genome.fa.s13.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  112  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35820708--35820768	12	5.1	12	84	7	79	21	8	13	57	1.62
35820788--35820870	42	2.0	42	86	9	116	28	8	14	48	1.73
35820830--35820869	12	3.3	12	89	6	55	30	5	15	50	1.65
35821036--35821203	34	5.2	34	62	30	98	22	19	14	43	1.87
35821009--35821204	64	3.1	64	96	0	356	22	18	15	43	1.88
35821061--35821159	30	3.2	30	62	29	71	19	19	16	45	1.86
35821147--35821301	48	3.2	48	91	0	247	24	13	16	45	1.84
35821305--35821407	46	2.2	46	96	0	188	31	12	10	45	1.76
35821214--35821416	108	1.9	110	86	4	295	27	12	13	46	1.79
35821701--35821734	15	2.2	16	94	5	61	17	5	41	35	1.74
35834369--35834631	40	6.6	39	86	4	278	25	27	21	25	1.99
35834369--35834631	120	2.2	119	82	4	307	25	27	21	25	1.99
35834563--35834640	40	1.9	41	82	10	97	26	28	20	24	1.99
35836733--35836783	3	17.3	3	76	11	52	0	35	1	62	1.06
35836733--35836777	12	3.3	14	78	15	58	0	37	2	60	1.09
35837367--35837392	6	4.3	6	100	0	52	30	0	0	69	0.89
35858623--35858730	26	4.2	26	90	4	173	36	23	7	33	1.83
35859662--35859742	35	2.2	37	80	6	94	50	8	4	35	1.55
35859857--35859895	20	1.9	21	89	5	62	43	0	0	56	0.99
35860382--35860434	22	2.3	23	80	3	63	58	1	11	28	1.43
35871830--35871923	49	1.9	48	82	6	118	21	7	15	55	1.65
35876859--35876923	3	21.7	3	100	0	130	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35878674--35878801	39	3.3	39	85	0	175	22	37	18	21	1.94
35880474--35880568	48	2.0	48	85	0	127	21	18	28	31	1.97
35883284--35883334	21	2.5	21	87	6	70	47	1	15	35	1.57
35892926--35892961	19	1.9	19	88	5	56	66	0	11	22	1.22
35896545--35896652	46	2.4	44	86	7	146	21	27	20	30	1.98
35903992--35904035	19	2.2	20	84	11	56	63	4	2	29	1.26
35906297--35906439	42	3.4	42	78	8	121	30	13	22	33	1.92
35910714--35910862	42	3.5	41	83	12	187	30	13	24	31	1.93
35912373--35912405	13	2.6	13	90	4	50	51	15	3	30	1.58
35915283--35915367	43	2.0	44	83	6	111	30	28	17	23	1.97
35917141--35917174	11	2.8	12	86	13	52	55	0	26	17	1.42
35919688--35919825	69	2.0	69	94	2	242	32	21	9	36	1.85
35923697--35923725	11	2.5	12	88	11	51	58	0	24	17	1.38
35935699--35935769	35	2.0	35	94	0	124	39	0	14	46	1.44
35936758--35937003	124	2.0	124	99	0	483	26	4	25	42	1.75
35941369--35941411	17	2.6	17	85	7	63	34	0	4	60	1.17
35942703--35943146	178	2.5	176	80	6	438	31	14	9	45	1.76
35942810--35943146	178	1.9	174	85	4	462	31	14	10	44	1.78
35945733--35945778	17	2.8	17	86	3	67	28	2	13	56	1.48
35946791--35947120	177	1.9	176	84	0	444	30	15	9	43	1.79
35949042--35949127	42	2.0	43	97	2	165	40	12	4	41	1.64
35950734--35950784	20	2.6	20	78	12	52	58	3	0	37	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35950754--35950799	17	2.8	17	87	9	60	63	0	0	36	0.95
35950754--35950819	26	2.6	26	83	11	75	65	0	1	33	1.02
35950856--35950889	16	2.1	16	88	0	50	2	14	0	82	0.79
35958541--35958649	48	2.3	48	80	3	121	30	25	18	25	1.98
35972624--35972708	43	2.0	43	84	9	111	17	5	15	61	1.53
35977567--35977705	22	6.1	21	75	11	89	35	18	22	23	1.96
35977614--35977703	24	3.9	23	81	5	94	37	20	20	22	1.94
35978315--35978360	21	2.2	21	84	7	58	43	15	2	39	1.59
35978327--35978366	21	1.9	21	89	0	62	42	17	0	40	1.49
35986124--35986157	16	2.1	16	88	0	50	35	20	2	41	1.68
35988891--35988916	13	2.0	13	100	0	52	53	0	0	46	1.00
35990812--35990888	40	1.9	40	86	0	109	16	12	31	38	1.87
35995961--35995985	13	1.9	13	100	0	50	84	0	0	16	0.63
35996496--35996521	13	2.0	13	100	0	52	23	7	30	38	1.83
36002491--36002560	27	2.6	26	95	2	95	31	28	12	27	1.93
36002491--36002588	28	3.5	28	90	2	135	31	28	13	26	1.94
