genome.fa.s13.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  116  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37206707--37206751	23	1.9	24	90	4	74	35	4	20	40	1.72
37208104--37208195	46	2.0	46	100	0	184	34	21	4	39	1.73
37208721--37208920	103	1.9	104	87	3	296	30	17	5	47	1.70
37210904--37211009	41	2.5	44	89	9	182	38	9	5	46	1.60
37212359--37212416	25	2.4	25	82	8	75	50	1	3	44	1.29
37213440--37213527	29	3.0	29	75	6	86	39	13	12	34	1.83
37214141--37214175	18	1.9	18	88	0	52	42	0	2	54	1.15
37215116--37215151	11	3.4	10	88	11	54	50	0	0	50	1.00
37218420--37218573	84	1.8	84	91	0	254	31	16	7	43	1.77
37222086--37222126	21	2.0	21	90	0	64	29	21	29	19	1.98
37235910--37235952	21	2.0	21	82	8	52	2	20	16	60	1.46
37246139--37246172	18	1.9	18	88	5	52	64	11	11	11	1.50
37248282--37248340	20	3.0	20	83	14	70	38	1	1	57	1.19
37248282--37248340	19	3.0	19	87	9	75	38	1	1	57	1.19
37248298--37248354	29	1.9	29	85	3	78	40	0	1	57	1.09
37251593--37251628	3	12.0	3	100	0	72	33	0	0	66	0.92
37258759--37258856	26	3.8	26	83	2	117	35	4	21	38	1.73
37258759--37258860	52	2.0	52	92	0	168	35	3	20	40	1.71
37259584--37259618	17	2.1	17	100	0	70	42	11	22	22	1.85
37261647--37261683	18	2.0	19	89	5	58	37	0	2	59	1.12
37261640--37261708	29	2.5	28	77	11	72	44	0	1	53	1.09
37265645--37265679	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37265640--37265948	156	2.0	156	95	0	555	46	5	3	43	1.46
37265801--37265849	15	2.9	18	80	20	61	44	0	2	53	1.12
37265801--37265855	15	3.4	16	80	16	53	43	0	3	52	1.18
37266000--37266090	45	2.0	45	85	2	121	37	28	6	27	1.82
37266071--37266139	16	4.2	16	90	3	111	34	37	1	26	1.65
37273360--37273403	19	2.3	19	92	0	70	68	13	2	15	1.31
37274722--37274767	24	1.9	24	86	0	65	34	0	2	63	1.07
37286829--37287341	172	2.9	176	85	3	660	29	18	22	29	1.97
37287546--37287575	15	2.0	15	100	0	60	73	13	0	13	1.10
37288882--37288954	28	2.6	29	72	8	80	35	6	2	54	1.41
37294368--37294479	23	4.9	23	72	8	95	28	16	25	30	1.96
37294409--37294501	45	2.0	46	85	4	125	31	17	24	26	1.97
37294439--37294501	24	2.7	24	80	2	74	31	20	23	23	1.98
37300582--37300614	17	1.9	18	88	11	52	45	0	12	42	1.41
37308777--37308826	25	2.0	24	88	3	73	38	6	0	56	1.24
37308775--37308818	15	2.8	15	78	21	54	38	2	0	59	1.10
37308837--37308896	21	2.8	20	75	18	59	31	5	3	60	1.35
37316464--37316492	14	2.1	14	100	0	58	34	13	0	51	1.42
37317484--37317566	42	2.0	43	82	2	105	50	7	3	38	1.47
37326754--37326797	23	2.0	21	86	8	61	72	15	2	9	1.19
37330461--37330505	18	2.5	18	85	7	65	40	0	42	17	1.50
37343340--37343376	2	18.5	2	100	0	74	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37356531--37356642	9	12.3	9	71	9	66	53	2	10	33	1.50
37356534--37356601	35	1.9	36	84	3	93	54	1	10	33	1.43
37356780--37356953	3	56.3	3	67	14	63	59	5	4	29	1.41
37357049--37357118	30	2.4	28	76	19	72	61	1	4	32	1.24
37357759--37357787	15	2.0	15	93	6	51	13	0	27	58	1.36
37358045--37358342	68	4.4	68	89	1	422	27	23	23	25	2.00
37358451--37359229	87	9.0	87	89	1	1060	20	22	20	35	1.96
37359222--37359484	132	2.0	132	90	0	418	27	22	17	32	1.96
37359320--37359839	88	5.9	88	75	7	403	26	23	18	31	1.97
37359242--37359707	220	2.1	220	92	0	763	27	22	18	32	1.97
37359255--37359839	220	2.7	218	84	4	662	27	22	18	31	1.97
37359462--37359978	132	3.9	132	93	0	809	26	23	18	31	1.97
37360003--37360212	88	2.4	88	95	0	357	29	27	17	26	1.98
37359564--37360062	264	1.9	263	82	2	610	27	24	17	30	1.97
37360053--37360196	47	3.2	47	64	22	126	27	29	18	25	1.98
37362057--37362127	8	8.8	8	78	9	56	4	4	7	84	0.86
