genome.fa.s13.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  127  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40711271--40711538	48	5.6	48	75	7	217	22	26	21	30	1.99
40711287--40711543	96	2.7	96	89	4	378	22	26	21	29	1.99
40714021--40714194	46	3.8	45	79	9	199	27	28	21	22	1.99
40714029--40714198	47	3.7	47	77	17	153	27	28	22	22	1.99
40714029--40714198	93	1.8	92	92	1	286	27	28	22	22	1.99
40714021--40714214	46	4.2	46	75	12	166	28	27	21	22	1.99
40715859--40715943	40	2.2	40	84	2	109	30	31	20	17	1.95
40716028--40716125	47	2.1	46	85	7	128	27	29	9	33	1.88
40719442--40719618	40	4.4	40	82	4	216	23	21	27	27	1.99
40727334--40727510	40	4.4	40	76	6	155	24	20	27	27	1.99
40727334--40727510	80	2.2	80	81	6	191	24	20	27	27	1.99
40739461--40739557	40	2.5	40	88	5	135	25	23	27	22	2.00
40751106--40751282	55	3.2	55	89	0	246	31	29	12	26	1.93
40751106--40751257	27	5.6	27	92	3	232	30	28	13	27	1.94
40768089--40768266	40	4.5	40	88	3	245	24	23	27	24	2.00
40781271--40781364	47	2.0	47	95	0	170	40	14	12	31	1.84
40806239--40806297	29	2.0	28	83	6	73	72	0	20	6	1.06
40812970--40812994	13	1.9	13	100	0	50	32	20	16	32	1.94
40813355--40813620	133	2.0	133	97	0	505	36	7	25	30	1.84
40813673--40813851	27	6.6	27	81	7	175	27	15	27	29	1.96
40813675--40813830	82	1.9	81	85	3	215	28	15	27	28	1.96
40813671--40813851	82	2.2	81	80	2	211	28	14	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40821541--40821565	13	1.9	13	100	0	50	40	24	4	32	1.73
40828272--40828374	43	2.4	42	77	9	102	33	25	16	25	1.96
40847609--40847639	16	2.0	15	93	6	53	32	25	0	41	1.56
40847844--40848019	51	3.5	49	78	3	190	30	26	17	26	1.97
40847823--40847974	49	3.0	51	78	3	182	30	25	19	25	1.98
40847835--40848071	50	4.7	51	77	4	212	31	25	16	25	1.97
40851064--40851101	15	2.5	15	86	0	58	57	15	13	13	1.65
40854998--40855140	56	2.6	56	93	0	241	23	20	29	27	1.99
40854995--40855210	56	3.9	54	85	2	171	21	17	31	29	1.96
40858476--40858723	50	5.0	50	79	1	255	30	26	16	26	1.97
40865264--40865348	26	3.4	24	75	10	73	24	20	16	38	1.92
40869899--40870131	39	6.0	39	93	0	385	24	28	25	21	1.99
40873155--40873257	52	2.0	52	92	0	170	34	11	15	37	1.84
40877107--40877158	27	2.0	26	84	3	68	17	26	21	34	1.95
40877088--40877245	71	2.3	67	81	4	190	18	27	22	31	1.98
40880813--40880863	26	2.0	26	84	0	66	21	27	17	33	1.96
40889854--40890123	48	5.6	48	81	0	252	26	17	30	25	1.98
40890893--40890922	15	2.0	15	93	0	51	20	3	20	56	1.56
40893569--40893663	40	2.4	40	87	1	129	21	16	29	32	1.95
40893648--40893743	28	3.4	28	82	5	131	25	11	32	31	1.91
40893648--40893755	56	1.9	56	92	3	182	26	12	31	29	1.92
40893648--40893760	28	4.0	28	78	6	122	27	11	30	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40907034--40907195	45	3.6	45	84	3	195	28	25	21	24	1.99
40910997--40911059	27	2.3	27	75	0	63	36	17	15	30	1.91
40916536--40916689	28	5.5	28	96	0	265	33	27	12	25	1.92
40924493--40924526	16	2.2	16	89	5	52	55	14	0	29	1.40
40935884--40936151	49	5.6	48	74	5	177	31	19	25	23	1.98
40935927--40936151	98	2.3	97	78	8	226	31	18	25	24	1.98
40937919--40938056	67	2.1	67	98	1	269	36	22	7	33	1.82
40939993--40940163	43	4.0	42	73	10	112	30	29	16	23	1.96
40940766--40940825	30	2.0	30	100	0	120	33	16	23	26	1.96
40944530--40944697	40	4.2	40	83	4	106	25	27	23	23	2.00
40944553--40944697	40	3.6	40	85	4	193	23	26	24	25	2.00
40958289--40958391	52	2.0	52	94	0	179	43	13	18	24	1.86
40962021--40962047	12	2.2	12	100	0	54	25	14	37	22	1.93
40963666--40963703	16	2.4	16	90	0	58	50	15	21	13	1.78
40971260--40971306	19	2.6	18	78	18	60	19	6	17	57	1.60
40971469--40971654	67	2.9	64	76	8	189	29	18	30	22	1.97