36003039--36003068	2	15.0	2	92	0	51	46	0	3	50	1.18
36008023--36008147	40	3.2	40	68	19	111	28	20	20	30	1.98
36007906--36008233	75	4.4	75	81	4	342	25	20	22	31	1.98
36010313--36010584	47	5.8	45	76	11	219	22	28	20	29	1.98
36010312--36010585	94	2.9	92	76	11	299	22	28	20	29	1.98
36012855--36012908	27	2.0	27	100	0	108	51	7	18	22	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36020123--36020328	48	4.2	48	88	6	295	35	5	26	32	1.80
36020470--36020541	37	1.9	37	91	0	117	23	20	33	22	1.97
36030236--36030284	24	2.0	24	84	0	62	51	18	18	12	1.76
36032219--36032267	25	2.0	25	100	0	98	36	18	16	28	1.92
36034144--36034226	27	3.1	26	66	22	64	24	18	7	50	1.71
36034147--36034250	53	2.0	53	92	0	172	24	15	8	51	1.71
36035812--36036075	40	6.7	40	89	5	360	25	27	21	25	1.99
36049391--36049529	46	3.0	46	87	3	190	35	17	22	24	1.95
36049895--36050293	143	2.8	139	80	6	412	31	20	21	26	1.98
36050298--36050629	179	1.9	179	83	2	434	30	22	18	28	1.97
36050937--36050978	16	2.5	17	76	7	50	42	35	2	19	1.64
36053596--36053635	21	1.9	21	94	0	71	25	5	17	52	1.64
36058642--36058678	9	4.1	9	89	0	56	45	10	10	32	1.74
36059545--36059594	7	7.0	7	86	11	66	70	2	2	26	1.09
36060076--36060232	5	26.5	6	69	27	81	65	1	1	31	1.11
36060076--36060232	9	17.7	9	69	27	81	65	1	1	31	1.11
36060071--36060243	27	6.3	28	72	23	106	63	1	2	32	1.17
36060087--36060238	60	2.5	60	78	15	145	65	1	1	32	1.09
36060066--36060238	28	5.9	29	74	23	116	64	1	1	31	1.13
36060159--36060232	23	3.3	23	77	21	86	68	1	0	29	0.97
36060088--36060238	37	4.3	35	76	14	125	65	1	1	31	1.09
36060089--36060224	12	12.7	11	72	19	92	65	1	1	31	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36060275--36060332	29	2.0	30	86	3	82	60	0	0	39	0.97
36063765--36063854	37	2.4	37	90	0	135	22	11	31	35	1.89
36071324--36071364	19	2.2	20	86	8	59	68	7	2	21	1.26
36075575--36076168	210	2.8	210	84	4	724	28	22	18	30	1.97
36086802--36086903	53	1.9	53	95	0	186	24	13	29	32	1.94
36089250--36089422	46	3.7	46	79	10	208	21	20	27	29	1.98
36089247--36089417	93	1.8	93	93	0	297	21	21	28	28	1.98
36089646--36089683	19	2.0	20	85	15	53	36	0	23	39	1.55
36093955--36094004	15	3.5	15	80	20	54	44	8	22	26	1.80
36097971--36098022	16	3.4	16	77	12	56	59	0	5	34	1.21
36097947--36098044	43	2.4	41	80	10	110	59	0	5	35	1.20
36100324--36100375	22	2.4	22	80	6	61	46	13	21	19	1.84
36106919--36107006	40	2.3	38	84	7	122	15	10	34	39	1.82
36108012--36108048	18	2.1	19	85	10	51	16	43	29	10	1.82
36115148--36115181	6	5.7	6	100	0	68	50	17	0	32	1.47
36124106--36124156	21	2.4	21	93	0	84	27	3	21	47	1.68
36124161--36124187	13	2.1	13	100	0	54	33	7	22	37	1.82
36127110--36127202	42	2.2	42	90	0	141	22	18	32	26	1.97
36141223--36141272	3	16.3	3	80	12	57	64	6	0	30	1.18
36141223--36141267	12	3.8	12	84	0	63	64	6	0	28	1.19
36141451--36141620	3	56.7	3	73	4	110	59	2	8	28	1.42
36141446--36141594	51	3.0	51	89	2	212	60	3	8	27	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36143252--36143388	60	2.3	57	81	9	152	45	0	3	50	1.24
36143526--36143587	16	3.9	16	76	0	61	33	25	3	37	1.72
36143519--36143584	32	2.1	32	82	0	78	31	25	4	37	1.76
36145901--36146230	166	2.0	167	86	3	468	33	13	20	33	1.91
36146470--36146554	45	1.9	44	90	2	134	25	14	23	36	1.93
36149352--36149535	40	4.7	40	80	11	186	26	27	21	25	1.99
36151532--36151611	42	1.9	42	100	0	160	22	30	18	28	1.98
36162013--36162052	16	2.5	16	100	0	80	30	5	12	52	1.60
36168360--36168491	63	2.1	64	85	5	180	29	20	23	26	1.99
36168811--36168865	28	2.0	28	96	0	101	34	21	23	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310