37362057--37362128	9	7.7	9	77	13	56	4	4	6	84	0.85
37372007--37372311	153	2.0	153	90	2	479	36	17	6	39	1.76
37372238--37372365	67	1.9	67	88	0	193	33	17	7	41	1.78
37372384--37372429	22	2.0	22	87	4	65	45	19	2	32	1.62
37372697--37372738	22	2.0	22	95	4	77	42	11	2	42	1.54
37372718--37372934	93	2.3	94	82	3	249	35	17	6	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37373044--37373086	21	2.0	21	82	8	52	37	9	6	46	1.63
37373294--37373377	44	1.9	44	97	2	161	36	15	2	45	1.59
37381188--37381258	36	2.0	36	100	0	142	32	33	11	22	1.90
37382853--37382903	26	1.9	27	84	11	70	56	9	0	33	1.32
37384186--37384236	26	1.9	27	84	11	70	56	9	0	33	1.32
37385573--37385610	20	2.0	20	84	5	51	52	2	0	44	1.14
37385865--37385910	21	2.3	19	78	10	56	39	2	0	58	1.10
37386393--37386430	14	2.5	16	83	8	53	60	2	0	36	1.11
37387266--37387294	3	9.7	3	100	0	58	34	0	0	65	0.93
37389040--37389067	5	5.6	5	100	0	56	17	0	0	82	0.68
37392953--37392989	5	7.6	5	96	3	67	18	0	0	81	0.70
37395526--37395587	27	2.3	26	76	13	63	38	1	11	48	1.49
37401248--37401424	89	2.0	89	96	0	327	35	14	16	33	1.89
37401692--37401762	7	10.0	7	80	15	67	21	4	0	74	0.98
37401685--37401741	30	1.9	30	100	0	114	17	7	0	75	1.02
37401679--37401749	37	1.9	36	94	2	124	16	7	0	76	1.00
37402976--37403017	1	42.0	1	85	0	57	92	0	4	2	0.44
37402954--37402993	21	1.9	21	84	0	53	77	0	0	22	0.77
37404727--37404783	23	2.6	21	83	5	69	15	12	22	49	1.78
37411090--37411122	6	5.3	6	96	3	57	81	0	3	15	0.80
37419438--37419521	41	2.0	41	97	0	159	39	17	9	33	1.82
37419844--37419884	18	2.3	18	100	0	82	51	4	7	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37420642--37420703	30	2.0	30	84	12	81	32	1	3	62	1.20
37428142--37428260	3	38.3	3	67	21	59	32	3	1	62	1.22
37428151--37428265	47	2.5	46	81	12	123	32	3	2	61	1.26
37428665--37428720	17	3.2	18	78	14	64	35	1	0	62	1.06
37428654--37428726	17	4.6	16	75	9	60	38	1	0	60	1.06
37428663--37428726	31	2.1	31	83	13	80	39	1	0	59	1.07
37432424--37432454	14	2.1	15	94	5	55	38	6	3	51	1.44
37440158--37440913	205	3.7	205	92	0	1208	31	18	21	28	1.97
37440162--37440913	411	1.8	411	90	1	1229	31	18	21	28	1.97
37442542--37442670	7	18.1	7	73	17	70	33	3	3	60	1.28
37442535--37442835	19	15.6	19	66	24	84	31	2	3	61	1.27
37442544--37442592	15	3.2	16	86	13	68	36	0	0	63	0.95
37442680--37442728	17	2.8	17	84	12	64	38	0	4	57	1.18
37442766--37442887	3	39.3	3	69	21	65	33	2	1	62	1.18
37442565--37442940	30	12.1	30	67	20	163	31	3	3	61	1.30
37456480--37456517	19	2.0	19	100	0	76	52	5	0	42	1.24
37463456--37463507	22	2.3	23	74	9	54	59	1	1	36	1.19
37463432--37463627	97	2.0	97	89	0	302	46	3	2	47	1.31
37463927--37463958	13	2.3	15	89	10	50	62	0	9	28	1.26
37464532--37464567	3	12.0	3	100	0	72	33	0	0	66	0.92
37466790--37466840	26	2.0	26	92	0	84	37	3	25	33	1.74
37466991--37467106	9	12.7	9	72	21	82	60	0	3	35	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37467568--37467601	11	3.0	12	87	12	54	32	0	0	67	0.91
37467824--37467863	11	3.6	11	79	0	53	55	10	15	20	1.68
37470768--37470814	18	2.6	17	75	18	51	34	4	2	59	1.29
37471188--37471450	141	1.9	141	88	1	402	18	18	8	54	1.68
37478815--37478854	19	2.1	19	95	0	71	32	25	10	32	1.89
37485717--37485904	95	2.0	95	93	0	322	27	23	25	23	2.00
37491597--37491642	23	2.0	22	88	12	67	36	4	10	47	1.58
37491852--37491933	40	2.0	40	100	0	164	34	21	7	36	1.82
37493565--37493723	60	2.7	60	76	5	142	36	26	22	15	1.93
37495087--37495113	5	5.4	5	100	0	54	81	0	0	18	0.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310