.95
31128660--31128701	21	2.0	21	86	9	59	26	2	28	42	1.67
31128711--31128745	15	2.4	14	90	4	52	20	0	34	45	1.51
31128750--31128797	21	2.2	22	78	14	55	18	0	35	45	1.50
31128965--31129059	7	13.4	7	68	10	50	24	0	26	49	1.50
31129227--31129295	29	2.4	29	100	0	138	39	2	2	55	1.30
31129627--31129700	7	8.9	8	77	18	55	64	2	0	32	1.07
31129659--31129686	7	4.0	7	100	0	56	71	0	0	28	0.86
31129660--31129693	15	2.4	14	90	5	50	73	2	0	23	0.97
31129849--31129947	42	2.3	43	82	5	130	44	15	15	25	1.85
31134304--31134445	43	3.4	42	73	6	117	26	13	27	33	1.93
31134414--31134528	42	2.7	42	81	2	124	26	14	27	31	1.95
31140091--31140157	27	2.5	27	97	2	127	20	32	22	23	1.98
31144904--31144944	16	2.6	16	96	0	73	29	24	7	39	1.82
31163212--31163300	42	2.1	44	87	8	130	48	1	7	42	1.39
31163266--31163310	18	2.5	18	82	7	56	48	0	0	51	1.00
31166783--31166821	19	2.1	19	85	0	51	56	0	5	38	1.22
31177924--31178956	258	4.0	258	100	0	2066	40	16	10	32	1.83
31187421--31187458	18	2.1	18	100	0	76	57	10	10	21	1.61
31193030--31193074	22	2.0	22	87	8	65	35	2	15	46	1.58
31198445--31198475	5	6.2	5	100	0	62	80	0	0	19	0.71
31201042--31201080	19	2.1	19	95	0	69	25	12	28	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31207417--31207448	16	1.9	16	93	6	55	6	68	0	25	1.12
31207523--31207566	24	1.9	22	86	9	61	13	52	0	34	1.41
31218980--31219015	3	12.3	3	94	5	65	0	30	0	69	0.89
31219457--31220291	421	2.0	418	95	1	1510	42	7	17	31	1.77
31224827--31224859	17	2.0	17	88	5	50	45	3	18	33	1.65
31235260--31235316	28	2.0	28	82	0	69	33	21	7	38	1.80
31235896--31235942	23	2.0	23	84	8	60	65	14	19	0	1.26
31236340--31236441	36	2.7	38	80	13	111	25	16	21	36	1.94
31237167--31237209	21	2.1	20	82	4	50	39	0	18	41	1.51
31238575--31238614	21	1.9	21	85	10	55	30	0	10	60	1.30
31242637--31242677	6	6.8	6	100	0	82	14	68	0	17	1.22
31246751--31246797	22	2.1	22	100	0	94	42	17	19	21	1.89
31250233--31250442	105	2.0	105	99	0	411	41	9	16	32	1.80
31250255--31250476	105	2.1	104	88	3	311	45	7	15	31	1.75
31254670--31254752	41	2.0	41	97	0	157	32	9	33	24	1.88
31255288--31257377	383	5.5	383	99	0	4089	32	13	17	36	1.88
31261196--31261251	19	3.1	18	72	23	55	39	1	3	55	1.28
31261365--31261417	21	2.5	21	84	0	70	32	35	7	24	1.84
31266761--31266826	24	2.6	25	83	7	89	54	15	16	13	1.71
31267439--31267469	16	2.0	16	93	6	55	41	0	6	51	1.27
31268615--31268680	13	5.5	13	70	26	65	48	12	0	39	1.40
31268616--31268689	23	3.2	23	98	0	139	48	9	0	41	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31279855--31279892	20	1.9	20	84	10	51	42	13	23	21	1.88
31281802--31282075	46	6.0	46	92	0	415	38	14	24	22	1.91
31284860--31284913	25	2.1	26	89	6	83	50	12	0	37	1.41
31286150--31286188	15	2.6	15	84	11	53	25	25	7	41	1.82
31286367--31286453	29	2.9	29	79	8	95	43	18	13	24	1.86
31286363--31286468	30	3.6	29	77	8	106	42	17	14	25	1.87
31286958--31287014	28	2.0	28	100	0	114	33	14	10	42	1.79
31293288--31293409	43	2.9	42	82	11	167	31	14	25	27	1.95
31296907--31296958	25	2.1	25	96	0	95	21	21	19	38	1.94
31303394--31303438	18	2.5	18	81	0	54	40	26	6	26	1.81
31304594--31304641	21	2.3	21	85	0	60	27	18	35	18	1.95
31305277--31305304	6	4.7	6	100	0	56	35	0	64	0	0.94
31308296--31308530	48	4.9	47	80	5	231	30	16	27	25	1.97
31308349--31308531	98	1.9	97	87	2	269	30	17	28	24	1.97
31309677--31309760	38	2.2	38	89	4	134	16	27	32	23	1.96
31312780--31312937	43	3.7	43	78	8	169	28	15	23	32	1.95
31319592--31320004	46	9.0	46	93	0	648	36	15	24	23	1.93
