genome.fa.s13.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  140  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45651814--45651850	18	2.0	19	94	5	67	37	16	8	37	1.78
45667595--45667631	15	2.4	16	82	13	51	48	43	8	0	1.32
45667692--45667756	29	2.2	29	94	0	112	18	49	20	12	1.79
45676163--45676197	13	2.8	12	83	8	52	31	11	0	57	1.34
45676500--45676608	44	2.7	38	75	19	94	35	20	4	39	1.73
45676585--45676640	16	3.5	16	72	0	58	30	17	5	46	1.71
45678014--45678077	30	2.1	32	82	5	78	46	4	4	43	1.45
45679268--45679308	20	2.2	19	86	8	57	73	2	17	7	1.17
45680220--45680263	19	2.4	19	85	7	56	50	0	9	40	1.34
45680355--45680383	15	1.9	15	100	0	58	41	0	0	58	0.98
45681319--45681386	15	4.7	15	67	10	52	5	25	0	69	1.11
45681329--45681379	17	3.1	17	75	10	52	3	23	0	72	1.01
45682401--45682537	60	2.3	60	83	8	163	30	19	23	26	1.98
45684811--45684856	9	5.1	9	86	0	65	45	19	10	23	1.82
45684884--45685018	17	7.4	17	63	14	63	48	14	5	32	1.65
45684876--45685001	17	6.8	20	66	13	81	46	15	6	32	1.71
45684876--45685040	74	2.2	74	91	4	253	46	14	6	32	1.69
45684875--45685023	37	4.0	37	95	0	262	45	14	6	33	1.70
45686349--45686381	11	3.1	11	86	4	50	0	27	21	51	1.48
45686350--45686383	10	3.3	10	84	8	50	0	23	20	55	1.43
45695568--45695787	46	4.7	46	84	5	257	27	20	29	22	1.98
45695969--45696082	58	2.0	58	96	0	210	33	10	17	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45697418--45697496	39	2.0	39	97	0	149	24	29	5	41	1.76
45697514--45697543	15	1.9	16	93	6	53	56	10	0	33	1.32
45698917--45699774	137	6.3	137	95	0	1475	26	20	19	32	1.97
45699110--45699772	92	7.3	90	69	16	320	26	20	19	32	1.97
45699432--45699765	41	7.5	41	67	19	159	27	20	20	32	1.97
45699473--45699741	45	5.8	48	73	17	208	27	20	20	32	1.97
45712362--45712566	28	7.4	28	87	3	272	26	12	29	31	1.93
45712387--45712566	55	3.3	55	94	1	299	27	12	28	30	1.93
45712387--45712566	83	2.2	82	92	1	297	27	12	28	30	1.93
45734162--45734236	23	3.3	23	86	3	116	32	26	21	20	1.97
45735185--45735212	11	2.5	11	100	0	56	10	14	0	75	1.06
45748705--45748749	19	2.3	20	84	3	56	60	0	6	33	1.23
45752640--45752687	25	1.9	25	83	8	62	16	20	22	39	1.92
45756824--45756903	38	2.1	38	86	6	110	26	30	18	25	1.98
45758038--45758194	38	4.0	38	76	8	122	31	26	21	21	1.98
45758632--45758774	65	2.2	67	93	3	254	36	18	13	31	1.90
45763863--45763978	43	2.7	43	81	5	144	26	18	25	30	1.98
45774792--45774824	12	2.7	12	95	4	57	27	6	33	33	1.81
45779232--45779279	3	16.0	3	100	0	96	66	0	0	33	0.92
45779576--45779620	3	15.0	3	100	0	90	33	0	0	66	0.92
45781043--45781129	27	3.2	27	85	9	124	34	22	24	18	1.96
45782715--45782902	26	7.2	26	99	0	367	35	26	6	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45783644--45783679	17	2.1	17	100	0	72	13	22	16	47	1.82
45784573--45784672	50	2.0	50	94	0	173	30	32	15	23	1.95
45789932--45789989	26	2.2	26	87	0	89	34	24	6	34	1.82
45795683--45795714	14	2.3	14	100	0	64	40	12	0	46	1.42
45801545--45801570	3	8.7	3	100	0	52	30	0	0	69	0.89
45801835--45801872	18	2.1	18	85	9	51	42	2	5	50	1.39
45801944--45801994	20	2.5	20	78	9	59	56	1	7	33	1.39
45803144--45803270	57	2.2	58	83	4	150	52	3	1	41	1.29
45804772--45804894	62	2.0	62	82	3	149	39	26	7	26	1.82
45811260--45811305	14	3.2	14	81	6	65	58	0	2	39	1.10
45811257--45811302	15	3.1	15	81	6	67	58	0	4	36	1.18
45811439--45811497	18	3.3	18	81	11	59	28	28	15	27	1.96
45811451--45811498	12	4.0	12	80	0	51	31	25	14	29	1.95
45813360--45813428	36	2.0	34	83	16	88	50	4	1	43	1.30
45815816--45815853	19	2.0	19	100	0	76	15	36	5	42	1.70
