genome.fa.s13.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  149  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48752288--48752365	40	1.9	41	82	10	97	26	28	20	24	1.99
48756728--48756918	96	2.0	96	93	0	328	30	29	20	18	1.97
48757042--48757245	102	2.0	102	92	0	336	24	30	15	28	1.96
48757566--48757805	121	2.0	121	93	0	408	23	30	22	23	1.99
48759243--48759384	68	2.1	68	97	0	266	22	19	16	41	1.90
48760523--48760694	40	4.3	40	85	5	206	26	27	20	25	1.99
48760523--48760737	80	2.7	79	76	5	209	26	26	20	25	1.99
48760679--48760756	40	1.9	41	82	10	97	26	28	20	24	1.99
48768471--48768642	40	4.3	40	87	2	213	25	27	21	25	1.99
48768471--48768695	80	2.8	80	80	6	215	25	27	21	25	2.00
48771315--48771357	10	3.9	11	87	6	52	34	6	0	58	1.25
48771897--48771936	21	1.9	21	100	0	80	35	10	20	35	1.86
48784030--48784054	13	1.9	13	100	0	50	32	16	16	36	1.90
48785816--48786126	161	1.9	161	92	3	529	35	10	22	30	1.89
48814268--48814361	47	2.0	47	100	0	188	38	27	6	27	1.81
48827637--48828021	51	7.7	51	80	6	437	25	20	26	27	1.99
48827630--48827964	100	3.3	100	93	1	528	26	20	26	26	1.99
48827637--48828019	151	2.5	150	87	3	520	25	19	26	27	1.99
48831090--48831296	53	3.8	54	78	3	202	38	19	22	19	1.94
48839071--48839138	30	2.2	30	87	7	93	57	11	5	25	1.56
48839713--48839844	55	2.4	54	83	1	165	37	20	22	19	1.95
48839803--48839917	53	2.2	52	80	3	122	43	15	23	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48846065--48846125	30	2.0	30	83	0	77	31	22	8	37	1.84
48850106--48850222	58	2.0	58	98	0	225	35	35	5	22	1.79
48863148--48864500	679	2.0	679	98	0	2634	39	11	29	20	1.87
48866671--48866729	28	2.1	28	100	0	118	35	15	10	38	1.81
48866820--48866915	39	2.5	39	81	5	106	26	30	23	19	1.98
48866887--48867012	39	3.2	39	90	0	189	27	30	20	21	1.98
48866849--48867008	78	2.1	78	81	5	182	26	30	22	21	1.99
48875760--48875895	49	2.7	51	85	2	195	29	26	19	24	1.99
48877495--48877726	46	4.9	49	75	12	218	26	19	31	22	1.98
48877498--48877813	138	2.3	133	80	10	334	26	19	30	24	1.98
48883092--48883177	43	2.0	43	95	4	156	34	20	13	30	1.92
48895215--48895420	47	4.4	47	94	0	340	29	31	7	32	1.85
48895215--48895420	94	2.2	94	96	0	376	29	31	7	32	1.85
48898635--48898704	21	3.3	20	72	7	68	45	17	21	15	1.85
48898617--48898768	42	3.6	42	83	3	189	43	16	23	16	1.87
48900189--48900217	14	2.0	15	93	6	51	20	13	24	41	1.89
48900218--48900256	18	2.2	17	86	13	53	23	2	0	74	0.94
48902103--48902143	21	2.0	20	85	4	55	51	0	19	29	1.47
48905588--48905638	20	2.5	20	90	0	84	21	35	33	9	1.86
48909175--48909344	48	3.6	47	87	9	215	22	31	18	26	1.97
48909177--48909438	46	5.6	48	81	10	237	22	31	19	27	1.98
48914368--48914476	33	3.3	32	77	14	116	35	2	4	56	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48915707--48915741	16	2.2	16	100	0	70	45	5	17	31	1.71
48921156--48921189	17	1.9	18	94	5	61	32	38	29	0	1.58
48925107--48925152	23	2.0	23	83	8	58	39	4	0	56	1.19
48938705--48938740	14	2.7	14	91	8	58	8	8	8	75	1.21
48940326--48940369	21	2.0	22	86	4	63	25	6	34	34	1.82
48943103--48943165	33	1.9	33	84	12	85	12	25	6	55	1.60
48943163--48943218	21	2.7	21	72	5	51	8	17	1	71	1.21
48943162--48943218	14	4.1	14	75	16	57	8	17	1	71	1.19
48943180--48943318	18	7.7	18	71	11	88	7	20	2	69	1.27
48943180--48943287	6	17.7	6	70	5	74	6	18	3	71	1.23
48947757--48947792	18	2.0	18	100	0	72	16	22	16	44	1.86
48948497--48948527	13	2.4	13	100	0	62	16	41	29	12	1.85
48952405--48952439	11	3.1	11	87	4	52	20	0	20	60	1.37
48982023--48982200	27	6.6	27	83	3	205	26	15	28	29	1.96
48982024--48982179	82	1.9	81	88	3	233	26	15	28	29	1.96
48982020--48982200	82	2.2	81	83	2	229	27	15	27	29	1.96
