genome.fa.s13.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  152  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49913082--49913326	120	2.1	118	86	4	341	25	20	27	25	1.99
49913029--49913293	40	6.7	40	89	4	358	24	21	27	25	1.99
49918397--49918486	28	3.3	26	89	4	117	20	21	22	36	1.95
49918397--49918503	27	4.0	26	86	6	124	21	22	19	36	1.95
49930382--49930414	15	2.2	16	89	10	52	24	0	21	54	1.45
49931222--49931252	15	2.1	15	93	0	53	29	0	22	48	1.51
49939406--49939507	27	3.8	28	83	5	120	40	21	8	29	1.83
49939460--49939520	27	2.3	27	82	5	70	39	16	16	27	1.90
49939406--49939520	54	2.1	54	82	3	133	40	19	11	29	1.86
49939881--49939939	22	2.7	22	83	0	73	22	27	22	28	1.99
49941711--49942032	159	2.0	159	89	0	491	20	20	28	30	1.98
49945054--49945248	56	3.5	56	86	2	275	34	23	13	28	1.93
49946395--49946423	14	2.0	15	93	6	51	51	20	0	27	1.47
49952543--49952653	27	4.1	26	84	7	132	15	22	23	38	1.92
49952543--49952653	54	2.1	54	86	3	152	15	22	23	38	1.92
49954254--49955183	465	2.0	465	95	0	1689	27	15	33	23	1.95
49960855--49960967	27	4.2	27	83	11	126	14	23	23	39	1.90
49960855--49960967	54	2.1	54	85	6	149	14	23	23	39	1.90
49966069--49966226	43	3.7	42	73	7	113	29	24	21	25	1.99
49966659--49966759	50	2.0	50	92	0	166	29	23	13	32	1.94
49969628--49969687	28	2.1	28	90	0	93	26	10	31	31	1.89
49969643--49969698	28	2.0	28	85	0	76	28	10	25	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49970353--49970394	21	2.0	21	95	0	75	23	7	14	54	1.64
49972576--49972629	27	2.0	28	85	7	76	31	18	20	29	1.96
49981052--49981312	27	9.6	27	97	0	459	28	14	26	30	1.95
49989041--49989118	29	2.7	28	84	11	104	25	15	30	28	1.96
49989071--49989389	174	1.8	174	97	0	602	29	15	24	31	1.95
49989270--49989509	120	2.0	120	99	0	471	29	16	22	31	1.96
49991887--49991911	13	1.9	13	100	0	50	16	20	0	64	1.30
49994882--49994946	31	2.1	31	97	0	121	16	24	32	26	1.96
50008370--50008849	27	17.6	27	97	1	474	30	29	14	25	1.95
50008370--50008849	54	8.8	54	96	1	852	30	29	14	25	1.95
50008370--50008849	82	5.9	82	97	1	874	30	29	14	25	1.95
50013173--50013231	30	2.0	30	86	0	82	47	10	8	33	1.68
50022170--50022296	43	3.0	42	82	6	166	28	22	15	33	1.95
50027070--50027108	20	2.0	20	85	10	53	35	20	0	43	1.52
50034641--50034803	81	2.0	81	100	0	326	28	27	18	25	1.98
50034675--50034831	37	4.1	37	76	13	172	28	28	19	23	1.98
50034898--50035148	125	2.0	125	98	0	484	30	28	8	33	1.86
50035161--50035345	47	3.9	47	91	0	289	26	28	11	33	1.92
50035254--50035329	22	3.3	22	67	16	64	25	27	13	34	1.93
50039724--50039852	43	3.0	42	76	6	125	27	22	15	34	1.94
50039724--50039852	42	3.0	43	75	8	131	27	22	15	34	1.94
50041499--50041625	43	3.0	42	78	6	139	26	24	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50041499--50041625	42	3.0	42	76	8	141	26	24	14	33	1.94
50047900--50047977	29	2.8	28	86	3	102	26	15	29	28	1.96
50048581--50048672	39	2.3	39	88	5	132	25	28	22	23	2.00
50048562--50048725	40	4.1	40	78	10	167	24	26	23	25	2.00
50057986--50058070	44	1.9	44	97	0	161	21	29	24	24	1.99
50059594--50059821	27	8.4	27	83	1	258	32	20	21	24	1.97
50059597--50059819	83	2.7	82	81	2	261	33	21	21	24	1.97
50059959--50060022	27	2.4	27	84	2	76	17	21	21	39	1.93
50059972--50060051	27	3.0	27	77	1	72	20	22	18	38	1.93
50102805--50103277	50	9.6	50	87	7	702	36	6	26	30	1.81
50102805--50103280	98	4.9	98	98	0	907	36	6	26	30	1.81
50103429--50103503	37	2.0	37	89	0	114	22	17	30	29	1.97
50107766--50107834	36	1.9	36	96	0	129	37	23	21	17	1.94
50114825--50114983	43	3.7	42	80	9	169	31	27	18	22	1.97
50114820--50114989	86	2.0	85	83	3	216	32	27	17	22	1.96
