genome.fa.s13.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  137  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44425857--44426135	140	2.0	140	98	0	540	26	21	16	35	1.94
44426298--44426392	48	2.0	48	97	0	181	30	15	13	40	1.86
44427364--44427586	40	5.6	39	82	5	207	25	27	21	26	1.99
44427362--44427586	80	2.8	79	80	7	231	25	27	21	25	1.99
44427518--44427595	40	1.9	41	82	10	97	26	28	20	24	1.99
44428865--44428940	39	1.9	39	91	2	125	27	31	11	28	1.92
44434560--44434722	44	3.8	42	70	19	122	33	25	16	24	1.96
44435344--44435402	29	2.0	29	100	0	118	44	22	10	23	1.83
44436763--44436797	13	2.7	13	95	0	61	71	5	0	22	1.07
44437617--44437787	43	4.0	42	79	6	166	25	16	25	32	1.96
44442454--44442677	113	2.0	113	99	0	439	29	13	21	35	1.92
44445521--44445564	22	2.0	22	82	8	54	38	13	18	29	1.89
44445651--44445839	95	2.0	95	97	0	360	35	14	15	34	1.88
44445902--44446107	40	5.2	40	92	1	324	29	25	22	22	1.99
44451025--44451229	27	7.6	27	85	3	232	31	27	14	27	1.95
44455692--44455960	46	5.7	47	73	11	169	22	30	18	28	1.98
44456693--44456717	13	1.9	13	100	0	50	64	16	4	16	1.44
44458236--44458269	13	2.6	13	95	0	59	5	26	35	32	1.81
44459696--44459908	106	2.0	106	99	0	417	27	30	8	33	1.87
44464672--44464863	96	2.0	96	98	0	375	30	21	18	29	1.97
44466100--44466134	16	2.2	16	89	0	52	45	14	22	17	1.84
44466368--44466478	29	3.9	29	91	1	143	27	12	30	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44466368--44466522	58	2.7	57	79	9	181	27	14	30	27	1.95
44466367--44466522	29	5.4	29	80	11	137	27	14	31	26	1.95
44478289--44478557	135	2.0	135	99	0	529	26	24	20	27	1.99
44479439--44479550	43	2.6	43	81	6	147	28	22	19	29	1.98
44482644--44482866	40	5.6	40	86	3	236	24	21	27	26	1.99
44482719--44482901	79	2.3	80	82	1	226	25	20	27	25	1.99
44483786--44483897	56	2.0	56	98	0	215	36	16	15	32	1.89
44484744--44484914	93	1.8	93	87	2	254	21	19	29	29	1.98
44484748--44484919	46	3.7	46	74	13	163	21	19	28	30	1.98
44500661--44500689	14	2.0	15	93	6	51	3	0	55	41	1.17
44502203--44502242	18	2.2	18	90	0	62	20	20	17	42	1.89
44505596--44505623	13	2.2	13	100	0	56	35	14	7	42	1.73
44506897--44506928	16	2.0	16	100	0	64	43	12	18	25	1.85
44507195--44507414	46	4.7	48	78	11	208	24	29	17	28	1.97
44507195--44507414	93	2.3	93	79	12	236	24	29	17	28	1.97
44507199--44507438	47	5.1	46	73	15	154	24	28	18	29	1.98
44514859--44514999	57	2.5	57	85	0	183	31	24	16	28	1.96
44517829--44518091	40	6.6	39	86	4	278	25	27	21	25	1.99
44517829--44518091	120	2.2	119	82	4	307	25	27	21	25	1.99
44518023--44518100	40	1.9	41	82	10	97	26	28	20	24	1.99
44521467--44521617	76	2.0	76	94	0	266	29	19	21	29	1.98
44524078--44524186	55	2.0	55	98	0	209	16	20	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44524840--44524919	40	2.0	41	97	2	153	30	11	21	37	1.88
44525529--44525598	34	2.1	34	97	0	131	42	21	8	27	1.81
44526265--44526381	60	2.0	56	83	9	146	12	15	13	58	1.64
44527970--44528145	46	3.8	46	74	12	171	22	19	28	29	1.98
44527966--44528136	93	1.8	93	89	0	270	22	19	29	28	1.98
44529644--44529710	33	2.1	32	91	2	107	13	31	8	44	1.74
44532677--44532737	29	2.1	30	90	3	97	26	1	13	59	1.44
44536439--44536527	46	1.9	46	88	4	135	39	8	8	42	1.68
44539674--44539815	48	3.0	48	85	2	178	39	33	9	16	1.82
44539724--44540071	177	2.0	177	90	0	552	41	33	12	12	1.81
44539887--44539991	48	2.2	47	83	6	122	38	33	13	15	1.86
44540638--44540668	16	1.9	16	93	0	53	41	35	3	19	1.67
44541097--44541161	33	1.9	35	81	12	82	35	1	4	58	1.28
44542400--44542445	21	2.2	21	84	0	56	23	4	8	63	1.42
44546702--44546783	25	3.2	25	67	16	78	45	17	1	36	1.56
44546675--44546782	51	2.1	51	100	0	216	43	15	1	38	1.58
