genome.fa.s13.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  143  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46601032--46601099	9	7.8	9	71	22	56	38	0	0	61	0.96
46601012--46601115	44	2.3	44	81	4	129	42	0	0	57	0.98
46601032--46601101	8	8.1	8	72	19	52	40	0	0	60	0.97
46602474--46602503	2	15.0	2	92	0	51	50	0	3	46	1.18
46602507--46602575	35	2.0	35	91	2	113	42	8	21	27	1.82
46608662--46608706	19	2.4	19	100	0	90	31	15	24	28	1.96
46611125--46611178	6	8.8	6	83	4	72	75	5	1	16	1.07
46611125--46611178	19	2.9	18	86	5	72	75	5	1	16	1.07
46612777--46612826	15	3.3	15	79	17	50	68	0	6	26	1.13
46614456--46614563	43	2.5	43	89	3	155	25	13	25	35	1.93
46619510--46619562	20	2.7	20	79	5	63	15	37	22	24	1.92
46623135--46623177	14	3.1	14	90	3	61	79	0	4	16	0.90
46629916--46630129	46	4.6	44	76	15	202	28	20	29	21	1.98
46629916--46630176	92	2.8	92	94	2	434	28	20	29	21	1.98
46637480--46637696	46	4.7	46	76	10	176	28	18	29	23	1.98
46637482--46637889	48	8.6	48	72	11	217	28	18	29	24	1.98
46639406--46639511	44	2.4	44	92	1	160	27	9	23	39	1.85
46641901--46642068	46	3.6	45	75	15	155	27	27	22	22	1.99
46642494--46642553	30	2.0	30	86	0	84	31	23	5	40	1.76
46653012--46653346	136	2.5	136	92	1	548	53	15	3	26	1.59
46656912--46656941	15	2.0	15	100	0	60	6	13	13	66	1.43
46657347--46657393	23	2.0	23	84	15	62	29	4	6	59	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46657762--46657787	3	8.7	3	100	0	52	34	0	34	30	1.58
46658294--46658397	52	2.0	52	100	0	208	40	17	13	28	1.87
46660698--46660736	20	2.0	20	89	0	60	46	20	0	33	1.51
46662170--46662342	48	3.6	48	77	3	186	36	26	17	19	1.94
46669794--46669827	12	2.7	13	90	4	52	44	20	5	29	1.75
46671717--46671762	24	2.0	23	82	4	56	36	2	13	47	1.54
46673975--46674146	27	6.3	27	78	2	155	26	24	15	33	1.95
46673975--46674144	54	3.1	54	81	3	187	27	24	15	33	1.95
46675519--46675591	37	2.0	37	84	15	98	41	19	9	30	1.83
46676983--46677075	43	2.2	43	92	0	150	24	21	17	36	1.94
46677297--46677339	17	2.6	17	81	3	52	41	20	4	32	1.73
46678054--46678085	12	2.7	12	100	0	64	18	0	6	75	1.01
46680897--46680962	33	2.0	33	96	0	123	34	9	9	46	1.67
46683971--46684011	16	2.6	16	92	0	64	43	17	14	24	1.86
46685952--46685981	13	2.4	13	94	5	53	46	0	6	46	1.29
46698745--46698769	6	4.2	6	100	0	50	68	0	0	32	0.90
46705719--46705773	23	2.3	24	93	3	94	0	32	0	67	0.91
46706363--46706387	3	8.3	3	100	0	50	36	0	0	64	0.94
46706866--46706927	22	2.5	24	75	21	58	35	3	6	54	1.42
46710209--46710292	34	2.4	34	88	5	125	28	22	17	30	1.97
46712455--46712493	19	2.1	19	85	0	51	71	7	5	15	1.26
46712932--46713046	55	2.1	56	83	8	146	34	21	24	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46712957--46713046	27	3.2	27	85	7	119	32	23	24	20	1.98
46713152--46713216	28	2.3	28	91	0	103	32	7	27	32	1.85
46718636--46718705	32	2.2	32	94	2	122	30	32	12	24	1.93
46719564--46719588	13	1.9	13	100	0	50	64	8	0	28	1.22
46721587--46721692	47	2.3	46	90	1	158	49	14	29	7	1.70
46721601--46721692	46	2.0	47	91	2	150	50	13	30	6	1.66
46725676--46725714	20	2.0	20	89	0	60	51	0	7	41	1.31
46725711--46725755	22	2.0	22	83	8	56	60	2	0	37	1.09
46726000--46726033	17	2.1	17	88	5	52	50	0	0	50	1.00
46729032--46729440	209	2.0	209	100	0	818	27	22	16	33	1.95
46733777--46733827	28	1.9	27	84	11	70	56	0	13	29	1.38
46737359--46737471	43	2.6	45	81	5	126	25	12	25	36	1.91
46740854--46740885	16	2.0	16	93	0	55	40	6	28	25	1.79
46746698--46746909	46	4.6	46	85	1	255	41	11	22	24	1.87
46747009--46747051	13	3.3	13	76	0	50	37	2	23	37	1.68
46748231--46748290	22	2.7	22	89	0	84	16	23	18	41	1.90
