genome.fa.s13.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  37  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10434135--10434184	24	2.1	24	96	0	91	24	16	8	52	1.70
10438923--10440070	49	23.6	49	96	1	2109	32	8	28	29	1.87
10440189--10440290	37	2.8	37	93	0	168	25	18	29	26	1.98
10448795--10448876	28	2.9	28	87	0	119	35	10	25	28	1.90
10448798--10448889	28	3.3	28	84	0	112	36	10	23	28	1.89
10451156--10451218	32	2.0	32	90	3	101	20	36	26	15	1.93
10451758--10451885	55	2.3	55	81	12	145	33	3	2	60	1.28
10451840--10451906	23	2.8	24	77	11	75	31	2	1	64	1.18
10454863--10454937	37	2.0	37	92	0	123	36	33	17	13	1.88
10461492--10462495	44	22.8	44	89	0	1522	29	13	26	29	1.94
10461492--10462495	88	11.4	88	98	0	1864	29	13	26	29	1.94
10470493--10470569	28	2.8	28	83	0	109	32	11	25	29	1.91
10482044--10482070	6	4.5	6	100	0	54	44	0	0	55	0.99
10487587--10487774	27	7.0	27	82	3	209	25	19	18	37	1.94
10487588--10487774	81	2.3	82	83	10	235	25	18	18	37	1.93
10491158--10491187	13	2.2	14	94	5	53	26	13	13	46	1.80
10494130--10494890	206	3.7	206	90	1	1159	28	22	18	31	1.97
10506108--10506239	40	3.3	40	85	5	169	28	27	20	23	1.99
10506309--10506403	40	2.4	40	87	0	127	30	28	17	23	1.97
10506150--10506468	164	1.9	164	99	0	629	33	25	14	26	1.94
10513822--10514667	43	19.7	43	98	0	1637	25	30	23	21	1.99
10520264--10520349	43	2.0	43	95	0	154	20	18	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10524142--10524195	27	2.0	27	85	0	72	38	7	14	38	1.75
10524441--10524687	49	5.0	50	81	3	275	25	18	26	29	1.98
10527165--10527240	40	1.9	40	83	5	100	34	22	14	28	1.93
10530662--10530764	42	2.4	42	79	10	111	27	26	20	26	1.99
10544236--10544394	43	3.7	43	72	9	146	27	17	25	29	1.98
10578084--10578181	51	1.9	51	95	0	178	39	21	12	26	1.88
10581590--10581647	28	2.1	27	84	6	73	34	3	20	41	1.69
10581598--10581658	28	2.2	28	96	0	113	32	6	21	39	1.79
10585481--10585538	21	2.7	22	79	10	68	32	22	12	32	1.91
10587159--10588603	716	2.0	716	99	0	2863	28	27	15	28	1.96
10593745--10593796	25	2.1	25	82	3	61	28	19	21	30	1.97
10593842--10593884	21	2.2	20	87	8	61	30	16	16	37	1.91
10595746--10595783	19	2.0	20	89	5	60	47	15	0	36	1.46
10605415--10605465	24	2.2	23	85	3	66	78	3	1	15	0.99
10612774--10612818	22	2.0	23	83	12	58	31	0	4	64	1.13
10614471--10614522	9	5.6	9	81	4	50	61	1	0	36	1.07
10614491--10614525	19	1.9	19	88	11	56	57	2	0	40	1.14
10614584--10614626	21	2.0	21	81	0	50	27	4	4	62	1.35
10623810--10623871	20	3.0	19	73	17	52	67	3	1	27	1.15
10625094--10625586	174	2.8	175	92	0	844	25	19	20	34	1.96
10625137--10625878	86	8.6	86	71	13	511	25	19	21	33	1.97
10625311--10625878	259	2.2	260	89	2	856	25	19	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10626770--10626845	39	1.9	39	94	0	134	25	19	10	44	1.82
10631722--10631778	28	2.0	28	100	0	114	14	17	24	43	1.86
10633964--10633996	14	2.2	16	89	10	52	45	12	21	21	1.84
10638101--10638162	20	3.0	19	73	17	52	67	3	1	27	1.15
10639340--10639428	38	2.3	38	86	7	119	35	16	16	30	1.92
10641535--10641604	32	2.2	32	97	0	131	31	15	7	45	1.73
10642497--10642547	25	2.0	25	84	0	66	15	7	15	60	1.56
10644482--10644518	14	2.6	15	87	8	51	32	10	2	54	1.49
10644483--10644529	14	3.4	15	81	18	50	25	10	4	59	1.49
10645371--10645469	50	2.0	50	89	0	153	31	5	16	47	1.68
10649007--10649067	30	2.0	30	83	0	77	21	32	27	18	1.96
10649436--10649474	13	3.1	12	82	10	51	17	7	10	64	1.48
10650154--10650196	11	4.0	11	75	6	52	16	2	4	76	1.05
10651456--10651556	50	2.0	52	82	5	125	60	3	7	27	1.43
10651531--10651573	18	2.4	18	84	0	59	55	2	11	30	1.48