44550016--44550092	22	3.5	22	76	13	68	35	9	18	37	1.82
44550395--44550503	36	3.1	36	72	6	96	23	22	20	33	1.97
44550424--44550510	35	2.4	36	79	5	106	21	24	21	32	1.98
44550358--44550513	72	2.2	73	82	4	192	23	21	19	35	1.96
44552538--44552630	31	3.1	29	82	10	98	37	2	4	55	1.31
44555881--44556007	36	3.5	36	75	8	132	23	24	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44556313--44556607	161	1.8	160	92	2	504	39	9	6	43	1.64
44556313--44556631	160	2.0	160	90	2	498	38	10	6	43	1.66
44556562--44556778	120	1.8	121	87	3	330	32	13	8	44	1.75
44568875--44568985	42	2.7	41	80	9	127	29	17	25	27	1.97
44573539--44573568	16	1.9	16	93	6	53	50	20	0	30	1.49
44575853--44576046	40	4.9	39	84	5	237	21	28	25	24	1.99
44596820--44596972	46	3.4	47	69	16	153	32	17	26	23	1.97
44596819--44597036	87	2.4	87	90	4	328	30	18	27	24	1.98
44597004--44597136	46	3.0	44	80	8	128	28	18	27	24	1.98
44604817--44604864	20	2.4	20	89	0	69	50	8	10	31	1.66
44628980--44629164	47	4.1	44	77	14	146	30	19	27	22	1.98
44629075--44629164	44	2.0	44	87	8	130	30	20	26	23	1.98
44639086--44639154	15	4.6	15	83	0	84	11	17	13	57	1.64
44639077--44639164	30	3.0	30	81	8	99	10	17	15	56	1.66
44647268--44647297	10	3.0	10	95	0	51	46	20	0	33	1.51
44654646--44654671	12	2.2	12	100	0	52	50	7	7	34	1.60
44666256--44666323	29	2.3	29	82	0	82	20	14	27	36	1.92
44666256--44666331	29	2.6	28	77	8	80	21	15	27	35	1.94
44669689--44669812	58	2.2	58	97	1	232	38	27	4	29	1.75
44673430--44673466	19	1.9	19	88	0	56	45	18	10	24	1.81
44686727--44686911	40	4.7	40	82	6	225	25	27	22	24	2.00
44686729--44686911	79	2.3	81	83	7	232	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44697498--44697657	42	3.8	42	86	6	216	31	13	25	29	1.94
44697498--44697663	85	2.0	84	85	5	228	31	13	25	29	1.94
44704033--44704093	30	2.0	30	83	0	77	37	4	26	31	1.77
44704557--44704707	68	2.3	64	80	7	160	29	16	27	26	1.97
44704626--44704808	67	2.8	64	75	8	174	30	16	30	22	1.96
44711501--44711545	17	2.6	17	89	6	65	8	28	37	24	1.86
44714636--44715039	219	1.8	220	87	1	596	27	21	29	21	1.98
44725524--44725690	40	4.2	40	87	5	225	23	21	27	27	1.99
44725527--44725690	79	2.1	79	85	6	217	23	20	27	28	1.99
44725627--44726073	227	2.0	227	99	0	876	29	16	21	32	1.95
44729094--44729276	79	2.3	81	82	7	214	25	27	21	24	1.99
44729092--44729276	40	4.7	40	80	7	216	25	28	21	24	1.99
44731698--44731794	30	3.2	30	75	2	106	28	26	15	28	1.96
44738717--44739118	40	10.2	40	84	10	526	23	20	27	28	1.99
44738717--44739095	79	4.8	79	97	0	697	22	20	27	28	1.99
44750869--44751053	40	4.7	40	78	6	189	28	28	20	23	1.99
44757861--44758124	47	5.6	47	91	3	413	33	7	29	28	1.86
44770543--44770656	48	2.4	48	79	8	124	32	21	19	26	1.97
44777885--44777925	20	2.0	21	95	4	75	19	9	19	51	1.74
44780617--44780685	33	2.1	33	100	0	138	26	14	27	31	1.95
44784641--44784682	22	1.9	22	85	9	59	16	7	28	47	1.73
44787671--44787839	85	2.0	85	98	0	329	27	25	10	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44796259--44796389	54	2.4	54	100	0	262	39	19	21	19	1.92
44800197--44800382	92	2.0	92	98	0	363	29	27	15	27	1.96
44800343--44800444	40	2.5	40	80	9	118	26	27	21	24	1.99
44812164--44812384	46	4.8	46	97	1	399	30	28	20	20	1.97
44814269--44814403	48	2.8	48	89	0	189	23	21	25	28	1.99
44814269--44814543	48	5.8	48	71	10	170	25	20	26	26	1.99
44817272--44817312	22	1.9	22	95	5	75	14	29	46	9	1.77
44818434--44818659	47	4.8	48	75	11	182	23	30	18	28	1.98
44818435--44818654	46	4.7	45	74	14	137	23	30	18	28	1.98
44818435--44818697	140	1.9	141	81	7	329	23	29	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310