40973031--40973099	28	2.4	29	85	2	95	26	11	33	28	1.91
40974640--40974666	12	2.2	12	100	0	54	25	14	37	22	1.93
40977223--40977358	71	1.9	71	95	0	245	27	21	28	22	1.99
40977232--40977352	33	3.5	33	67	15	91	28	22	28	21	1.99
40977502--40977580	24	3.5	22	74	15	63	3	21	2	72	1.13
40984451--40984871	48	8.9	48	76	8	344	25	28	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40984613--40984859	89	2.7	89	81	8	275	25	28	17	28	1.97
40984704--40984877	89	2.0	88	87	2	251	26	30	17	25	1.97
40986595--40986697	51	2.0	51	98	0	197	42	21	8	27	1.82
40988391--40988428	18	2.1	19	90	5	60	34	15	0	50	1.45
40988593--40988757	84	1.9	84	81	7	199	30	27	18	23	1.97
40991826--40991923	27	3.5	28	90	2	135	25	14	28	31	1.95
40991854--40991936	27	3.0	27	87	5	96	30	12	25	32	1.92
40991826--40991937	28	4.0	27	83	6	98	27	13	25	33	1.93
41007788--41007837	25	2.0	25	88	0	73	8	22	46	24	1.78
41008858--41008896	20	2.0	20	89	0	60	15	0	10	74	1.07
41012943--41013009	34	2.0	34	96	0	125	26	23	20	28	1.99
41022692--41022752	27	2.3	27	88	0	86	1	19	4	73	1.10
41025173--41025249	39	2.0	39	94	0	136	42	14	11	31	1.81
41028672--41028720	24	2.0	24	100	0	98	32	8	32	26	1.86
41028698--41028971	47	5.8	47	95	0	476	31	8	31	28	1.87
41029090--41029168	37	2.1	37	95	0	140	24	18	32	24	1.97
41033665--41033701	19	1.9	19	88	0	56	64	5	8	21	1.40
41035957--41035986	12	2.5	12	100	0	60	26	20	46	6	1.75
41039465--41039605	48	3.0	48	84	1	185	26	22	25	24	2.00
41041142--41041320	27	6.6	27	84	3	207	30	27	15	26	1.96
41041163--41041318	82	1.9	81	88	3	233	29	28	15	26	1.96
41041872--41041896	13	1.9	13	100	0	50	32	16	20	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41043007--41043361	117	3.0	117	95	0	638	35	22	12	29	1.91
41043361--41043398	17	2.2	18	85	4	51	55	10	5	28	1.56
41047931--41048028	27	3.5	28	90	2	135	26	13	28	31	1.94
41047959--41048041	27	3.0	27	87	5	96	30	12	25	32	1.92
41047931--41048042	28	4.0	27	83	6	98	28	12	25	33	1.92
41051313--41051341	14	2.1	14	100	0	58	58	0	27	13	1.36
41053821--41053899	24	3.3	24	77	8	72	7	34	35	22	1.83
41054174--41055137	43	22.8	43	86	5	1162	17	34	31	16	1.93
41054174--41055137	212	4.6	212	88	3	1388	17	34	31	16	1.93
41054175--41055137	84	11.4	85	86	4	1200	17	34	31	16	1.93
41056496--41056562	33	2.0	33	97	0	125	25	31	14	28	1.95
41068712--41068832	58	2.1	59	87	4	174	33	24	17	23	1.96
41073672--41073698	13	2.1	13	100	0	54	0	7	14	77	0.97
41078884--41079892	128	7.9	126	84	6	967	15	33	32	18	1.93
41078884--41079892	43	23.7	43	83	5	1050	15	33	32	18	1.93
41083665--41083742	24	3.2	24	79	0	93	7	35	35	20	1.81
41083988--41084267	43	6.5	42	88	3	233	17	32	31	18	1.94
41083988--41084255	86	3.1	84	78	9	258	18	32	30	18	1.95
41084017--41084271	43	6.0	43	92	0	361	17	33	31	16	1.93
41084661--41084769	57	1.9	57	83	7	141	11	41	27	19	1.86
41084852--41084972	58	2.1	59	90	1	190	33	24	18	23	1.96
41088794--41088848	28	2.0	28	92	0	92	1	29	5	63	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41088822--41088895	39	1.9	39	83	2	96	6	25	8	59	1.51
41091933--41091967	15	2.2	16	90	5	54	48	0	0	51	1.00
41092070--41092104	18	2.0	17	88	5	52	45	0	0	54	0.99
41092344--41092455	16	7.0	16	93	0	188	35	35	0	28	1.58
41094336--41094371	18	2.0	18	94	0	63	41	11	30	16	1.83
41096227--41096304	24	3.2	24	71	7	68	11	35	33	19	1.88
41096590--41097639	43	24.4	43	96	0	1800	17	32	31	18	1.94
41096540--41097756	43	28.3	42	93	1	851	17	31	31	18	1.95
41097615--41097792	43	4.2	42	78	8	146	14	26	38	20	1.91
41105768--41105806	20	2.0	20	90	5	62	17	25	33	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310