45816988--45817032	24	1.9	23	82	13	56	40	20	0	40	1.52
45817784--45817815	13	2.4	14	94	5	57	15	9	0	75	1.05
45817952--45818001	5	10.0	5	95	0	91	58	0	2	40	1.10
45819009--45819053	23	2.0	23	100	0	90	35	4	4	55	1.40
45823745--45823898	48	3.2	48	77	0	155	27	24	20	27	1.99
45825072--45825144	36	2.0	36	91	0	119	38	5	26	30	1.79
45833180--45833293	57	2.0	57	94	0	201	38	21	21	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45844584--45844608	5	5.0	5	100	0	50	80	0	0	20	0.72
45846427--45846458	12	2.6	13	90	9	50	18	6	25	50	1.70
45853556--45853587	12	2.6	13	90	9	50	18	6	25	50	1.70
45872483--45872522	21	1.9	21	85	10	55	22	2	25	50	1.62
45875829--45875956	47	2.7	48	80	12	158	24	25	18	31	1.98
45876295--45876351	30	1.9	30	92	0	96	26	22	15	35	1.94
45885747--45885778	5	6.2	5	96	3	55	56	0	0	43	0.99
45893982--45894016	17	2.1	17	100	0	70	28	22	20	28	1.98
45921303--45921327	12	2.1	12	100	0	50	16	24	20	40	1.91
45921305--45921413	45	2.4	45	84	0	137	22	17	19	41	1.90
45921577--45921854	18	15.1	18	71	11	152	35	11	15	38	1.83
45924031--45924065	9	3.8	9	88	7	52	74	0	0	25	0.82
45930524--45930548	13	1.9	13	100	0	50	8	40	36	16	1.77
45931961--45931994	17	2.0	17	94	0	59	32	20	17	29	1.96
45938501--45938669	66	2.6	66	89	1	259	17	24	28	30	1.97
45941433--45941477	21	2.0	21	83	8	54	15	33	22	28	1.95
45942859--45943039	95	1.9	93	86	8	260	27	18	29	24	1.98
45942872--45943089	50	4.5	50	77	12	174	27	18	29	24	1.98
45948925--45948981	15	3.9	15	88	2	89	35	0	12	52	1.39
45949353--45949439	21	4.0	23	80	10	101	14	20	25	39	1.91
45959474--45959501	13	2.2	13	100	0	56	78	7	14	0	0.95
45960479--45960535	15	3.9	15	88	2	89	35	0	12	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45960475--45960533	30	2.0	28	93	6	100	32	0	11	55	1.36
45960919--45960993	21	3.4	23	78	12	86	13	22	26	37	1.91
45961147--45961196	26	2.0	25	84	11	66	50	0	22	28	1.49
45970755--45970806	26	2.0	26	100	0	104	42	15	7	34	1.75
45974322--45974349	13	2.2	13	100	0	56	46	10	0	42	1.38
45974468--45974506	6	6.5	6	100	0	78	15	0	33	51	1.44
45980526--45980571	6	7.7	6	97	0	83	28	54	0	17	1.43
45982577--45982755	95	1.9	95	87	2	261	36	13	18	30	1.91
45989125--45989186	25	2.5	25	78	0	70	25	16	27	30	1.96
45991054--45991081	13	2.2	13	100	0	56	32	0	21	46	1.52
45997539--45997577	19	2.0	20	95	5	71	17	0	5	76	0.96
45997539--45997577	20	2.0	19	90	5	60	17	0	5	76	0.96
45997540--45997604	19	2.9	23	84	13	66	26	0	6	67	1.13
46001681--46001734	27	2.0	27	100	0	108	25	18	22	33	1.97
46002958--46002992	17	2.1	17	88	0	52	34	11	0	54	1.37
46006326--46006447	60	2.0	60	93	0	208	35	1	22	40	1.64
46008779--46008843	28	2.4	27	84	5	78	33	12	18	35	1.88
46010174--46010283	26	4.2	26	90	0	157	36	24	6	32	1.81
46013559--46013729	93	1.8	93	96	0	315	28	29	21	21	1.98
46013551--46013726	46	3.8	46	80	12	225	28	28	21	21	1.98
46015952--46016091	3	46.7	3	71	5	95	28	7	2	62	1.33
46016347--46016373	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46016065--46016373	149	2.1	148	81	7	360	29	3	7	60	1.39
46016600--46016649	21	2.3	21	79	3	55	22	10	10	58	1.60
46016679--46016719	15	2.7	15	88	0	64	31	4	0	63	1.15
46016658--46016715	24	2.4	24	82	0	71	34	6	1	56	1.36
46019255--46019322	21	3.2	20	72	15	57	48	2	1	47	1.26
46022730--46022769	18	2.3	17	86	4	53	50	2	2	45	1.28
46022911--46022964	22	2.5	22	80	14	67	29	0	1	68	1.00
46022911--46022976	21	3.0	22	70	16	57	31	0	1	66	1.01
46022932--46022992	12	5.1	12	73	13	54	31	0	1	67	1.01
46022933--46023023	45	2.0	45	82	8	112	29	2	2	65	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310