genome.fa.s13.2.7.7.80.10.50.1000.286.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  286  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94160176--94160261	43	2.0	43	100	0	172	20	32	23	23	1.98
94169088--94169281	40	4.8	40	91	0	307	24	20	30	24	1.99
94170927--94170960	15	2.3	15	89	0	50	32	0	8	58	1.29
94176645--94176674	11	2.7	11	89	0	51	50	0	26	23	1.50
94180990--94181112	29	4.2	29	83	9	99	32	2	1	63	1.17
94181017--94181162	3	49.3	3	81	2	170	30	3	2	63	1.22
94182550--94182600	23	2.2	23	100	0	102	39	0	13	47	1.43
94183854--94183898	21	2.1	21	84	8	56	2	46	20	31	1.62
94184308--94184336	13	2.1	14	93	6	51	55	10	0	34	1.34
94189693--94189955	40	6.6	39	86	4	278	25	27	21	25	1.99
94189693--94189955	120	2.2	119	82	4	307	25	27	21	25	1.99
94189887--94189964	40	1.9	41	82	10	97	26	28	20	24	1.99
94197677--94197979	80	3.8	80	88	2	387	26	28	20	24	1.99
94197707--94197979	120	2.3	120	85	4	363	27	28	20	23	1.99
94197677--94197926	40	6.3	40	94	0	376	26	28	20	23	1.99
94197911--94197988	40	1.9	41	82	10	97	26	28	21	23	1.99
94201335--94201405	34	2.1	34	84	5	90	35	0	16	47	1.47
94201327--94201398	9	8.2	9	75	9	60	36	0	18	45	1.49
94201364--94201398	18	1.9	18	100	0	70	37	0	17	45	1.48
94201526--94201638	16	7.1	16	77	11	106	36	3	15	44	1.64
94201527--94201651	9	14.2	9	73	17	84	35	3	16	44	1.64
94201488--94201638	80	1.9	80	91	0	248	37	3	14	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94201756--94202093	98	3.5	98	96	1	583	50	3	5	39	1.44
94206091--94206130	21	1.9	21	85	10	55	60	22	0	17	1.37
94206587--94206621	17	2.0	17	88	5	52	65	14	0	20	1.26
94206868--94206892	12	2.1	12	100	0	50	52	32	8	8	1.60
94210070--94210222	40	3.8	40	83	8	209	24	20	28	25	1.99
94210070--94210254	40	4.6	40	76	8	178	25	23	27	24	2.00
94212643--94212760	27	4.3	26	76	8	101	30	40	16	11	1.85
94212637--94212758	55	2.2	55	80	9	142	29	40	17	13	1.87
94226469--94230114	743	4.9	748	75	10	1819	29	23	15	30	1.96
94235614--94235784	47	3.7	47	72	13	181	29	31	18	21	1.96
94235604--94235777	93	1.9	93	92	0	294	29	31	17	21	1.96
94238206--94238274	15	4.7	15	78	8	79	60	15	14	8	1.57
94239685--94239722	19	2.0	19	100	0	76	36	10	5	47	1.61
94241320--94241581	47	5.6	47	69	13	209	29	27	20	22	1.98
94241285--94241633	93	3.8	93	91	1	558	28	28	19	22	1.98
94241460--94241627	46	3.6	46	70	13	155	29	29	20	21	1.98
94243810--94243878	15	4.7	15	78	8	79	60	15	14	8	1.57
94246860--94247033	47	3.7	47	75	13	205	28	31	19	20	1.97
94246853--94247026	93	1.9	93	96	0	321	29	31	18	20	1.96
94254132--94254166	15	2.3	15	90	9	54	17	8	0	74	1.06
94262461--94262577	19	6.2	19	67	25	70	30	3	2	63	1.24
94262447--94262504	31	1.9	30	85	3	80	27	3	0	68	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94274459--94274555	44	2.3	41	84	10	117	31	16	26	24	1.96
94275224--94275250	13	2.1	13	100	0	54	14	33	29	22	1.94
94276203--94276384	3	59.3	3	68	21	85	31	3	1	63	1.20
94276270--94276314	16	2.8	16	83	13	56	40	0	0	60	0.97
94276262--94276321	23	2.6	23	78	5	68	36	0	0	63	0.95
94276523--94276631	20	5.7	19	68	25	61	30	4	2	62	1.29
94276509--94276566	31	1.9	30	85	3	80	27	3	0	68	1.05
94276572--94276635	12	5.1	12	77	20	60	32	7	1	57	1.37
94276548--94276641	39	2.5	37	81	13	111	31	5	3	59	1.35
94278190--94278330	41	3.4	42	90	4	200	36	26	18	18	1.94
94284835--94284922	43	2.1	41	85	6	115	36	23	18	21	1.95
94285289--94285372	42	2.0	42	100	0	168	38	23	4	33	1.76
94289335--94289485	17	9.3	16	71	11	103	31	5	1	62	1.26
94289338--94289389	20	2.6	19	77	20	52	28	1	1	67	1.12
94289338--94289478	7	19.7	7	64	22	53	29	5	0	63	1.22