50117465--50117511	23	2.0	23	95	0	85	36	29	10	23	1.89
50127279--50127347	35	2.0	35	94	0	120	33	17	14	34	1.90
50133266--50133358	34	2.8	34	83	4	109	25	22	24	26	2.00
50135194--50135396	53	3.8	53	75	5	201	20	22	18	37	1.94
50142652--50142761	53	2.1	52	83	6	141	20	22	15	40	1.90
50145002--50145119	57	2.1	57	95	1	211	28	15	12	43	1.83
50145893--50146024	40	3.3	40	84	2	167	27	28	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50146009--50146086	40	1.9	41	82	10	97	26	28	21	23	1.99
50157186--50157390	103	2.0	103	99	0	401	25	18	26	30	1.98
50164729--50164827	28	3.5	29	83	6	114	30	27	15	27	1.96
50167508--50167682	58	3.0	58	97	0	323	44	22	8	25	1.79
50171791--50171851	25	2.5	24	84	12	72	21	27	19	31	1.97
50177476--50177818	35	9.8	35	79	5	345	43	19	8	28	1.80
50177486--50177818	70	4.8	70	89	1	427	42	19	8	28	1.81
50180315--50180458	27	5.3	27	88	3	173	29	24	6	39	1.81
50180327--50180458	54	2.4	54	88	0	192	31	23	6	39	1.79
50180450--50180640	27	7.1	27	75	7	138	41	21	9	27	1.85
50180494--50180640	54	2.7	54	76	2	152	42	21	8	27	1.81
50180490--50180639	81	1.9	81	84	2	203	43	20	8	28	1.80
50180596--50180698	27	3.7	27	80	10	109	44	18	5	31	1.73
50180729--50180794	27	2.4	27	82	5	80	36	19	22	21	1.95
50181512--50181588	20	3.8	20	89	0	118	42	11	16	28	1.84
50182631--50182756	24	5.2	24	89	5	175	28	22	19	30	1.98
50184659--50184715	25	2.3	25	84	0	78	22	28	19	29	1.98
50184860--50184947	42	2.1	42	86	0	122	32	13	17	36	1.89
50184973--50185051	31	2.5	31	83	0	104	31	16	26	25	1.96
50185035--50185112	29	2.7	29	93	2	138	30	24	24	20	1.98
50189086--50189131	24	1.9	24	86	0	65	32	23	15	28	1.95
50189242--50189299	24	2.4	24	82	11	73	29	18	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50193464--50193513	23	2.3	23	83	10	61	24	2	28	46	1.64
50195958--50196110	42	3.5	41	74	13	135	24	23	20	30	1.99
50196083--50196264	48	3.8	48	74	5	145	29	24	18	27	1.98
50207974--50208032	30	2.0	29	96	0	100	32	20	20	25	1.96
50214378--50214407	13	2.3	13	94	0	51	53	10	16	20	1.71
50216862--50216961	28	3.6	27	78	2	92	19	23	22	36	1.95
50216862--50216972	27	4.1	26	80	9	114	18	22	20	38	1.93
50216862--50216972	55	2.0	54	82	5	134	18	22	20	38	1.93
50222003--50222095	38	2.4	38	85	0	114	24	22	25	26	2.00
50222099--50222339	43	5.6	43	90	0	383	10	24	32	32	1.90
50226528--50226624	38	2.6	38	81	0	113	22	25	27	23	2.00
50226607--50226868	43	6.1	43	89	0	384	12	24	32	30	1.92
50244373--50244453	27	3.0	26	84	8	99	16	22	22	39	1.92
50250546--50250575	12	2.5	12	100	0	60	16	16	13	53	1.73
50259954--50260022	24	2.9	24	78	2	59	15	27	0	56	1.40
50259975--50260023	18	2.7	18	83	0	62	16	24	0	59	1.37
50260135--50260168	12	2.8	12	90	0	50	17	23	11	47	1.81
50261911--50262356	223	2.0	223	98	0	865	34	18	15	31	1.92
50266578--50266912	48	7.0	48	95	1	600	36	6	26	30	1.82
50266835--50266990	78	2.0	78	94	0	276	37	5	25	32	1.78
50267121--50267223	37	2.8	37	90	0	161	23	21	31	24	1.99
50270466--50270636	93	1.8	93	92	0	288	28	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50270461--50270633	46	3.7	46	79	10	199	29	28	20	21	1.98
50271056--50271115	30	2.0	30	83	0	75	33	23	5	38	1.76
50278527--50278667	56	2.5	54	82	4	147	30	34	17	17	1.93
50282010--50282274	47	5.5	48	75	13	231	27	21	27	23	1.99
50281996--50282275	94	2.9	96	84	7	352	28	20	27	23	1.99
50282043--50282271	47	4.7	49	80	7	252	28	20	27	22	1.99
50284402--50284492	43	2.1	43	97	0	173	28	8	24	38	1.85
50284532--50284716	40	4.6	39	82	6	203	24	21	27	26	1.99
50284532--50284716	79	2.3	81	82	7	218	24	21	27	26	1.99
50284587--50284749	79	2.1	79	81	6	188	26	19	28	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310