genome.fa.s13.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  163  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53326321--53326364	19	2.3	18	85	14	54	13	6	25	54	1.63
53327721--53327896	27	6.6	27	78	5	169	34	11	23	30	1.90
53329967--53330024	29	2.1	29	80	6	66	32	20	20	25	1.97
53332807--53332953	61	2.4	61	80	3	163	24	23	14	37	1.92
53335232--53335272	21	1.9	22	85	5	57	48	9	0	41	1.36
53335609--53335684	37	2.1	37	97	0	143	47	13	1	38	1.51
53342442--53342490	19	2.5	20	75	24	50	28	12	12	46	1.77
53345981--53346054	27	2.8	26	80	13	87	41	16	16	25	1.88
53355250--53355295	24	1.9	24	82	8	58	47	2	19	30	1.61
53358741--53358816	37	2.1	37	97	0	143	38	1	13	47	1.51
53359153--53359193	21	1.9	22	85	5	57	41	0	9	48	1.36
53361481--53361620	61	2.3	61	81	2	165	35	15	23	25	1.94
53366552--53366704	27	5.7	27	80	3	166	30	23	11	34	1.91
53368061--53368104	19	2.3	18	85	14	54	54	25	6	13	1.63
53372169--53372339	93	1.8	93	91	2	281	22	22	27	28	1.99
53372176--53372344	46	3.7	45	75	16	175	23	21	26	28	1.99
53380404--53380495	25	3.6	25	77	1	85	26	16	23	33	1.95
53380551--53380610	13	4.4	13	69	19	50	50	0	13	36	1.42
53380539--53380667	42	3.1	41	85	4	163	48	3	16	31	1.64
53380548--53380614	21	3.2	21	66	8	64	50	0	14	34	1.44
53380549--53380667	40	2.9	40	87	2	157	47	3	15	33	1.61
53380639--53380681	14	3.3	12	79	17	50	41	2	18	37	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53384031--53384073	18	2.5	17	85	11	52	11	2	9	76	1.10
53384042--53384077	18	2.1	17	94	5	63	8	0	11	80	0.90
53386315--53386539	40	5.7	40	84	5	260	25	28	21	24	1.99
53386317--53386539	119	1.9	120	83	6	292	25	27	21	25	2.00
53387673--53387789	56	2.1	56	98	0	225	23	23	8	44	1.81
53395512--53395583	34	2.2	33	82	7	83	31	20	22	25	1.98
53398739--53398820	41	2.0	40	97	2	155	40	9	26	21	1.85
53399123--53399169	23	2.0	23	95	0	85	17	19	29	34	1.94
53403997--53404173	40	4.5	40	87	4	245	23	23	28	24	1.99
53403997--53404173	79	2.2	80	85	6	245	23	23	28	24	1.99
53418045--53418174	40	3.3	39	84	3	170	23	21	27	26	1.99
53418045--53418209	79	2.1	79	80	2	179	25	21	27	25	1.99
53429879--53429937	29	2.0	28	83	6	73	72	0	20	6	1.06
53441745--53441866	22	5.3	22	62	21	61	25	29	11	33	1.91
53441738--53442759	47	21.7	47	98	0	1956	27	31	10	30	1.90
53444161--53444280	56	2.1	56	98	0	231	22	23	9	45	1.81
53457873--53458105	96	2.4	98	86	3	310	29	19	27	24	1.98
53457877--53458105	48	4.7	49	80	5	225	28	19	27	24	1.99
53460311--53461274	39	24.6	39	97	1	1733	23	28	22	25	2.00
53463457--53463494	19	2.0	19	100	0	76	31	21	15	31	1.94
53468885--53469043	43	3.7	43	75	6	135	27	15	24	33	1.95
53473965--53474272	40	7.7	40	96	0	553	22	27	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53482741--53482792	25	2.1	25	96	0	95	28	21	11	38	1.88
53488098--53488130	14	2.4	14	90	5	50	30	0	3	66	1.06
53490503--53490674	93	1.8	93	92	0	290	27	27	22	22	1.99
53490496--53490671	46	3.8	46	75	12	180	28	27	21	22	1.99
53490548--53490690	46	3.1	44	75	15	130	28	27	20	23	1.99
53493061--53493149	30	3.0	30	79	11	94	56	15	17	10	1.67
53493061--53493143	15	5.6	14	73	10	58	55	16	18	9	1.68
53493072--53493149	15	5.2	15	75	9	70	55	15	17	11	1.69
53496064--53496239	46	3.8	46	72	14	155	27	26	22	24	2.00
53496071--53496242	93	1.8	93	87	2	256	26	26	22	24	2.00
53496165--53496250	46	1.9	45	85	4	120	30	27	19	22	1.98
53505338--53505422	42	2.0	42	95	0	152	58	5	7	28	1.48
53505468--53505506	18	2.2	18	86	4	53	71	5	17	5	1.23
53512781--53512836	15	3.7	15	85	7	78	12	16	8	62	1.53
53518030--53518081	27	1.9	27	84	0	68	34	21	23	21	1.97
53521493--53521526	16	2.1	17	94	5	61	32	0	0	67	0.91