31323956--31324099	45	3.2	45	82	2	162	18	18	16	47	1.83
31323964--31324083	46	2.6	46	86	1	161	17	18	14	50	1.79
31324147--31324264	45	2.6	45	82	0	128	19	15	16	48	1.81
31327373--31327438	19	3.4	18	72	17	53	37	10	3	48	1.53
31327354--31327427	38	1.9	38	91	0	121	37	8	4	50	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31327365--31327498	20	6.9	20	69	19	79	41	8	4	45	1.54
31327467--31327500	10	3.4	10	83	0	50	44	5	0	50	1.26
31335855--31335914	30	2.0	30	100	0	120	33	3	26	36	1.73
31340473--31340526	19	2.9	19	76	17	51	61	3	3	31	1.31
31340819--31340881	20	3.0	22	75	11	62	26	0	7	65	1.20
31341483--31341552	19	3.7	18	70	14	52	65	2	7	24	1.31
31341821--31341879	20	3.0	20	72	18	61	44	0	6	49	1.29
31341822--31341872	19	2.7	19	79	8	59	41	0	7	50	1.31
31342166--31342205	21	1.9	21	85	10	55	30	22	0	47	1.52
31343356--31343401	23	2.0	23	95	0	83	21	21	2	54	1.56
31361289--31361326	18	2.1	18	100	0	76	44	5	10	39	1.61
31362955--31362979	13	1.9	13	100	0	50	24	28	48	0	1.52
31364924--31364963	19	2.1	19	90	0	62	30	10	25	35	1.88
31369829--31369867	13	3.0	13	88	0	60	12	28	33	25	1.93
31375101--31375140	18	2.2	18	90	0	62	15	15	17	52	1.75
31378432--31378468	19	1.9	20	88	5	58	54	8	2	35	1.44
31378852--31378894	22	2.0	22	81	9	52	39	2	0	58	1.11
31379817--31379846	14	2.1	14	100	0	60	50	6	13	30	1.67
31387130--31387159	3	10.0	3	100	0	60	66	0	0	33	0.92
31388344--31388397	22	2.5	22	91	5	85	35	0	3	61	1.14
31397903--31398258	21	17.0	21	77	2	356	44	12	22	20	1.85
31397905--31398258	84	4.2	84	95	1	595	44	12	22	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31401644--31401669	5	5.2	5	100	0	52	80	0	0	19	0.71
31402321--31402370	24	2.1	24	88	7	75	60	14	0	26	1.34
31403757--31403786	15	2.0	15	93	0	51	43	0	13	43	1.43
31404834--31404867	13	2.5	13	85	4	50	38	0	14	47	1.45
31410571--31410657	42	2.2	39	76	15	88	49	2	3	44	1.31
31410721--31410750	16	1.9	15	93	6	51	73	0	26	0	0.84
31414227--31414344	42	2.8	42	79	5	105	28	18	23	28	1.98
31416878--31417346	46	9.9	47	77	8	303	28	20	28	22	1.98
31416984--31417289	94	3.2	94	84	4	328	28	19	29	22	1.98
31417109--31417346	49	4.9	49	80	6	227	28	19	28	22	1.98
31416884--31417346	94	4.9	95	78	7	315	28	20	28	22	1.99
31421487--31421597	42	2.6	42	81	2	125	29	16	23	30	1.96
31431057--31431094	19	2.0	19	85	10	51	68	0	10	21	1.19
31435501--31435534	18	1.9	18	88	5	52	35	2	5	55	1.39
31435502--31435591	44	2.0	44	89	0	135	37	7	4	50	1.52
31439140--31439170	16	1.9	16	93	0	53	64	3	3	29	1.25
31439420--31439472	22	2.4	22	81	6	54	56	3	1	37	1.28
31439630--31439706	39	2.1	38	80	9	88	31	0	3	64	1.11
31442816--31442841	13	2.0	13	100	0	52	38	23	15	23	1.92
31445566--31445681	58	2.0	58	98	0	223	32	19	17	30	1.95
31448052--31448117	21	3.1	21	83	12	73	1	48	19	30	1.58
31448532--31448560	14	2.1	14	93	6	51	58	6	0	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31454329--31454353	12	2.1	12	100	0	50	32	28	8	32	1.86
31456243--31456681	102	4.2	103	90	5	641	56	4	5	33	1.41
31456243--31456680	206	2.1	211	89	6	683	56	4	5	34	1.41
31458120--31458170	26	2.0	26	85	7	70	56	1	1	39	1.22
31459767--31459837	28	2.5	29	80	15	85	42	30	0	26	1.56
31459804--31459844	21	2.0	21	95	0	73	39	34	0	26	1.57
31459811--31459856	20	2.2	21	88	3	67	41	32	0	26	1.56
31459843--31459969	34	3.4	34	67	22	101	45	28	3	22	1.68
31459827--31460032	80	2.6	80	95	1	360	44	27	3	24	1.70
31460087--31460136	21	2.4	21	90	3	75	40	36	0	24	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310