48985647--48985752	42	2.5	42	98	1	203	33	12	14	40	1.83
48985735--48985779	14	3.3	14	84	6	65	37	0	13	48	1.42
48986461--48986565	53	2.0	53	98	0	201	21	18	14	45	1.84
48986805--48986864	29	2.1	29	90	6	95	43	28	0	28	1.55
48988186--48988238	18	2.9	18	80	0	70	52	0	30	16	1.44
48988128--48988577	146	3.1	146	99	0	882	58	2	25	13	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48988332--48988384	18	2.9	18	80	0	70	52	0	30	16	1.44
48988478--48988530	18	2.9	18	80	0	70	52	0	30	16	1.44
48991351--48991410	22	2.7	23	73	19	63	66	6	0	26	1.16
48991360--48991393	4	8.0	4	90	9	50	73	2	0	23	0.97
48991850--48991962	57	2.0	57	98	0	217	24	24	7	43	1.79
48992004--48992109	42	2.5	42	93	1	185	33	11	13	41	1.80
48992092--48992136	14	3.3	14	84	6	65	37	0	13	48	1.42
48994696--48994755	29	2.1	29	93	0	102	41	30	0	28	1.56
48994702--48994749	15	3.3	15	73	5	53	43	27	0	29	1.55
48995428--48995475	14	3.4	14	82	0	51	45	6	29	18	1.74
49003623--49004610	40	24.7	40	98	0	1858	29	27	18	24	1.98
49007474--49007706	27	8.6	27	86	6	287	27	18	17	36	1.93
49007475--49007698	81	2.8	81	89	4	319	27	19	17	35	1.94
49007688--49007788	27	3.7	27	86	2	132	26	7	23	41	1.82
49007485--49007760	54	5.1	54	83	4	272	28	17	17	36	1.92
49007475--49007733	81	3.2	80	83	5	299	27	17	18	36	1.93
49010617--49010821	27	7.6	27	87	2	277	24	17	19	38	1.92
49010780--49010894	27	4.3	27	77	12	76	27	10	20	40	1.85
49010617--49010848	81	2.9	80	81	5	263	25	16	19	38	1.92
49010806--49010957	27	5.6	27	80	8	157	26	6	21	45	1.76
49016610--49016665	27	2.0	28	82	3	69	35	10	28	25	1.89
49019376--49019418	5	8.6	5	100	0	86	0	39	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49022034--49022125	40	2.3	41	81	9	102	27	25	25	22	2.00
49026940--49027037	30	3.3	30	67	13	76	26	15	30	27	1.96
49029234--49029301	30	2.3	30	82	5	84	10	22	1	66	1.30
49029370--49029426	5	11.0	5	75	20	55	3	17	1	77	1.00
49029370--49029426	16	3.7	14	82	15	60	3	17	1	77	1.00
49029370--49029437	21	3.2	21	76	15	61	2	17	2	76	1.04
49030377--49030529	82	1.9	80	80	2	180	38	11	7	42	1.70
49031563--49031622	17	3.6	16	74	17	50	26	28	10	35	1.89
49032019--49032115	30	3.2	30	71	8	81	27	15	27	28	1.96
49037780--49037854	36	2.1	36	94	0	132	32	20	12	36	1.89
49039824--49039876	23	2.4	22	76	20	56	9	18	1	69	1.25
49040061--49040160	50	2.0	50	98	0	191	27	26	25	22	2.00
49046788--49046885	29	3.4	29	76	0	106	35	17	28	18	1.93
49049682--49049759	29	2.8	28	73	21	72	24	14	34	26	1.93
49061652--49062051	200	2.0	200	99	0	791	23	29	8	38	1.85
49064116--49064150	17	2.1	17	88	0	52	20	5	8	65	1.40
49066635--49066743	43	2.6	42	79	5	121	28	24	16	30	1.97
49069277--49069452	27	6.5	27	80	2	176	38	21	10	30	1.87
49069277--49069459	81	2.3	81	83	3	217	37	20	10	31	1.87
49069283--49069614	54	6.2	53	75	8	215	36	21	10	31	1.87
49069277--49069567	27	10.8	26	71	13	135	36	20	10	31	1.87
49069350--49069507	81	2.0	81	81	5	185	36	20	10	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49069382--49069614	108	2.2	108	100	0	466	36	21	9	31	1.86
49069354--49069614	27	9.7	26	69	10	103	37	21	9	31	1.86
49069606--49069818	27	7.9	27	88	1	302	34	18	21	25	1.96
49070014--49070083	6	11.3	6	82	10	79	17	15	17	50	1.79
49070386--49070442	6	9.3	6	75	17	55	19	15	15	49	1.80
49089632--49089758	45	2.9	45	85	8	147	23	28	23	24	2.00
49090149--49090272	38	3.2	37	86	6	158	33	25	19	20	1.96
49090524--49090646	61	2.0	61	96	0	228	35	20	7	36	1.80
49095147--49095219	37	2.0	37	100	0	146	43	19	5	31	1.73
49095789--49095900	43	2.6	42	81	5	136	28	22	16	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310