10651597--10651656	25	2.4	24	76	18	59	56	6	5	31	1.47
10652235--10652272	3	12.7	3	100	0	76	65	0	0	34	0.93
10656442--10656498	30	1.9	30	92	0	96	17	31	38	12	1.87
10656249--10656665	199	2.1	199	94	0	726	24	23	31	19	1.98
10656870--10656911	9	4.6	9	83	16	59	26	0	0	73	0.83
10656871--10656911	20	2.1	19	95	4	73	26	0	0	73	0.84
10657024--10657053	11	2.6	11	94	5	51	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10657027--10657057	14	2.2	14	94	0	53	25	0	0	74	0.82
10658023--10658052	10	3.0	10	90	0	51	70	6	10	13	1.34
10658023--10658061	20	2.0	20	89	0	60	76	5	7	10	1.13
10664652--10664710	26	2.2	27	81	6	66	71	1	1	25	1.05
10664649--10664719	37	1.9	37	86	11	101	71	1	1	25	1.02
10664649--10664719	18	3.8	19	80	14	78	71	1	1	25	1.02
10685406--10685442	18	2.1	18	100	0	74	48	5	10	35	1.61
10689680--10689829	43	3.5	43	93	0	237	12	22	32	33	1.90
10689659--10689828	86	2.0	84	87	2	241	12	21	32	32	1.91
10692215--10692291	38	2.0	38	100	0	154	40	10	15	33	1.81
10693010--10693230	46	4.8	46	97	0	397	30	28	20	20	1.97
10700168--10700434	46	5.8	46	97	0	480	30	28	19	20	1.97
10700857--10700916	30	2.0	30	90	0	93	30	25	8	36	1.85
10703591--10703664	37	2.0	37	94	0	130	29	24	14	31	1.95
10706057--10706122	31	2.1	31	94	0	114	22	34	27	15	1.94
10711120--10711151	14	2.4	14	90	10	50	21	9	28	40	1.84
10711117--10711354	51	4.7	51	79	1	199	26	16	25	31	1.96
10713273--10713322	21	2.4	21	96	0	91	24	22	46	8	1.78
10717357--10717555	55	3.6	55	77	4	204	29	21	14	34	1.93
10731148--10731270	55	2.2	55	76	0	129	27	21	26	24	1.99
10735366--10735541	50	3.5	49	83	7	203	28	27	18	25	1.98
10735366--10735552	101	1.9	99	87	4	277	27	28	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10739715--10739770	27	2.1	27	100	0	112	30	17	12	39	1.87
10745104--10745254	43	3.5	42	78	6	151	27	13	25	33	1.93
10746987--10747050	31	2.1	31	87	0	92	26	23	14	35	1.93
10747262--10747386	24	5.2	24	88	6	191	28	20	20	31	1.97
10747440--10747482	20	2.2	20	100	0	86	32	18	11	37	1.87
10747519--10747566	25	1.9	25	91	0	78	25	14	25	35	1.94
10750350--10750586	108	2.2	108	95	0	420	19	19	35	25	1.95
10755798--10755859	31	2.0	31	93	0	106	27	17	24	30	1.97
10756857--10756945	27	3.3	26	71	11	74	24	20	16	38	1.93
10770659--10770797	57	2.4	58	78	14	146	29	13	20	35	1.91
10775636--10775674	20	1.9	20	84	5	51	43	7	17	30	1.77
10787986--10788011	13	2.0	13	100	0	52	30	0	7	61	1.24
10790312--10791258	47	20.1	47	98	0	1777	35	12	26	25	1.91
10791275--10791365	46	2.0	46	86	0	128	34	6	31	27	1.83
10793633--10793677	23	1.9	24	86	4	65	20	2	51	26	1.59
10798192--10798376	40	4.7	40	80	9	186	25	27	21	25	1.99
10799919--10799963	11	4.0	11	80	5	54	22	0	2	75	0.91
10800621--10800671	17	3.0	17	76	0	57	15	5	7	70	1.30
10803528--10803557	8	3.8	8	90	0	51	3	23	23	50	1.64
10806476--10806515	20	2.0	20	85	9	55	27	25	20	27	1.99
10809289--10809330	22	1.9	22	90	0	66	19	21	16	42	1.89
10809299--10809386	22	4.0	22	72	11	63	15	19	14	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10812690--10812828	25	5.5	25	73	1	89	20	13	27	38	1.90
10812798--10812853	25	2.2	25	84	6	69	25	14	26	33	1.94
10814925--10814971	24	2.0	24	84	16	62	51	17	0	31	1.46
10815344--10815427	6	13.7	6	69	21	50	1	20	3	75	1.03
10815344--10815430	11	7.3	11	71	17	59	1	19	3	75	1.00
10815341--10815425	20	4.0	21	71	20	70	1	22	3	72	1.06
10815430--10815519	17	5.2	17	73	16	78	50	2	1	46	1.21
10815426--10815543	51	2.3	50	74	7	139	47	2	0	49	1.21
10822750--10822799	26	2.0	25	84	7	66	26	12	24	38	1.90
10822768--10822853	40	2.2	40	93	0	145	23	15	20	40	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310