genome.fa.s13.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  100  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32248822--32248853	8	4.0	8	95	0	55	71	15	0	12	1.14
32250273--32250344	32	2.3	31	79	15	78	61	1	0	37	1.05
32250274--32250344	24	3.0	23	83	8	72	60	1	0	38	1.06
32250282--32250348	12	5.6	12	72	22	52	61	1	0	37	1.05
32250922--32250960	20	2.0	20	94	0	69	17	10	20	51	1.74
32252615--32252714	44	2.3	44	85	0	146	33	13	17	37	1.88
32254257--32254289	11	2.8	12	86	4	50	51	12	3	33	1.54
32256066--32256126	14	4.4	14	70	0	50	59	6	16	18	1.58
32256053--32256111	28	2.1	28	90	0	91	55	5	16	22	1.60
32256068--32256122	28	2.0	28	85	7	76	60	7	14	18	1.57
32257991--32258045	21	2.4	24	82	11	71	70	7	9	12	1.32
32259109--32259313	106	1.9	105	85	1	275	32	15	14	38	1.87
32259758--32259812	22	2.4	24	73	14	62	56	1	1	40	1.21
32259842--32259876	15	2.2	16	90	5	54	54	8	2	34	1.46
32260137--32260183	20	2.4	20	89	3	69	51	4	0	44	1.21
32260137--32260192	20	2.8	20	83	5	60	55	3	0	41	1.17
32264537--32264615	37	2.1	37	90	0	122	25	31	18	24	1.98
32264734--32267905	47	67.4	47	99	0	6227	29	29	8	32	1.87
32271479--32271657	40	4.5	40	77	6	127	25	26	22	25	2.00
32271462--32271657	80	2.4	81	81	5	202	25	27	21	25	2.00
32271963--32272038	29	2.6	29	85	6	100	27	31	15	25	1.96
32273936--32274014	37	2.1	37	88	4	115	25	30	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32274130--32274509	47	8.1	47	93	0	634	28	30	8	32	1.88
32278661--32278718	27	2.1	28	81	9	66	62	0	5	32	1.18
32279019--32279211	7	27.6	7	70	20	111	59	0	2	37	1.16
32279019--32279197	18	9.7	18	70	21	108	58	0	2	37	1.17
32279003--32279128	44	2.7	45	77	17	127	57	0	3	38	1.20
32279065--32279204	3	43.7	3	70	24	83	61	0	1	36	1.10
32279016--32279217	30	6.7	30	71	19	138	59	0	2	37	1.18
32281137--32281776	210	3.1	210	89	3	922	28	22	18	30	1.98
32292744--32292792	15	3.3	14	78	21	55	67	2	2	28	1.13
32293082--32293256	7	25.6	7	70	22	97	60	0	2	37	1.14
32293082--32293261	15	10.9	17	71	22	104	60	1	2	36	1.17
32293082--32293264	48	3.7	48	73	16	126	60	1	2	36	1.16
32293079--32293255	33	5.4	34	75	16	133	59	0	2	37	1.14
32293126--32293241	20	5.9	20	75	16	75	61	0	1	36	1.12
32293107--32293268	55	2.9	54	78	14	127	62	1	1	34	1.14
32296982--32297153	60	2.8	61	78	11	151	25	25	19	29	1.99
32298813--32298865	26	2.0	26	92	0	88	24	20	24	30	1.99
32301728--32301876	60	2.5	63	83	9	186	26	24	19	29	1.98
32301682--32301824	32	4.5	33	67	23	85	30	25	18	26	1.98
32304664--32304696	17	1.9	17	93	0	57	30	30	0	39	1.57
32307530--32307613	25	3.0	27	81	14	100	34	4	1	59	1.26
32307538--32307606	13	5.2	12	72	24	50	33	5	1	59	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32307549--32307675	22	5.3	22	70	16	76	33	5	1	59	1.30
32307708--32307757	20	2.5	19	81	15	57	48	4	4	44	1.40
32308915--32308940	2	13.0	2	100	0	52	50	0	0	50	1.00
32310712--32311087	177	2.1	176	89	2	558	28	26	17	28	1.97
32311001--32311165	85	1.9	85	88	0	249	30	21	21	26	1.98
32311181--32311264	42	2.1	39	82	8	98	28	25	14	32	1.94
32311086--32311844	177	4.3	177	87	3	1022	28	25	17	28	1.98
32311379--32311611	44	5.3	44	65	14	122	26	28	16	28	1.97
32311086--32311840	353	2.2	345	85	3	1005	28	25	17	28	1.98
32311833--32311977	45	3.2	45	74	1	139	28	21	20	29	1.98
32313269--32313344	25	2.8	26	78	11	91	13	5	6	75	1.18
32313866--32313904	21	1.9	20	84	5	51	5	10	7	76	1.13
32321495--32321763	46	5.8	46	75	14	257	21	20	29	29	1.98
32321541--32321709	47	3.6	47	78	13	204	21	19	28	29	1.98
32321491--32321756	93	2.9	93	94	0	451	21	20	29	28	1.98
32323394--32323479	32	2.7	32	80	1	102	53	15	2	29	1.54