94289357--94289434	24	3.3	24	76	18	83	29	5	0	65	1.14
94301594--94302384	44	18.1	44	83	3	927	31	17	25	26	1.97
94308550--94308621	36	2.0	36	100	0	144	16	13	19	50	1.79
94312799--94312867	15	4.6	15	83	0	84	11	17	13	57	1.64
94312790--94312877	30	3.0	30	81	8	99	10	17	15	56	1.66
94315264--94315439	46	3.8	45	81	10	212	21	21	29	28	1.98
94315260--94315431	93	1.8	93	94	0	308	20	21	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94322222--94322259	19	2.0	19	89	0	58	57	0	0	42	0.98
94323459--94323519	30	2.0	30	100	0	122	42	3	29	24	1.70
94323937--94323976	19	2.1	19	85	0	53	45	0	5	50	1.23
94324008--94324038	16	2.0	16	93	6	55	38	0	0	61	0.96
94324059--94324103	13	3.1	16	78	21	62	51	0	0	48	1.00
94324059--94324118	28	2.1	29	84	9	79	51	0	0	48	1.00
94326458--94326517	28	2.1	28	81	6	68	28	26	15	30	1.96
94326472--94326625	28	5.5	28	74	1	121	27	22	13	37	1.92
94326472--94326625	56	2.8	56	75	7	159	27	22	13	37	1.92
94335120--94335160	21	2.0	22	86	13	61	14	26	46	12	1.80
94336296--94336558	48	5.5	47	74	14	172	24	29	18	26	1.98
94343970--94344102	48	2.7	49	89	2	196	26	32	15	25	1.96
94358053--94358275	79	2.8	78	83	7	272	24	27	22	25	2.00
94358053--94358275	39	5.7	40	87	6	280	24	27	22	25	2.00
94362617--94362732	43	2.7	42	81	7	153	31	17	23	28	1.97
94364066--94364091	8	3.2	8	100	0	52	42	11	23	23	1.86
94367556--94367678	38	3.2	38	82	7	151	25	23	17	34	1.96
94374897--94374999	38	2.7	39	85	7	97	20	25	22	32	1.98
94374915--94374999	38	2.2	38	89	6	127	21	23	21	34	1.97
94377513--94377622	38	2.9	38	90	6	163	24	22	18	34	1.96
94381598--94381775	27	6.6	27	83	3	205	26	15	28	29	1.96
94381599--94381754	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94381595--94381775	82	2.2	81	83	2	229	27	15	27	29	1.96
94393255--94393333	37	2.1	37	90	0	122	25	31	18	24	1.98
94393797--94393854	24	2.5	23	81	16	66	32	5	0	62	1.18
94411208--94411317	29	3.9	29	83	7	127	28	27	16	28	1.97
94417521--94417752	56	4.1	56	97	0	437	45	9	22	22	1.81
94424362--94424481	56	2.1	56	98	0	231	45	9	23	22	1.81
94429244--94429279	18	2.0	18	100	0	72	11	16	22	50	1.77
94436395--94436439	22	2.0	22	91	0	72	33	2	15	48	1.57
94440173--94440217	22	2.0	22	91	0	72	33	2	15	48	1.57
94448051--94448228	27	6.6	27	83	3	205	26	15	28	29	1.96
94448052--94448207	82	1.9	81	88	3	233	26	15	28	29	1.96
94448048--94448228	82	2.2	81	83	2	229	27	15	27	29	1.96
94449425--94449578	48	3.3	47	76	10	170	29	18	29	22	1.97
94449378--94449578	46	4.3	47	72	6	167	30	17	28	22	1.97
94452179--94452217	19	2.1	19	90	0	60	7	23	23	46	1.78
94456023--94456251	114	2.0	114	99	0	449	37	17	8	36	1.80
94457425--94457613	55	3.5	53	85	5	245	21	24	19	34	1.96
94457600--94457721	47	2.6	47	97	0	226	26	24	13	36	1.92
94457862--94457945	44	1.9	44	85	4	116	25	22	13	39	1.90
94462630--94462707	40	1.9	41	84	2	104	26	28	19	25	1.99
94462618--94462894	43	6.6	40	88	2	187	23	30	20	25	1.98
94462699--94462907	43	4.9	43	96	0	366	22	32	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94464209--94464277	35	2.0	35	97	0	129	28	36	7	27	1.84
94464849--94464878	15	2.1	15	93	6	53	36	26	6	30	1.82
94480425--94480648	40	5.6	40	84	7	276	26	26	23	24	2.00
94480425--94480648	83	2.8	80	85	5	283	26	26	23	24	2.00
94490231--94490267	18	2.1	19	90	10	60	35	27	8	29	1.85
94496380--94496694	27	11.7	27	84	1	328	40	21	8	30	1.83
94496374--94496641	54	5.0	54	89	0	392	39	20	8	31	1.83
94496374--94496615	81	3.0	81	87	0	367	39	20	8	31	1.82
94496380--94496694	81	3.9	81	84	0	362	40	21	8	30	1.83
94496375--94496751	54	7.0	53	81	5	323	38	20	8	31	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310