genome.fa.s13.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  139  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45177462--45177524	32	2.0	32	90	0	99	26	23	14	34	1.93
45179349--45179404	28	2.0	29	82	3	69	26	16	7	50	1.70
45179583--45179711	43	3.0	43	76	13	131	33	24	17	24	1.97
45182623--45182653	10	3.1	10	95	0	53	22	0	6	70	1.09
45182801--45183041	49	4.9	49	82	4	286	24	18	27	29	1.98
45182905--45182988	28	3.2	27	65	25	72	23	17	29	28	1.97
45186105--45186135	16	1.9	16	93	0	53	35	22	0	41	1.54
45186102--45186141	20	2.0	20	85	0	53	37	22	0	40	1.54
45186135--45186174	20	2.0	20	95	0	71	45	12	0	42	1.42
45186405--45186599	55	3.6	52	81	6	194	22	24	17	35	1.95
45193418--45193603	56	3.3	56	88	0	255	28	14	22	34	1.93
45195663--45195714	25	2.1	24	85	3	68	40	9	25	25	1.85
45196538--45196741	44	4.7	45	79	7	210	33	25	16	24	1.96
45208182--45208319	40	3.5	40	86	3	181	26	23	26	23	2.00
45216027--45216061	18	1.9	18	94	0	61	45	14	20	20	1.85
45216386--45216503	27	4.4	27	79	2	121	41	18	16	23	1.89
45236421--45236500	15	5.4	15	76	7	74	13	16	10	60	1.59
45238861--45238988	29	4.5	28	86	2	166	32	26	12	28	1.93
45238860--45238988	57	2.3	57	86	2	179	31	27	12	28	1.93
45244845--45244963	27	4.4	27	86	0	148	34	18	20	26	1.96
45245682--45245745	33	2.0	32	84	3	83	20	23	20	35	1.96
45245596--45245739	73	2.1	67	83	7	171	20	26	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45245707--45245766	27	2.3	26	85	2	75	21	23	20	35	1.96
45247074--45247185	27	4.2	26	83	7	116	40	24	22	13	1.89
45248614--45248684	24	3.0	24	95	0	124	25	38	1	35	1.65
45254949--45255060	27	4.1	27	82	10	131	38	24	23	14	1.92
45254949--45255060	54	2.1	54	85	6	147	38	24	23	14	1.92
45263269--45263441	27	6.4	27	88	0	238	35	19	20	24	1.95
45264150--45264211	27	2.3	26	81	8	70	20	22	22	33	1.97
45282369--45282546	27	6.6	27	83	3	205	26	15	28	29	1.96
45282370--45282525	82	1.9	81	88	3	233	26	15	28	29	1.96
45282366--45282546	82	2.2	81	83	2	229	27	15	27	29	1.96
45287868--45287987	47	2.6	45	80	11	127	30	18	28	23	1.98
45289368--45289406	21	1.9	21	89	5	62	15	35	28	20	1.93
45291389--45291490	43	2.4	43	85	3	134	29	16	22	31	1.96
45291880--45292049	75	2.3	75	88	2	252	23	32	20	23	1.97
45293729--45293827	49	2.0	49	94	3	173	34	36	11	18	1.86
45299241--45299420	35	5.1	35	77	3	130	41	17	11	30	1.84
45299265--45299420	35	4.5	35	77	1	143	43	16	9	30	1.80
45314716--45314779	28	2.3	28	94	0	110	21	15	34	28	1.94
45315103--45315541	27	16.4	27	81	5	410	39	20	9	30	1.84
45316043--45316110	27	2.6	27	95	2	120	25	23	30	20	1.98
45317422--45317601	35	5.1	35	78	2	164	41	18	11	29	1.85
45334173--45334290	27	4.5	26	86	7	166	39	17	9	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45334170--45334317	26	5.6	25	80	10	145	40	18	9	31	1.82
45334173--45334319	52	2.8	53	86	6	174	40	18	9	31	1.83
45334299--45334559	27	9.7	27	85	0	326	31	19	22	26	1.97
45334766--45334824	26	2.2	27	85	8	77	16	22	22	38	1.93
45340518--45340637	47	2.6	47	100	0	240	22	19	30	28	1.98
45341621--45341729	37	2.9	37	95	0	191	26	31	19	22	1.98
45341879--45342025	50	3.0	50	92	3	235	30	24	7	37	1.83
45341984--45342175	47	4.1	47	89	1	271	26	29	11	32	1.92
45346680--45346723	15	2.9	15	80	12	54	11	15	15	56	1.66
45349120--45349292	47	3.7	47	88	6	246	23	19	28	28	1.98
45354043--45354266	48	4.7	48	89	1	317	24	16	31	28	1.96
45361829--45362107	48	5.8	48	86	2	364	25	16	28	29	1.97
45369637--45369775	43	3.3	43	78	2	145	32	27	17	23	1.96
45371209--45371352	43	3.4	44	69	14	122	25	18	25	30	1.98
45371533--45371576	19	2.3	18	84	7	52	47	2	15	34	1.58