32323615--32323701	43	2.0	43	100	0	174	16	29	6	47	1.72
32324744--32324797	11	5.0	11	78	13	58	18	46	5	29	1.72
32325335--32325405	18	3.9	18	83	0	79	35	23	8	32	1.85
32329443--32329496	11	5.0	11	86	4	74	18	46	5	29	1.72
32329863--32329962	50	2.0	50	100	0	200	22	24	22	32	1.98
32335469--32335552	26	3.2	26	96	0	150	34	5	23	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32344016--32344102	43	2.0	43	84	8	115	24	19	28	27	1.98
32346146--32346186	19	2.2	19	95	0	73	4	17	0	78	0.93
32356468--32356531	3	21.3	3	88	6	94	29	1	3	65	1.17
32358195--32358263	6	12.2	5	82	14	57	18	4	1	75	1.05
32358195--32358262	18	3.9	17	78	18	70	19	4	1	75	1.06
32358198--32358263	29	2.3	29	84	5	80	19	4	1	74	1.07
32358198--32358263	23	2.9	22	80	8	69	19	4	1	74	1.07
32362841--32362894	17	3.6	17	68	31	59	57	22	0	20	1.41
32362843--32362895	27	2.0	27	100	0	106	56	20	0	22	1.42
32375261--32375296	12	3.0	12	95	0	63	27	25	5	41	1.77
32375588--32375623	12	3.0	12	95	0	63	27	25	5	41	1.77
32375014--32375667	327	2.0	327	100	0	1308	29	16	18	36	1.92
32380336--32380368	14	2.3	15	94	5	59	33	21	33	12	1.90
32383915--32384088	71	2.5	69	84	3	215	27	14	23	34	1.94
32384088--32384253	72	2.3	71	85	6	219	22	13	21	42	1.88
32384231--32384264	13	2.5	13	90	4	50	20	11	8	58	1.59
32384186--32385233	140	7.5	140	97	0	1936	24	16	20	38	1.92
32384371--32384404	13	2.5	13	90	4	50	20	11	8	58	1.59
32384511--32384544	13	2.5	13	90	4	50	20	11	8	58	1.59
32384651--32384684	13	2.5	13	90	4	50	20	11	8	58	1.59
32384791--32384824	13	2.5	13	90	4	50	20	11	8	58	1.59
32384931--32384964	13	2.5	13	90	4	50	20	11	8	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32385071--32385104	13	2.5	13	90	4	50	20	11	8	58	1.59
32385259--32385354	49	2.0	49	95	0	174	29	16	21	32	1.96
32385182--32385428	123	2.0	125	88	7	367	30	16	20	32	1.95
32385308--32386215	74	12.2	74	96	1	1574	33	16	20	30	1.94
32386916--32388753	883	2.1	882	98	0	3588	36	20	15	27	1.93
32391114--32391145	16	2.1	16	88	11	50	21	0	18	59	1.38
32393806--32393850	17	2.6	17	82	0	54	57	0	0	42	0.98
32394238--32394277	21	1.9	21	84	0	53	5	5	7	82	0.94
32395021--32395051	15	2.1	15	100	0	62	54	12	12	19	1.70
32396768--32397203	27	16.1	27	82	6	490	27	21	9	41	1.84
32396768--32397203	108	4.0	108	88	1	552	27	21	9	41	1.84
32397208--32397374	27	6.2	27	80	4	167	36	17	18	26	1.94
32397208--32397359	80	1.9	81	86	4	218	36	19	17	26	1.93
32397574--32397656	27	3.1	26	87	5	112	19	21	21	37	1.94
32397744--32397802	22	2.7	22	81	0	64	20	25	22	32	1.98
32397967--32398040	27	2.8	27	85	6	89	17	24	21	36	1.95
32398183--32398359	18	9.8	18	69	15	78	20	15	13	50	1.78
32398183--32398338	6	25.8	6	72	15	108	20	15	13	50	1.77
32398193--32398338	79	1.8	79	91	0	238	20	15	13	50	1.78
32400082--32400130	21	2.3	20	80	16	55	67	4	2	26	1.19
32401957--32402638	119	5.7	119	91	1	1116	31	19	14	34	1.92
32401955--32402642	238	2.9	238	97	0	1277	31	19	14	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32416361--32416394	13	2.8	12	86	8	50	61	0	2	35	1.11
32418193--32418310	34	3.4	34	77	9	105	30	22	20	27	1.98
32418261--32418336	36	2.1	36	90	4	118	30	15	19	34	1.93
32418529--32418573	14	3.3	14	84	3	56	22	17	44	15	1.86
32421135--32421239	40	2.6	41	80	8	126	23	23	27	24	2.00
32423614--32423638	10	2.5	10	100	0	50	72	0	0	28	0.86
32428496--32428553	19	3.0	18	80	12	62	75	10	1	12	1.11
32428496--32428549	13	4.2	12	76	9	54	75	9	1	12	1.11
32430020--32430055	16	2.3	15	90	4	54	75	0	11	13	1.06
32430265--32430302	18	2.1	18	85	9	51	71	5	0	23	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310