46751963--46752034	21	3.2	21	64	21	56	38	8	25	27	1.84
46751962--46753058	46	23.8	46	97	0	2027	39	11	25	23	1.88
46755048--46755133	42	2.0	42	100	0	172	32	22	18	26	1.97
46762634--46762674	16	2.6	17	81	14	52	39	2	0	58	1.11
46766175--46766313	68	2.0	68	94	0	242	48	1	2	46	1.25
46768439--46768508	37	1.9	35	81	18	81	30	12	0	57	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46768616--46768671	25	2.3	24	79	14	62	37	16	3	42	1.65
46777292--46777336	13	3.4	13	87	6	72	13	11	6	68	1.37
46777204--46777600	100	4.1	98	78	12	390	25	15	18	41	1.89
46777506--46778718	77	16.1	76	89	3	1572	29	16	21	32	1.95
46778633--46778971	88	3.8	85	79	6	306	28	15	19	36	1.92
46778656--46778971	175	1.8	174	82	8	417	29	15	20	35	1.93
46779763--46779802	20	2.1	18	86	9	53	35	0	5	60	1.19
46783008--46783058	24	2.1	24	96	0	93	23	9	33	33	1.88
46786882--46787100	92	2.4	92	100	0	438	36	13	9	40	1.78
46788897--46788992	48	2.0	48	91	0	156	33	17	17	31	1.94
46791899--46791989	34	2.6	35	82	1	103	17	16	24	41	1.89
46791941--46792054	36	3.2	36	79	1	140	14	11	33	40	1.82
46794318--46794471	75	2.1	75	88	0	227	29	12	16	41	1.85
46794710--46795184	38	13.0	38	77	9	406	26	21	15	36	1.93
46794802--46795183	75	5.2	74	83	5	445	25	22	15	35	1.94
46795371--46795416	15	3.0	15	77	22	51	54	0	0	45	0.99
46795361--46795410	15	3.2	17	76	21	56	46	0	2	52	1.12
46796880--46796912	12	2.8	12	90	0	57	24	42	0	33	1.55
46804815--46804847	16	2.0	17	88	5	50	57	3	3	36	1.29
46809977--46810023	16	2.9	16	75	9	51	29	0	6	63	1.19
46810012--46810051	20	2.0	20	95	0	71	30	2	15	52	1.55
46810403--46810444	21	2.0	21	95	0	75	42	16	4	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46810507--46810545	16	2.4	16	86	4	51	82	15	0	2	0.79
46813115--46813162	6	7.8	6	92	2	78	54	0	29	16	1.43
46815069--46815122	25	2.2	25	89	0	81	11	31	33	24	1.90
46817060--46817115	14	4.2	14	73	13	55	33	5	14	46	1.67
46817057--46817107	25	2.0	25	96	0	93	31	7	13	47	1.72
46820973--46821228	113	2.3	113	100	0	512	37	5	18	38	1.75
46829470--46829574	42	2.4	42	85	7	131	37	25	15	21	1.93
46829439--46829603	43	3.9	42	79	9	156	34	26	15	23	1.94
46834307--46834337	3	10.3	3	100	0	62	67	0	0	32	0.91
46836204--46836340	60	2.3	60	83	6	161	27	26	18	28	1.98
46838286--46838422	51	2.7	51	79	0	175	40	13	6	39	1.71
46841021--46841157	51	2.7	51	79	0	175	40	13	6	39	1.71
46843394--46843474	36	2.3	33	77	22	85	43	0	3	53	1.18
46849981--46850030	22	2.3	22	80	12	59	34	0	24	42	1.55
46859495--46859601	17	5.9	18	87	6	155	36	14	11	38	1.81
46859495--46859601	35	3.0	35	95	4	187	36	14	11	38	1.81
46863415--46863466	18	2.8	18	85	5	68	42	13	5	38	1.68
46865746--46865866	41	2.9	42	81	7	147	29	27	19	23	1.98
46865709--46865866	84	1.9	84	84	5	212	27	28	19	24	1.99
46865709--46865877	43	4.0	42	76	10	164	28	27	18	24	1.98
46868481--46868522	22	1.9	22	85	9	59	30	38	0	30	1.58
46876740--46876782	19	2.3	18	84	7	59	18	6	11	62	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46876921--46877869	67	14.2	67	97	1	1676	29	17	32	21	1.96
46879742--46879798	25	2.3	25	75	6	62	31	15	14	38	1.87
46880160--46880196	18	2.0	19	89	5	58	45	13	0	40	1.43
46882115--46882158	22	2.0	22	86	8	63	29	38	0	31	1.58
46898061--46898155	48	2.0	48	87	0	136	17	20	23	38	1.93
46898066--46898168	48	2.1	48	85	0	134	17	21	23	37	1.94
46899102--46899127	10	2.6	10	100	0	52	50	11	19	19	1.77
46904927--46905054	47	2.7	48	86	6	170	25	29	19	25	1.98
46906869--46906936	29	2.3	29	85	5	93	27	30	13	27	1.94
46906758--46907085	174	1.9	174	95	0	593	31	24	14	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310