45373741--45373801	30	2.0	30	87	0	86	37	8	24	29	1.84
45389530--45389575	24	1.9	24	100	0	92	28	17	41	13	1.86
45392376--45392408	13	2.6	13	90	4	50	48	12	0	39	1.40
45422127--45423084	47	20.4	47	98	0	1799	31	8	31	28	1.86
45424276--45424309	18	1.9	18	88	5	52	29	17	11	41	1.85
45427034--45427205	93	1.8	93	93	0	299	27	29	22	20	1.99
45427027--45427202	46	3.8	46	77	12	198	28	28	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45427035--45427221	46	4.0	45	72	18	134	28	28	21	21	1.98
45429336--45429363	8	3.5	8	100	0	56	28	0	32	39	1.57
45430309--45430349	6	6.8	6	88	0	55	78	2	4	14	1.03
45437533--45437758	40	5.7	40	92	2	312	23	22	28	25	1.99
45445540--45445765	40	5.7	40	91	4	307	25	22	26	25	2.00
45457321--45457458	40	3.5	40	87	6	176	23	28	23	23	2.00
45459342--45459423	43	1.9	42	85	2	110	28	18	21	31	1.97
45460856--45460881	13	2.0	13	100	0	52	15	30	38	15	1.88
45461980--45462036	21	2.7	19	75	17	51	24	7	1	66	1.26
45464953--45465059	55	1.9	55	81	3	126	30	29	27	12	1.92
45467073--45467106	9	3.8	9	88	11	52	23	0	0	76	0.79
45472753--45472822	27	2.6	27	95	2	113	31	28	12	27	1.93
45472753--45472850	28	3.5	28	90	2	135	31	28	13	26	1.94
45474507--45474659	43	3.6	43	78	6	150	28	16	24	30	1.97
45478510--45478556	24	2.0	23	87	4	67	34	25	21	19	1.96
45493432--45493649	40	5.5	40	91	2	307	22	23	28	24	2.00
45501515--45501569	28	2.0	28	96	0	101	18	23	29	29	1.98
45501556--45502374	40	20.5	40	99	0	1588	22	22	27	27	1.99
45508179--45508211	12	2.6	13	85	9	50	9	45	0	45	1.35
45509085--45509149	28	2.3	28	91	0	103	32	27	9	30	1.88
45509256--45509344	28	3.1	28	85	1	106	22	23	21	32	1.98
45515776--45515808	12	2.6	13	85	9	50	9	45	0	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45516640--45516704	28	2.3	28	91	0	103	32	27	9	30	1.88
45516717--45516795	40	2.0	40	97	0	149	35	8	21	34	1.85
45516850--45516937	28	3.1	28	90	4	133	21	25	21	31	1.98
45556501--45556633	47	2.8	47	91	0	212	34	7	30	27	1.85
45557832--45557865	18	1.9	18	88	5	52	29	17	11	41	1.85
45558984--45559077	28	3.3	29	88	2	129	31	29	12	25	1.93
45562092--45562257	43	3.9	43	83	4	228	28	13	24	34	1.93
45562094--45562345	131	2.0	127	81	6	292	27	14	23	34	1.94
45565180--45565217	19	2.0	19	100	0	76	42	0	10	47	1.38
45566361--45566532	48	3.6	48	88	0	236	25	18	30	26	1.98
45577209--45577375	43	3.9	43	75	9	153	25	15	23	35	1.94
45582371--45582408	20	1.9	20	88	0	58	28	2	34	34	1.71
45582370--45582414	20	2.3	19	81	11	54	28	2	35	33	1.70
45588340--45588546	53	3.8	53	74	5	182	39	16	23	20	1.92
45594014--45594151	55	2.5	54	75	1	132	37	20	21	21	1.94
45594008--45594214	53	3.8	53	75	3	189	37	17	23	21	1.94
45601125--45601174	26	2.0	26	88	4	75	52	6	0	42	1.26
45601248--45601340	44	2.1	45	83	4	116	35	23	6	34	1.81
45601322--45601392	16	4.4	16	85	3	90	28	26	7	38	1.82
45602396--45602428	17	1.9	17	100	0	66	18	18	36	27	1.94
45610685--45610756	30	2.4	31	88	4	110	40	8	13	37	1.75
45613405--45613468	33	2.0	33	84	9	87	28	26	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45621487--45621586	43	2.3	43	91	3	157	33	19	16	32	1.93
45627983--45628051	29	2.4	29	82	2	77	37	7	8	46	1.63
45631056--45631177	43	2.9	42	81	7	165	27	25	16	31	1.96
45633113--45633234	43	2.9	42	81	7	165	27	25	16	31	1.96
45634948--45635118	83	2.1	83	93	0	288	30	18	25	25	1.98
45636066--45636162	25	3.9	25	72	6	72	35	19	24	20	1.96
45636709--45636747	5	7.6	5	82	5	51	41	17	0	41	1.50
45642310--45642365	29	2.0	29	85	3	78	25	3	3	67	1.22
45645313--45645346	16	2.1	16	88	0	50	41	11	14	32	1.82
45648689--45648736	24	2.0	24	91	0	78	43	6	31	18	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310