53527126--53527211	40	2.2	39	85	2	109	29	27	17	25	1.97
53531760--53531800	20	2.0	20	86	9	57	21	9	2	65	1.34
53534318--53534501	40	4.6	41	81	12	208	25	22	27	25	2.00
53534318--53534501	79	2.3	81	82	11	222	25	22	27	25	2.00
53534370--53534534	79	2.1	79	82	8	194	26	21	27	24	1.99
53541305--53541364	30	2.0	29	90	3	93	43	11	23	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53555030--53555145	58	2.0	58	96	0	214	36	6	21	36	1.78
53556146--53556268	22	5.3	22	62	24	56	33	12	30	23	1.91
53556197--53556266	24	3.0	24	67	29	60	31	14	32	21	1.93
53556027--53556412	47	8.2	47	91	0	601	34	11	28	25	1.91
53556426--53556562	46	3.0	46	89	0	193	35	8	32	24	1.85
53562179--53562534	40	8.9	40	89	0	514	23	21	29	25	1.99
53563687--53563750	32	2.0	32	96	0	119	50	20	12	17	1.78
53566118--53566263	47	3.1	47	88	1	204	34	9	29	26	1.88
53566437--53566558	47	2.6	46	85	2	163	35	8	28	27	1.86
53565944--53566558	319	1.9	320	96	1	1144	36	6	24	32	1.82
53566437--53566580	47	3.1	46	81	4	137	35	8	29	26	1.86
53574406--53574431	11	2.4	11	100	0	52	46	19	7	26	1.77
53580220--53580278	29	2.0	28	83	6	73	72	0	20	6	1.06
53590251--53590420	40	4.3	40	88	0	207	24	21	28	25	1.99
53590198--53590420	80	2.8	79	82	3	232	24	21	28	25	1.99
53590273--53590455	79	2.3	80	82	1	226	25	21	28	24	1.99
53610426--53610646	48	4.6	48	81	2	237	28	18	27	25	1.98
53610429--53610659	96	2.4	97	88	1	320	29	19	27	24	1.98
53611970--53612025	21	2.7	21	69	2	51	23	8	23	44	1.81
53618438--53618489	25	2.1	25	92	0	86	26	21	13	38	1.90
53620272--53620650	24	16.0	24	90	5	585	29	19	21	30	1.97
53620293--53620650	47	7.6	47	97	2	639	29	18	20	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53620703--53620745	20	2.2	20	100	0	86	32	18	11	37	1.87
53620782--53620829	25	1.9	25	86	0	69	27	14	25	33	1.94
53628344--53628407	31	2.1	31	90	0	101	25	23	15	35	1.94
53628600--53628767	24	7.0	24	89	7	252	27	20	20	30	1.98
53628822--53629620	40	20.0	40	99	0	1589	32	22	9	35	1.87
53629659--53629706	25	1.9	25	86	0	69	25	16	25	33	1.96
53641587--53641633	24	2.0	24	91	0	76	36	2	38	23	1.67
53643047--53643158	27	4.1	27	79	12	113	17	25	20	36	1.94
53652915--53653185	46	5.8	46	75	9	185	28	19	29	23	1.98
53666281--53666362	43	2.0	43	82	4	105	32	29	13	24	1.93
53666343--53666472	55	2.3	56	89	1	208	33	25	16	24	1.95
53670581--53670861	40	7.0	40	92	0	472	29	19	25	25	1.99
53672778--53672852	37	2.0	37	100	0	150	24	24	13	38	1.91
53677678--53677714	19	1.9	19	94	0	65	32	18	35	13	1.90
53677792--53677936	28	5.1	28	78	9	127	28	13	33	24	1.94
53677796--53677937	57	2.5	58	82	7	150	27	14	34	23	1.93
53681993--53682481	47	10.4	47	98	0	915	29	30	8	31	1.87
53701742--53701865	28	4.4	28	78	9	135	27	14	33	25	1.94
53701736--53701866	57	2.3	56	81	7	149	25	15	35	23	1.94
53717815--53718009	40	4.9	40	84	4	216	23	21	28	26	1.99
53734728--53734758	14	2.2	14	100	0	62	35	0	25	38	1.56
53737369--53737504	49	2.7	50	78	5	159	36	25	14	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53737518--53737549	16	2.0	16	93	0	55	56	34	0	9	1.32
53738960--53739046	29	3.0	29	81	0	102	28	13	27	29	1.94
53749789--53749846	30	2.0	29	89	3	89	25	15	25	32	1.95
53750191--53750220	15	2.1	15	93	6	53	30	6	26	36	1.82
53752152--53752247	41	2.3	43	83	7	117	29	20	29	20	1.98
53752098--53752300	40	4.9	41	74	10	151	26	20	28	24	1.99
53753255--53753611	180	2.0	180	96	0	660	35	10	17	36	1.84
53756836--53756907	29	2.5	29	81	0	90	30	11	26	31	1.91
53763474--53763503	12	2.5	12	94	0	51	30	40	23	6	1.80
53764808--53767114	259	8.9	259	99	0	4548	42	16	9	32	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310